Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000218.1

Orthogroup ID

OG0008533

Physical Location & Seq

Genomic Coordinates Forward (+)

105502 .. 108587

Gene Structure 3086 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000218.1_g000027.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1341 bp

atgaccgcctatctcactctccgccgcccctccctcacgcacctcacgcgccacttctccgccaaaaccaaaatccccactctctattcccccaccgccacccaaaacgacgcgggacccaccacagccctccaactcctctcatggggccgaggcgcctccggccaactcggcggcggcatcgaagaaatccggctctacccatctccggtggccaacctcgccgtcccctcctcctccttcaccctctcacctactccaggcaaaatccaaacacccaaagacggtaatggcgttttggaggtgggcatttcttgtgggttgtttcactcttcgctattggtggacggcaaggtttggatttggggtaaaggcgatgggggtcgcctcggttttgggcatgaaaactctgcgtttctgcccacattgaatccctatttggagtcgatacggtgcgtttcgcttggtgggttgcattctgtttccctcacctccctcggcgacgtctatacttggggttatggtggttttggtgcactgggacattctatctataccagagaattgtttccaagattggttgaaggttcatggagtgggagaatacaacatgtttcaactagtgggacgcatactgctgccatcacagaatcaggagaactttatacttggggtcgagatgaaggggatggtagattgggccttggtcctaatcgcggcccaaatgagggtggtggacttagcattccctccaaagtgaaagcattacctatgcctgtggctgctgtttcttgcggagggtttttcactatggtactaactgagaatggggaactttggaattggggggcaaactctaactttgagcttggaaggggtgatagggttggtggctggcaaccaaaacctgtacctagtcttgtaggcgttcgtatcattcaggtagcaagcggtggatatcattctgttgcattaactgatgaaggtaaagtactttcttggggccatggtggacatggtcagttgggcaactcttctgtccaaaatcaaaaaacacctacagttgtgaaggctctaactgatgagcgtgtcatatatatagcttgtggaggttcatcttcggcggctataactgggaagttgtatatgtggggatacaccaaagattctcagttaggagttcctgggctgccagagatacaatcaagccctgttgaagtcaaatttcttatggaggatgatggattaggaccccacaatgttctttcaattgcagttggtgcatctcatgctatgtgtttggtttcaaggtcaggttcacaaagattattcgcaccgtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RCC1

Protein Analysis

446

Amino Acids

46.95

Weight (kDa)

8.21

Isoelectric Point (pI)

