Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr9

Orthogroup ID

OG0008533

Physical Location & Seq

Genomic Coordinates Reverse (-)

4676244 .. 4679328

Gene Structure 3085 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom09g06360.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1389 bp

ATGAGTATCCATCTGTCTCTCCGCCACCGCTCTTTCGCATACCTCAATCGCCGCCTCTCCTCCTCGCCCTTCTCCACCAGCACCATCTCCAAAATCCCCACCCTTTACGAACCCACCGCCGCCCCTACCACCACCCAAAACGATGCCGTCCCCACCACAACCCTCCAACTCCTCTCATGGGGCAGAGGTGCCTCCGGTCAGCTCGGCGGCGGCATCGAAGAAATCCGGCTCTACCCAACTCCAGTCGCCAACCTCGTCGTTCCCACCTCATCCTTCACTCTTTCACCAACCCAGGGCCGAATTCAAGCACCCAATTGCTCGAATCAAAAGAACAATGCCGACAGCGGTGTTGTGGAGGTGGGTATTTCTTGTGGGTTGTTCCACTCATCGCTGTTGGTGGATGGTAAGCTTTGGATTTGGGGTAAAGGCGACGGCGGTCGACTTGGTTTTGGGCATGAGAATTCTCTGTTTCTCCCGACTTTGAACCCCAATTTGGATTCGATTCGCTTCGTGGCGCTTGGCGGGTTGCATTCGGTGGCGCTCACCGCCACCGGGGAGGTCTATACTTGGGGTTATGGTGGTTTTGGTGCACTGGGGCATTCTGTTTATACTAGAGAGTTGTTCCCTAGATTGGTAAAAGGATCGTGGAGTGGGAAAATACGTCATATTTCGACTAGTGGGACGCATACTGGTGCCATCACGGAATCAGGAGAACTTTATACTTGGGGTCGAGATGAAGGGGATGGTAGATTGGGACTTGGTCCTAATCGAGGCCCAAACGAGGGTGGTGGACTCAGCATACCCTCCAAAGTAAAAGCATTACCTATGCCTGTGACTGCTGTTTCTTGCGGAGGTTTTTTCACAATGGCACTGACAGAAGATGGGGAACTTTGGAATTGGGGAGCAAACTCTAACTATGAGCTTGGAAGGGGCGATAAGGTTGGTGGTTGGACACCAAAACCAGTTCCTAGTCTTGCAGGCATTCGTATTATTCAGATAGAAAGTGGTGGATATCATTCTCTTGCGTTAACCGATGAAGGTAAAGTACTTTCTTGGGGCCATGGTGGTCATGGTCAGTTGGGCAACTCTTCTTTACAGAGTCAGAAAACACCTACAGTTGTTGAGGCTTTAACTGATGAGCGTGTTATCTATATTGCTTGCGGGGGTTCATCTTCAGCAGCTATAACAGATAAAGGAAAGTTGTTTATGTGGGGATACACCAAAGACTCTCAGCTAGGAGTACCTGGGCTGCCGGAGATCCAACCATCTCCTGTTGAAGTCAAGTTTTTAATGGAGGATGATGGACTGGGAGCCCACAATGTGCTGTCTGTTGCAGTTGGTGCTTCCCATGCCATGTGCTTGGTTTCAAGGGATGAATTGTCCAACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RCC1

Protein Analysis

463

Amino Acids

48.83

Weight (kDa)

6.5

Isoelectric Point (pI)

