Rh2CG485700

Regulator of chromosome condensation (RCC1) repeat

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2C
OG0008533
Physical Location & Seq
Forward (+)
65167551 .. 65171642
4092 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2CG485700.1

Sequence Viewer

Length: 1176 bp
ATGACCGCCTATCTCACTCTCCGCCGCCGCTCCCTCACGCACCTCACTCGCCACTTCTCCACCAAAACCAAAATCCCCACTCTCTATTCCCCCACCGCCACCCAAAACGACGCGGGACCCACCACAGCCCTCCAACTCCTCTCATGGGGCCGAGGCGCCTCCGGCCAACTCGGCGGCGGCATCGAAGAAATCCGGCTCTACCCATCTCCGGTGGCCAACCTCGCCGTCCCCTCCTCCTCCTTCACCCTCTCACCTACTCCAGGCAAAATCCAAACACCCAAAGACGGTAATGGCGTTTTGGAGGTGGGCATTTCTTGTGGGTTGTTTCACTCTTCGCTATTGGTGGACGGCAAGGTTTGGATTTGGGGTAAAGGCGATGGGGGTCGCCTCGGTTTTGGGCATGAAAACTCTGCGTTTCTGCCCACATTGAATCCCTATTTGGAGTCGATACGGTGCGTTTCGCTTGGTGGGTTGCATTCTGTTTCCCTCACCTCTCTCGGCGACGTCTATACTTGGGGTTATGGTGGTTTTGGTGCACTGGGACATTCTATCTATACCAGAGAATTGTTTCCAAGATTGGTTGAAGGTTCATGGAGTGGGAGAATACAACATGTTTCAACTAGTGGGACGCATACTGCTGCCATCACAGAATCAGGAGAACTTTATACTTGGGGTCGAGATGAAGGGGATGGTAGATTGGGCCTTGGTCCTAATCGCGGCCCAAATGAGGGTGGTGGACTTAGCATTCCCTCCAAAGTGAAAGCATTACCTATGCCTGTGGCTGCTGTTTCTTGCGGAGGGTTTTTCACTATGGTACTAACTGAGAATGGGGAACTTTGGAATTGGGGAGCAAACTCTAACTTTGAGCTTGGAAGGGGTGATAGGGTTGGTGGCTGGCAACCAAAACCTGTACCTAGTCTTGTAGGCATTCGTATCATTCAGGTAGCAAGCGGTGGATATCATTCTATTGCATTAACTGATGAAGGTAAAGTACTTTCTTGGGGCCATGGTGGACATGGTCAGTTGGGCAACTCTTCTGTCCAAAATCAAAAAACACCTACAGTTGTGAAGGCTCTAACTGATGAGCGTGTCATCTATATAGCTTGTGGAGGTTCATCTTCAGCAGCTATAACTGGTAAGATGATGCCTGTCTTCTTTGGGACTGTGATTTATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RCC1

Protein Analysis

391

Amino Acids

41.28

Weight (kDa)

8.97

Isoelectric Point (pI)