33.09

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008533)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G60870 AT5G60870 AT5G60870 AT5G60870
fragaria_vesca	FvH4_6g39230 FvH4_6g39230
malus_domestica	MD09G1144200.v1.1
prunus_persica	Prupe.3G183700_v2.0.a1 Prupe.3G183700_v2.0.a1
pyrus_communis	pycom09g06360 pycom17g12330
rosa_chinensis	RchiOBHm_Chr2g0153071
rosa_laevigata	RLG00000020674
rosa_multiflora	Rmu_sc0000218.1_g000027 Rmu_sc0037109.1_g000001
rosa_roxburghii	Rroxscaffold_2G00095220 Rroxscaffold_2G00095250
rosa_rugosa	Rorug02G0437100
rosa_samantha	Rh2AG499300 Rh2BG510600 Rh2CG485700 Rh2DG522300
rosa_wichuraiana	Rw2G040980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	507
AccB1I	GGYRCC	1 cut(s)	155
AccII	CGCG	3 cut(s)	49, 113, 717
AcoI	YGGCCR	2 cut(s)	163, 213
AcsI	RAATTY	1 cut(s)	1223
AcyI	GRCGYC	2 cut(s)	156, 504
AfaI	GTAC	3 cut(s)	816, 912, 993
AfiI	CCNNNNNNNGG	7 cut(s)	145, 208, 260, 284, 716, 727, 728
AflIII	ACRYGT	1 cut(s)	610
AgsI	TTSAA	6 cut(s)	430, 584, 618, 1217, 1269, 1308
AhlI	ACTAGT	1 cut(s)	620
AjnI	CCWGG	2 cut(s)	259, 1183
AjuI	GAANNNNNNNTTGG	2 cut(s)	422, 454
AluBI	AGCT	2 cut(s)	868, 1103
AluI	AGCT	2 cut(s)	868, 1103
Alw21I	GWGCWC	1 cut(s)	538
Alw44I	GTGCAC	1 cut(s)	534
AoxI	GGCC	6 cut(s)	148, 163, 213, 700, 718, 1003
ApaLI	GTGCAC	1 cut(s)	534
ApeKI	GCWGC	3 cut(s)	638, 782, 1189
ApoI	RAATTY	1 cut(s)	1223
Asp700I	GAANNNNTTC	1 cut(s)	567
AspLEI	GCGC	2 cut(s)	51, 158
AspS9I	GGNCC	7 cut(s)	116, 148, 700, 707, 719, 1003, 1250
AsuHPI	GGTGA	4 cut(s)	235, 243, 481, 890
AvaII	GGWCC	3 cut(s)	116, 707, 1250
BaeGI	GKGCMC	1 cut(s)	538
BalI	TGGCCA	1 cut(s)	215
BanI	GGYRCC	1 cut(s)	155
BarI	GAAGNNNNNNTAC	2 cut(s)	975, 1007
Bbv12I	GWGCWC	1 cut(s)	538
BbvI	GCAGC	3 cut(s)	625, 769, 1176
BccI	CCATC	5 cut(s)	211, 371, 650, 683, 1235
BceAI	ACGGC	2 cut(s)	209, 364
BciT130I	CCWGG	2 cut(s)	261, 1185
BciVI	GTATCC	1 cut(s)	1148
BcuI	ACTAGT	1 cut(s)	620
BfaI	CTAG	2 cut(s)	621, 915
BfmI	CTRYAG	1 cut(s)	1059
BfoI	RGCGCY	1 cut(s)	159
BfuI	GTATCC	1 cut(s)	1148
BglI	GCCNNNNNGGC	1 cut(s)	171
BisI	GCNGC	8 cut(s)	25, 175, 178, 639, 718, 783, 1125, 1190
BlsI	GCNGC	8 cut(s)	26, 176, 179, 640, 719, 784, 1126, 1191
BmcAI	AGTACT	1 cut(s)	993
Bme1390I	CCNGG	2 cut(s)	261, 1185
Bme18I	GGWCC	3 cut(s)	116, 707, 1250
BmgT120I	GGNCC	7 cut(s)	116, 148, 700, 707, 719, 1003, 1250
BmiI	GGNNCC	6 cut(s)	117, 118, 149, 157, 1004, 1252
BmrFI	CCNGG	2 cut(s)	261, 1185
BmrI	ACTGGG	2 cut(s)	548, 1143
BmsI	GCATC	2 cut(s)	189, 1292
BmuI	ACTGGG	2 cut(s)	548, 1143
BpmI	CTGGAG	1 cut(s)	243
BsaHI	GRCGYC	2 cut(s)	156, 504