35.79

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008533)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G60870 AT5G60870 AT5G60870 AT5G60870
fragaria_vesca	FvH4_6g39230 FvH4_6g39230
malus_domestica	MD09G1144200.v1.1
prunus_persica	Prupe.3G183700_v2.0.a1 Prupe.3G183700_v2.0.a1
pyrus_communis	pycom09g06360 pycom17g12330
rosa_chinensis	RchiOBHm_Chr2g0153071
rosa_laevigata	RLG00000020674
rosa_multiflora	Rmu_sc0000218.1_g000027 Rmu_sc0037109.1_g000001
rosa_roxburghii	Rroxscaffold_2G00095220 Rroxscaffold_2G00095250
rosa_rugosa	Rorug02G0437100
rosa_samantha	Rh2AG499300 Rh2BG510600 Rh2CG485700 Rh2DG522300
rosa_wichuraiana	Rw2G040980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	188, 692
AccBSI	CCGCTC	1 cut(s)	30
AccI	GTMKAC	1 cut(s)	439
AclWI	GGATC	2 cut(s)	649, 1252
AcsI	RAATTY	2 cut(s)	300, 460
AcuI	CTGAAG	1 cut(s)	1158
AdeI	CACNNNGTG	1 cut(s)	1321
AfaI	GTAC	2 cut(s)	1047, 1242
AfiI	CCNNNNNNNGG	8 cut(s)	178, 293, 493, 552, 631, 770, 781, 782
AgsI	TTSAA	4 cut(s)	305, 484, 1277, 1368
AhlI	ACTAGT	1 cut(s)	674
AjnI	CCWGG	2 cut(s)	291, 1243
AjuI	GAANNNNNNNTTGG	2 cut(s)	476, 508
AluBI	AGCT	5 cut(s)	202, 409, 922, 1181, 1234
AluI	AGCT	5 cut(s)	202, 409, 922, 1181, 1234
Alw21I	GWGCWC	1 cut(s)	592
Alw26I	GTCTC	1 cut(s)	21
Alw44I	GTGCAC	1 cut(s)	588
AlwI	GGATC	2 cut(s)	649, 1252
AoxI	GGCC	3 cut(s)	295, 772, 1057
ApaLI	GTGCAC	1 cut(s)	588
ApeKI	GCWGC	2 cut(s)	1178, 1249
ApoI	RAATTY	2 cut(s)	300, 460
AspLEI	GCGC	2 cut(s)	517, 541
AspS9I	GGNCC	4 cut(s)	295, 761, 773, 1057
AsuC2I	CCSGG	1 cut(s)	553
AsuHPI	GGTGA	2 cut(s)	276, 535
AvaII	GGWCC	1 cut(s)	761
BaeGI	GKGCMC	1 cut(s)	592
BanI	GGYRCC	2 cut(s)	188, 692
BanII	GRGCYC	1 cut(s)	1315
BarI	GAAGNNNNNNTAC	2 cut(s)	1029, 1061
Bbv12I	GWGCWC	1 cut(s)	592
BbvI	GCAGC	2 cut(s)	1190, 1236
BccI	CCATC	8 cut(s)	18, 92, 395, 704, 737, 875, 1273, 1295
BceAI	ACGGC	2 cut(s)	131, 448
BciT130I	CCWGG	2 cut(s)	293, 1245
BciVI	GTATCC	2 cut(s)	17, 1208
BcnI	CCSGG	1 cut(s)	553
BcoDI	GTCTC	1 cut(s)	21
BcuI	ACTAGT	1 cut(s)	674
BfaI	CTAG	5 cut(s)	612, 627, 675, 969, 1235
BfmI	CTRYAG	1 cut(s)	1113
BfoI	RGCGCY	2 cut(s)	518, 542
BfuI	GTATCC	2 cut(s)	17, 1208
BisI	GCNGC	6 cut(s)	52, 120, 208, 211, 1179, 1250
BlsI	GCNGC	6 cut(s)	53, 121, 209, 212, 1180, 1251
BmcAI	AGTACT	1 cut(s)	1047
Bme1390I	CCNGG	3 cut(s)	293, 553, 1245
Bme18I	GGWCC	1 cut(s)	761
BmgT120I	GGNCC	4 cut(s)	295, 761, 773, 1057
BmiI	GGNNCC	4 cut(s)	190, 694, 1058, 1312
BmrFI	CCNGG	3 cut(s)	293, 553, 1245
BmrI	ACTGGG	2 cut(s)	602, 1316
BmsI	GCATC	2 cut(s)	133, 222
BmuI	ACTGGG	2 cut(s)	602, 1316
BoxI	GACNNNNGTC	1 cut(s)	435
BpmI	CTGGAG	1 cut(s)	225
BpuMI	CCSGG	1 cut(s)	553
BsaJI	CCNNGG	5 cut(s)	291, 292, 552, 1060, 1244
BsaWI	WCCGGW	1 cut(s)	194
Bsc4I	CCNNNNNNNGG	8 cut(s)	178, 293, 493, 552, 631, 770, 781, 782
Bse1I	ACTGG	5 cut(s)	242, 597, 694, 962, 1311
BseBI	CCWGG	2 cut(s)	293, 1245
BseDI	CCNNGG	5 cut(s)	291, 292, 552, 1060, 1244
BseGI	GGATG	5 cut(s)	269, 406, 748, 1303, 1378
BseLI	CCNNNNNNNGG	8 cut(s)	178, 293, 493, 552, 631, 770, 781, 782
BseMII	CTCAG	2 cut(s)	808, 1244
BseNI	ACTGG	5 cut(s)	242, 597, 694, 962, 1311
BseRI	GAGGAG	3 cut(s)	49, 52, 161
BseSI	GKGCMC	1 cut(s)	592
BseXI	GCAGC	2 cut(s)	1190, 1236
Bsh1285I	CGRYCG	1 cut(s)	439
BshFI	GGCC	3 cut(s)	297, 774, 1059
BshNI	GGYRCC	2 cut(s)	188, 692
BsiEI	CGRYCG	1 cut(s)	439
BsiHKAI	GWGCWC	1 cut(s)	592
BsiSI	CCGG	4 cut(s)	195, 226, 552, 1253
BslFI	GGGAC	3 cut(s)	134, 694, 768
BslI	CCNNNNNNNGG	8 cut(s)	178, 293, 493, 552, 631, 770, 781, 782
BsmAI	GTCTC	1 cut(s)	21
BsmFI	GGGAC	3 cut(s)	134, 694, 768
BsmI	GAATGC	3 cut(s)	529, 598, 981
BsnI	GGCC	3 cut(s)	297, 774, 1059
Bsp1286I	GDGCHC	2 cut(s)	592, 1315
Bsp143I	GATC	2 cut(s)	641, 1257
Bsp19I	CCATGG	1 cut(s)	1060
BspANI	GGCC	3 cut(s)	297, 774, 1059
BspCNI	CTCAG	2 cut(s)	807, 1243
BspLI	GGNNCC	4 cut(s)	190, 694, 1058, 1312
BspPI	GGATC	2 cut(s)	649, 1252
BspT107I	GGYRCC	2 cut(s)	188, 692
BsrBI	CCGCTC	1 cut(s)	30
BsrI	ACTGG	5 cut(s)	242, 597, 694, 962, 1311
BssECI	CCNNGG	5 cut(s)	291, 292, 552, 1060, 1244
BssMI	GATC	2 cut(s)	641, 1257
BssT1I	CCWWGG	1 cut(s)	1060
Bst2UI	CCWGG	2 cut(s)	293, 1245
Bst4CI	ACNGT	1 cut(s)	1117
Bst6I	CTCTTC	1 cut(s)	1093
BstAPI	GCANNNNNTGC	1 cut(s)	1340
BstC8I	GCNNGC	2 cut(s)	979, 1159
BstDEI	CTNAG	2 cut(s)	794, 1230
BstDSI	CCRYGG	1 cut(s)	1060