BsaJI	CCNNGG	6 cut(s)	151, 388, 496, 703, 1006, 1184
BsaWI	WCCGGW	1 cut(s)	208
Bsc4I	CCNNNNNNNGG	7 cut(s)	145, 208, 260, 284, 716, 727, 728
Bse1I	ACTGG	2 cut(s)	543, 1138
BseBI	CCWGG	2 cut(s)	261, 1185
BseDI	CCNNGG	6 cut(s)	151, 388, 496, 703, 1006, 1184
BseGI	GGATG	2 cut(s)	694, 1243
BseLI	CCNNNNNNNGG	7 cut(s)	145, 208, 260, 284, 716, 727, 728
BseMII	CTCAG	2 cut(s)	813, 1184
BseNI	ACTGG	2 cut(s)	543, 1138
BseRI	GAGGAG	3 cut(s)	128, 223, 226
BseSI	GKGCMC	1 cut(s)	538
BseXI	GCAGC	3 cut(s)	625, 769, 1176
Bsh1236I	CGCG	3 cut(s)	49, 113, 717
BshFI	GGCC	6 cut(s)	150, 165, 215, 702, 720, 1005
BshNI	GGYRCC	1 cut(s)	155
BsiHKAI	GWGCWC	1 cut(s)	538
BsiSI	CCGG	3 cut(s)	162, 193, 209
BslFI	GGGAC	4 cut(s)	129, 212, 555, 640
BslI	CCNNNNNNNGG	7 cut(s)	145, 208, 260, 284, 716, 727, 728
BsmFI	GGGAC	4 cut(s)	129, 212, 555, 640
BsmI	GAATGC	2 cut(s)	475, 744
BsnI	GGCC	6 cut(s)	150, 165, 215, 702, 720, 1005
Bsp1286I	GDGCHC	1 cut(s)	538
Bsp19I	CCATGG	1 cut(s)	1006
BspANI	GGCC	6 cut(s)	150, 165, 215, 702, 720, 1005
BspCNI	CTCAG	2 cut(s)	814, 1183
BspFNI	CGCG	3 cut(s)	49, 113, 717
BspLI	GGNNCC	6 cut(s)	117, 118, 149, 157, 1004, 1252
BspT107I	GGYRCC	1 cut(s)	155
BsrI	ACTGG	2 cut(s)	543, 1138
BssECI	CCNNGG	6 cut(s)	151, 388, 496, 703, 1006, 1184
BssNI	GRCGYC	2 cut(s)	156, 504
BssT1I	CCWWGG	2 cut(s)	703, 1006
Bst2UI	CCWGG	2 cut(s)	261, 1185
Bst4CI	ACNGT	4 cut(s)	287, 453, 1063, 1338
Bst6I	CTCTTC	2 cut(s)	337, 1039
BstACI	GRCGYC	2 cut(s)	156, 504
BstAPI	GCANNNNNTGC	2 cut(s)	1280, 1289
BstC8I	GCNNGC	2 cut(s)	896, 949
BstDEI	CTNAG	3 cut(s)	740, 822, 1170
BstDSI	CCRYGG	1 cut(s)	1006
BstENI	CCTNNNNNAGG	1 cut(s)	258
BstF5I	GGATG	2 cut(s)	694, 1243
BstFNI	CGCG	3 cut(s)	49, 113, 717
BstH2I	RGCGCY	1 cut(s)	159
BstHHI	GCGC	2 cut(s)	51, 158
BstMWI	GCNNNNNNNGC	6 cut(s)	46, 162, 171, 221, 1280, 1289
BstNI	CCWGG	2 cut(s)	261, 1185
BstNSI	RCATGY	1 cut(s)	614
BstSCI	CCNGG	2 cut(s)	259, 1183
BstSFI	CTRYAG	1 cut(s)	1059
BstSLI	GKGCMC	1 cut(s)	538
BstUI	CGCG	3 cut(s)	49, 113, 717
BstV1I	GCAGC	3 cut(s)	625, 769, 1176
BsuI	GTATCC	1 cut(s)	1148
BsuRI	GGCC	6 cut(s)	150, 165, 215, 702, 720, 1005
BtgI	CCRYGG	1 cut(s)	1006
BtgZI	GCGATG	1 cut(s)	390
BtsCI	GGATG	2 cut(s)	694, 1243
BtsIMutI	CAGTG	1 cut(s)	536
Cac8I	GCNNGC	2 cut(s)	896, 949
CfoI	GCGC	2 cut(s)	51, 158
Cfr13I	GGNCC	7 cut(s)	116, 148, 700, 707, 719, 1003, 1250
CseI	GACGC	2 cut(s)	119, 637
Csp6I	GTAC	3 cut(s)	815, 911, 992
CviAII	CATG	7 cut(s)	144, 401, 591, 611, 1007, 1016, 1289
CviQI	GTAC	3 cut(s)	815, 911, 992
DdeI	CTNAG	3 cut(s)	740, 822, 1170
DinI	GGCGCC	1 cut(s)	157