BstENI	CCTNNNNNAGG	1 cut(s)	768
BstF5I	GGATG	5 cut(s)	269, 406, 748, 1303, 1378
BstH2I	RGCGCY	2 cut(s)	518, 542
BstHHI	GCGC	2 cut(s)	517, 541
BstKTI	GATC	2 cut(s)	644, 1260
BstMAI	GTCTC	1 cut(s)	21
BstMBI	GATC	2 cut(s)	641, 1257
BstMCI	CGRYCG	1 cut(s)	439
BstMWI	GCNNNNNNNGC	3 cut(s)	545, 1340, 1349
BstNI	CCWGG	2 cut(s)	293, 1245
BstPAI	GACNNNNGTC	1 cut(s)	435
BstSCI	CCNGG	3 cut(s)	291, 551, 1243
BstSFI	CTRYAG	1 cut(s)	1113
BstSLI	GKGCMC	1 cut(s)	592
BstV1I	GCAGC	2 cut(s)	1190, 1236
BstX2I	RGATCY	1 cut(s)	1257
BstXI	CCANNNNNNTGG	1 cut(s)	1360
BstYI	RGATCY	1 cut(s)	1257
BsuI	GTATCC	2 cut(s)	17, 1208
BsuRI	GGCC	3 cut(s)	297, 774, 1059
BtgI	CCRYGG	1 cut(s)	1060
BtgZI	GCGATG	1 cut(s)	372
BtsCI	GGATG	5 cut(s)	269, 406, 748, 1303, 1378
BtsIMutI	CAGTG	2 cut(s)	590, 869
Cac8I	GCNNGC	2 cut(s)	979, 1159
CfoI	GCGC	2 cut(s)	517, 541
Cfr13I	GGNCC	4 cut(s)	295, 761, 773, 1057
CseI	GACGC	1 cut(s)	691
Csp6I	GTAC	2 cut(s)	1046, 1241
CviAII	CATG	6 cut(s)	177, 455, 1061, 1070, 1349, 1354
CviQI	GTAC	2 cut(s)	1046, 1241
DdeI	CTNAG	2 cut(s)	794, 1230
DpnI	GATC	2 cut(s)	643, 1259
DpnII	GATC	2 cut(s)	641, 1257
DraIII	CACNNNGTG	1 cut(s)	1321
Eam1104I	CTCTTC	1 cut(s)	1093
EarI	CTCTTC	1 cut(s)	1093
EciI	GGCGGA	1 cut(s)	11
Eco130I	CCWWGG	1 cut(s)	1060
Eco24I	GRGCYC	1 cut(s)	1315
Eco32I	GATATC	1 cut(s)	1013
Eco47I	GGWCC	1 cut(s)	761
Eco57I	CTGAAG	1 cut(s)	1158
EcoNI	CCTNNNNNAGG	1 cut(s)	768
EcoRI	GAATTC	2 cut(s)	300, 460
EcoRII	CCWGG	2 cut(s)	291, 1243
EcoRV	GATATC	1 cut(s)	1013
EcoT14I	CCWWGG	1 cut(s)	1060
EcoT38I	GRGCYC	1 cut(s)	1315
ErhI	CCWWGG	1 cut(s)	1060
FaeI	CATG	6 cut(s)	180, 458, 1064, 1073, 1352, 1357
FaqI	GGGAC	3 cut(s)	134, 694, 768
FatI	CATG	6 cut(s)	176, 454, 1060, 1069, 1348, 1353
FauI	CCCGC	2 cut(s)	515, 1154
FblI	GTMKAC	1 cut(s)	439
Fnu4HI	GCNGC	6 cut(s)	52, 120, 208, 211, 1179, 1250
FokI	GGATG	5 cut(s)	256, 413, 755, 1310, 1385
FriOI	GRGCYC	1 cut(s)	1315
Fsp4HI	GCNGC	6 cut(s)	52, 120, 208, 211, 1179, 1250
FspBI	CTAG	5 cut(s)	612, 627, 675, 969, 1235
GlaI	GCGC	2 cut(s)	516, 540
GluI	GCNGC	6 cut(s)	52, 120, 208, 211, 1179, 1250
GsuI	CTGGAG	1 cut(s)	225
HaeII	RGCGCY	2 cut(s)	518, 542
HaeIII	GGCC	3 cut(s)	297, 774, 1059
HapII	CCGG	4 cut(s)	195, 226, 552, 1253
HgaI	GACGC	1 cut(s)	691
HhaI	GCGC	2 cut(s)	517, 541
Hin1II	CATG	6 cut(s)	180, 458, 1064, 1073, 1352, 1357
Hin6I	GCGC	2 cut(s)	515, 539
HinP1I	GCGC	2 cut(s)	515, 539
HincII	GTYRAC	2 cut(s)	440, 1029
HindII	GTYRAC	2 cut(s)	440, 1029
HindIII	AAGCTT	1 cut(s)	407
HinfI	GANTC	7 cut(s)	322, 497, 502, 704, 792, 1099, 1226
HpaI	GTTAAC	1 cut(s)	1029
HpaII	CCGG	4 cut(s)	195, 226, 552, 1253
HphI	GGTGA	2 cut(s)	276, 535
Hpy166II	GTNNAC	4 cut(s)	440, 590, 791, 1029
Hpy188I	TCNGA	2 cut(s)	996, 1104
Hpy188III	TCNNGA	3 cut(s)	475, 708, 731
Hpy8I	GTNNAC	4 cut(s)	440, 590, 791, 1029
Hpy99I	CGWCG	2 cut(s)	260, 434
HpyAV	CCTTC	5 cut(s)	79, 283, 731, 921, 1031
HpyCH4III	ACNGT	1 cut(s)	1117
HpyCH4IV	ACGT	1 cut(s)	661
HpyCH4V	TGCA	4 cut(s)	529, 590, 977, 1334
HpyF10VI	GCNNNNNNNGC	3 cut(s)	545, 1340, 1349
HpyF3I	CTNAG	2 cut(s)	794, 1230
HpySE526I	ACGT	1 cut(s)	661
Hsp92II	CATG	6 cut(s)	180, 458, 1064, 1073, 1352, 1357
HspAI	GCGC	2 cut(s)	515, 539
KspAI	GTTAAC	1 cut(s)	1029
Kzo9I	GATC	2 cut(s)	641, 1257
LmnI	GCTCC	2 cut(s)	902, 1310
Lsp1109I	GCAGC	2 cut(s)	1190, 1236
LweI	GCATC	2 cut(s)	133, 222
MaeI	CTAG	5 cut(s)	612, 627, 675, 969, 1235
MaeII	ACGT	1 cut(s)	661
MaeIII	GTNAC	1 cut(s)	832
MalI	GATC	2 cut(s)	643, 1259
MbiI	CCGCTC	1 cut(s)	30
MboI	GATC	2 cut(s)	641, 1257
MboII	GAAGA	4 cut(s)	230, 890, 1080, 1164
MfeI	CAATTG	1 cut(s)	313
MflI	RGATCY	1 cut(s)	1257
MhlI	GDGCHC	2 cut(s)	592, 1315
MluCI	AATT	6 cut(s)	300, 313, 460, 490, 895, 1376
MlyI	GAGTC	3 cut(s)	786, 1108, 1220
MmeI	TCCRAC	3 cut(s)	190, 929, 1285
MseI	TTAA	3 cut(s)	1028, 1130, 1289
MslI	CAYNNNNRTG	1 cut(s)	690
MspA1I	CMGCKG	1 cut(s)	345
MspI	CCGG	4 cut(s)	195, 226, 552, 1253
MspR9I	CCNGG	3 cut(s)	293, 553, 1245
MunI	CAATTG	1 cut(s)	313
Mva1269I	GAATGC	3 cut(s)	529, 598, 981
MvaI	CCWGG	2 cut(s)	293, 1245
MwoI	GCNNNNNNNGC	3 cut(s)	545, 1340, 1349
NciI	CCSGG	1 cut(s)	553
NcoI	CCATGG	1 cut(s)	1060
NdeII	GATC	2 cut(s)	641, 1257
NlaIII	CATG	6 cut(s)	180, 458, 1064, 1073, 1352, 1357
NlaIV	GGNNCC	4 cut(s)	190, 694, 1058, 1312
NmeAIII	GCCGAG	1 cut(s)	183
NmuCI	GTSAC	1 cut(s)	832