EaeI	YGGCCR	2 cut(s)	163, 213
Eam1104I	CTCTTC	2 cut(s)	337, 1039
EarI	CTCTTC	2 cut(s)	337, 1039
EciI	GGCGGA	2 cut(s)	11, 49
Eco130I	CCWWGG	2 cut(s)	703, 1006
Eco32I	GATATC	1 cut(s)	959
Eco47I	GGWCC	3 cut(s)	116, 707, 1250
EcoNI	CCTNNNNNAGG	1 cut(s)	258
EcoO109I	RGGNCCY	2 cut(s)	116, 1250
EcoRII	CCWGG	2 cut(s)	259, 1183
EcoRV	GATATC	1 cut(s)	959
EcoT14I	CCWWGG	2 cut(s)	703, 1006
EgeI	GGCGCC	1 cut(s)	157
EheI	GGCGCC	1 cut(s)	157
ErhI	CCWWGG	2 cut(s)	703, 1006
FaeI	CATG	7 cut(s)	147, 404, 594, 614, 1010, 1019, 1292
FaqI	GGGAC	4 cut(s)	129, 212, 555, 640
FatI	CATG	7 cut(s)	143, 400, 590, 610, 1006, 1015, 1288
FauI	CCCGC	1 cut(s)	106
Fnu4HI	GCNGC	8 cut(s)	25, 175, 178, 639, 718, 783, 1125, 1190
FokI	GGATG	2 cut(s)	701, 1250
Fsp4HI	GCNGC	8 cut(s)	25, 175, 178, 639, 718, 783, 1125, 1190
FspBI	CTAG	2 cut(s)	621, 915
GlaI	GCGC	2 cut(s)	50, 157
GluI	GCNGC	8 cut(s)	25, 175, 178, 639, 718, 783, 1125, 1190
GsuI	CTGGAG	1 cut(s)	243
HaeII	RGCGCY	1 cut(s)	159
HaeIII	GGCC	6 cut(s)	150, 165, 215, 702, 720, 1005
HapII	CCGG	3 cut(s)	162, 193, 209
HgaI	GACGC	2 cut(s)	119, 637
HhaI	GCGC	2 cut(s)	51, 158
Hin1I	GRCGYC	2 cut(s)	156, 504
Hin1II	CATG	7 cut(s)	147, 404, 594, 614, 1010, 1019, 1292
Hin6I	GCGC	2 cut(s)	49, 156
HinP1I	GCGC	2 cut(s)	49, 156
HinfI	GANTC	4 cut(s)	430, 443, 650, 1166
HpaII	CCGG	3 cut(s)	162, 193, 209
HphI	GGTGA	4 cut(s)	235, 243, 481, 890
Hpy166II	GTNNAC	5 cut(s)	346, 536, 737, 1013, 1319
Hpy188III	TCNNGA	2 cut(s)	654, 677
Hpy8I	GTNNAC	5 cut(s)	346, 536, 737, 1013, 1319
Hpy99I	CGWCG	2 cut(s)	113, 506
HpyAV	CCTTC	6 cut(s)	250, 578, 677, 867, 977, 1063
HpyCH4III	ACNGT	4 cut(s)	287, 453, 1063, 1338
HpyCH4IV	ACGT	1 cut(s)	504
HpyCH4V	TGCA	5 cut(s)	475, 536, 971, 1274, 1283
HpyF10VI	GCNNNNNNNGC	6 cut(s)	46, 162, 171, 221, 1280, 1289
HpyF3I	CTNAG	3 cut(s)	740, 822, 1170
HpySE526I	ACGT	1 cut(s)	504
Hsp92I	GRCGYC	2 cut(s)	156, 504
Hsp92II	CATG	7 cut(s)	147, 404, 594, 614, 1010, 1019, 1292
HspAI	GCGC	2 cut(s)	49, 156
KasI	GGCGCC	1 cut(s)	155
KflI	GGGWCCC	1 cut(s)	116
Lsp1109I	GCAGC	3 cut(s)	625, 769, 1176
LweI	GCATC	2 cut(s)	189, 1292
MaeI	CTAG	2 cut(s)	621, 915
MaeII	ACGT	1 cut(s)	504
MboII	GAAGA	4 cut(s)	197, 324, 1026, 1110
MfeI	CAATTG	1 cut(s)	1269
MhlI	GDGCHC	1 cut(s)	538
MlsI	TGGCCA	1 cut(s)	215
MluCI	AATT	4 cut(s)	563, 841, 1223, 1269
MluNI	TGGCCA	1 cut(s)	215
Mly113I	GGCGCC	1 cut(s)	156
MlyI	GAGTC	1 cut(s)	452
MmeI	TCCRAC	1 cut(s)	157
Mox20I	TGGCCA	1 cut(s)	215
MroXI	GAANNNNTTC	1 cut(s)	567
MscI	TGGCCA	1 cut(s)	215
MseI	TTAA	1 cut(s)	974
Msp20I	TGGCCA	1 cut(s)	215