PasI	CCCWGGG	1 cut(s)	292
PcsI	WCGNNNNNNNCGW	1 cut(s)	252
PctI	GAATGC	3 cut(s)	529, 598, 981
PfeI	GAWTC	4 cut(s)	322, 497, 502, 704
PflFI	GACNNNGTC	1 cut(s)	759
PkrI	GCNGC	6 cut(s)	53, 121, 209, 212, 1180, 1251
PleI	GAGTC	3 cut(s)	786, 1107, 1220
PpsI	GAGTC	3 cut(s)	786, 1107, 1220
PshAI	GACNNNNGTC	1 cut(s)	435
Psp6I	CCWGG	2 cut(s)	291, 1243
PspGI	CCWGG	2 cut(s)	291, 1243
PspN4I	GGNNCC	4 cut(s)	190, 694, 1058, 1312
PspPI	GGNCC	4 cut(s)	295, 761, 773, 1057
PsuI	RGATCY	1 cut(s)	1257
PsyI	GACNNNGTC	1 cut(s)	759
RsaI	GTAC	2 cut(s)	1047, 1242
RsaNI	GTAC	2 cut(s)	1046, 1241
RseI	CAYNNNNRTG	1 cut(s)	690
SalI	GTCGAC	1 cut(s)	438
SaqAI	TTAA	3 cut(s)	1028, 1130, 1289
SatI	GCNGC	6 cut(s)	52, 120, 208, 211, 1179, 1250
Sau3AI	GATC	2 cut(s)	641, 1257
Sau96I	GGNCC	4 cut(s)	295, 761, 773, 1057
ScaI	AGTACT	1 cut(s)	1047
SchI	GAGTC	3 cut(s)	786, 1108, 1220
ScrFI	CCNGG	3 cut(s)	293, 553, 1245
SduI	GDGCHC	2 cut(s)	592, 1315
SfaNI	GCATC	2 cut(s)	133, 222
SfcI	CTRYAG	1 cut(s)	1113
SinI	GGWCC	1 cut(s)	761
SmiMI	CAYNNNNRTG	1 cut(s)	690
SpeI	ACTAGT	1 cut(s)	674
Sse9I	AATT	6 cut(s)	300, 313, 460, 490, 895, 1376
SspMI	CTAG	5 cut(s)	612, 627, 675, 969, 1235
StyD4I	CCNGG	3 cut(s)	291, 551, 1243
StyI	CCWWGG	1 cut(s)	1060
TaaI	ACNGT	1 cut(s)	1117
TaiI	ACGT	1 cut(s)	664
TaqI	TCGA	7 cut(s)	216, 320, 439, 500, 671, 730, 769
TasI	AATT	6 cut(s)	300, 313, 460, 490, 895, 1376
TatI	WGTACW	1 cut(s)	1045
TauI	GCSGC	4 cut(s)	54, 122, 210, 213
TfiI	GAWTC	4 cut(s)	322, 497, 502, 704
Tru1I	TTAA	3 cut(s)	1028, 1130, 1289
Tru9I	TTAA	3 cut(s)	1028, 1130, 1289
TscAI	CASTG	2 cut(s)	597, 876
TseFI	GTSAC	1 cut(s)	832
TseI	GCWGC	2 cut(s)	1178, 1249
Tsp45I	GTSAC	1 cut(s)	832
TspDTI	ATGAA	4 cut(s)	750, 1050, 1158, 1389
TspGWI	ACGGA	1 cut(s)	716
TspRI	CASTG	2 cut(s)	597, 876
Tth111I	GACNNNGTC	1 cut(s)	759
VneI	GTGCAC	1 cut(s)	588
VpaK11BI	GGWCC	1 cut(s)	761
XagI	CCTNNNNNAGG	1 cut(s)	768
XapI	RAATTY	2 cut(s)	300, 460
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1067
XmiI	GTMKAC	1 cut(s)	439
XspI	CTAG	5 cut(s)	612, 627, 675, 969, 1235
ZrmI	AGTACT	1 cut(s)	1047

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.