MspI	CCGG	3 cut(s)	162, 193, 209
MspR9I	CCNGG	2 cut(s)	261, 1185
MunI	CAATTG	1 cut(s)	1269
Mva1269I	GAATGC	2 cut(s)	475, 744
MvaI	CCWGG	2 cut(s)	261, 1185
MvnI	CGCG	3 cut(s)	49, 113, 717
MwoI	GCNNNNNNNGC	6 cut(s)	46, 162, 171, 221, 1280, 1289
NarI	GGCGCC	1 cut(s)	156
NcoI	CCATGG	1 cut(s)	1006
NlaIII	CATG	7 cut(s)	147, 404, 594, 614, 1010, 1019, 1292
NlaIV	GGNNCC	6 cut(s)	117, 118, 149, 157, 1004, 1252
NmeAIII	GCCGAG	3 cut(s)	150, 176, 477
NspI	RCATGY	1 cut(s)	614
PciI	ACATGT	1 cut(s)	610
PcsI	WCGNNNNNNNCGW	1 cut(s)	291
PctI	GAATGC	2 cut(s)	475, 744
PdmI	GAANNNNTTC	1 cut(s)	567
PfeI	GAWTC	3 cut(s)	430, 650, 1166
PflFI	GACNNNGTC	1 cut(s)	1017
PkrI	GCNGC	8 cut(s)	26, 176, 179, 640, 719, 784, 1126, 1191
PleI	GAGTC	1 cut(s)	451
PluTI	GGCGCC	1 cut(s)	159
PpsI	GAGTC	1 cut(s)	451
PpuMI	RGGWCCY	2 cut(s)	116, 1250
PscI	ACATGT	1 cut(s)	610
Psp5II	RGGWCCY	2 cut(s)	116, 1250
Psp6I	CCWGG	2 cut(s)	259, 1183
PspGI	CCWGG	2 cut(s)	259, 1183
PspN4I	GGNNCC	6 cut(s)	117, 118, 149, 157, 1004, 1252
PspPI	GGNCC	7 cut(s)	116, 148, 700, 707, 719, 1003, 1250
PspPPI	RGGWCCY	2 cut(s)	116, 1250
PsyI	GACNNNGTC	1 cut(s)	1017
RsaI	GTAC	3 cut(s)	816, 912, 993
RsaNI	GTAC	3 cut(s)	815, 911, 992
SaqAI	TTAA	1 cut(s)	974
SatI	GCNGC	8 cut(s)	25, 175, 178, 639, 718, 783, 1125, 1190
Sau96I	GGNCC	7 cut(s)	116, 148, 700, 707, 719, 1003, 1250
ScaI	AGTACT	1 cut(s)	993
SchI	GAGTC	1 cut(s)	452
ScrFI	CCNGG	2 cut(s)	261, 1185
SduI	GDGCHC	1 cut(s)	538
SfaNI	GCATC	2 cut(s)	189, 1292
SfcI	CTRYAG	1 cut(s)	1059
SfoI	GGCGCC	1 cut(s)	157
SinI	GGWCC	3 cut(s)	116, 707, 1250
SpeI	ACTAGT	1 cut(s)	620
Sse9I	AATT	4 cut(s)	563, 841, 1223, 1269
SspDI	GGCGCC	1 cut(s)	155
SspMI	CTAG	2 cut(s)	621, 915
StyD4I	CCNGG	2 cut(s)	259, 1183
StyI	CCWWGG	2 cut(s)	703, 1006
TaaI	ACNGT	4 cut(s)	287, 453, 1063, 1338
TaiI	ACGT	1 cut(s)	507
TaqI	TCGA	3 cut(s)	183, 446, 676
TasI	AATT	4 cut(s)	563, 841, 1223, 1269
TatI	WGTACW	1 cut(s)	991
TauI	GCSGC	5 cut(s)	27, 177, 180, 720, 1127
TfiI	GAWTC	3 cut(s)	430, 650, 1166
Tru1I	TTAA	1 cut(s)	974
Tru9I	TTAA	1 cut(s)	974
TscAI	CASTG	1 cut(s)	543
TseI	GCWGC	3 cut(s)	638, 782, 1189
TspDTI	ATGAA	5 cut(s)	417, 579, 696, 996, 1104
TspRI	CASTG	1 cut(s)	543
Tth111I	GACNNNGTC	1 cut(s)	1017
VneI	GTGCAC	1 cut(s)	534
VpaK11BI	GGWCC	3 cut(s)	116, 707, 1250
XagI	CCTNNNNNAGG	1 cut(s)	258
XapI	RAATTY	1 cut(s)	1223
XceI	RCATGY	1 cut(s)	614
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1013
XmnI	GAANNNNTTC	1 cut(s)	567
XspI	CTAG	2 cut(s)	621, 915
ZraI	GACGTC	1 cut(s)	505
ZrmI	AGTACT	1 cut(s)	993

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.