29.85

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
WD40_RLD PF25390 46 - 378 1.6e-66 RCC1-like domain
RCC1 PF00415 116 - 162 2.2e-08 Regulator of chromosome condensation (RCC1) repeat
RCC1 PF00415 167 - 215 9e-10 Regulator of chromosome condensation (RCC1) repeat
RCC1 PF00415 218 - 273 8.4e-09 Regulator of chromosome condensation (RCC1) repeat
RCC1_2 PF13540 260 - 287 3.4e-07 Regulator of chromosome condensation (RCC1) repeat
RCC1 PF00415 276 - 325 1.9e-11 Regulator of chromosome condensation (RCC1) repeat
RCC1_2 PF13540 312 - 341 1.5e-10 Regulator of chromosome condensation (RCC1) repeat
RCC1 PF00415 328 - 377 2.3e-13 Regulator of chromosome condensation (RCC1) repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 507
AccB1I GGYRCC 1 cut(s) 155
AccBSI CCGCTC 1 cut(s) 30
AccII CGCG 2 cut(s) 113, 717
AcoI YGGCCR 2 cut(s) 163, 213
AcuI CTGAAG 1 cut(s) 1104
AcyI GRCGYC 2 cut(s) 156, 504
AfaI GTAC 3 cut(s) 816, 912, 993
AfiI CCNNNNNNNGG 7 cut(s) 145, 208, 260, 284, 716, 727, 728
AflIII ACRYGT 1 cut(s) 610
AgsI TTSAA 3 cut(s) 430, 584, 618
AhlI ACTAGT 1 cut(s) 620
AjnI CCWGG 1 cut(s) 259
AjuI GAANNNNNNNTTGG 2 cut(s) 422, 454
AluBI AGCT 3 cut(s) 868, 1103, 1127
AluI AGCT 3 cut(s) 868, 1103, 1127
Alw21I GWGCWC 1 cut(s) 538
Alw44I GTGCAC 1 cut(s) 534
AoxI GGCC 6 cut(s) 148, 163, 213, 700, 718, 1003
ApaLI GTGCAC 1 cut(s) 534
ApeKI GCWGC 3 cut(s) 638, 782, 1124
Asp700I GAANNNNTTC 1 cut(s) 567
AspLEI GCGC 1 cut(s) 158
AspS9I GGNCC 6 cut(s) 116, 148, 700, 707, 719, 1003
AsuHPI GGTGA 4 cut(s) 235, 243, 481, 890
AvaII GGWCC 2 cut(s) 116, 707
BaeGI GKGCMC 1 cut(s) 538
BalI TGGCCA 1 cut(s) 215
BanI GGYRCC 1 cut(s) 155
BarI GAAGNNNNNNTAC 2 cut(s) 975, 1007
BbsI GAAGAC 1 cut(s) 1144
Bbv12I GWGCWC 1 cut(s) 538
BbvI GCAGC 3 cut(s) 625, 769, 1136
BccI CCATC 4 cut(s) 211, 371, 650, 683
BceAI ACGGC 2 cut(s) 209, 364
BcgI CGANNNNNNTGC 2 cut(s) 29, 63
BciT130I CCWGG 1 cut(s) 261
BcuI ACTAGT 1 cut(s) 620
BfaI CTAG 2 cut(s) 621, 915
BfmI CTRYAG 1 cut(s) 1059
BfoI RGCGCY 1 cut(s) 159
BglI GCCNNNNNGGC 1 cut(s) 171
BisI GCNGC 8 cut(s) 25, 28, 175, 178, 639, 718, 783, 1125
BlsI GCNGC 8 cut(s) 26, 29, 176, 179, 640, 719, 784, 1126
BmcAI AGTACT 1 cut(s) 993
Bme1390I CCNGG 1 cut(s) 261
Bme18I GGWCC 2 cut(s) 116, 707
BmgT120I GGNCC 6 cut(s) 116, 148, 700, 707, 719, 1003
BmiI GGNNCC 5 cut(s) 117, 118, 149, 157, 1004
BmrFI CCNGG 1 cut(s) 261
BmrI ACTGGG 1 cut(s) 548
BmsI GCATC 2 cut(s) 189, 1134
BmuI ACTGGG 1 cut(s) 548
BpiI GAAGAC 1 cut(s) 1144
BpmI CTGGAG 1 cut(s) 243
BsaHI GRCGYC 2 cut(s) 156, 504
BsaJI CCNNGG 4 cut(s) 151, 388, 703, 1006
BsaWI WCCGGW 1 cut(s) 208
Bsc4I CCNNNNNNNGG 7 cut(s) 145, 208, 260, 284, 716, 727, 728
Bse1I ACTGG 2 cut(s) 543, 1138
BseBI CCWGG 1 cut(s) 261
BseDI CCNNGG 4 cut(s) 151, 388, 703, 1006
BseGI GGATG 1 cut(s) 694
BseLI CCNNNNNNNGG 7 cut(s) 145, 208, 260, 284, 716, 727, 728
BseMII CTCAG 1 cut(s) 813
BseNI ACTGG 2 cut(s) 543, 1138
BseRI GAGGAG 3 cut(s) 128, 223, 226
BseSI GKGCMC 1 cut(s) 538
BseXI GCAGC 3 cut(s) 625, 769, 1136
Bsh1236I CGCG 2 cut(s) 113, 717
BshFI GGCC 6 cut(s) 150, 165, 215, 702, 720, 1005
BshNI GGYRCC 1 cut(s) 155
BsiHKAI GWGCWC 1 cut(s) 538
BsiSI CCGG 3 cut(s) 162, 193, 209
BslFI GGGAC 4 cut(s) 129, 212, 555, 640
BslI CCNNNNNNNGG 7 cut(s) 145, 208, 260, 284, 716, 727, 728
BsmFI GGGAC 4 cut(s) 129, 212, 555, 640
BsmI GAATGC 3 cut(s) 475, 744, 927
BsnI GGCC 6 cut(s) 150, 165, 215, 702, 720, 1005
Bsp1286I GDGCHC 1 cut(s) 538
Bsp19I CCATGG 1 cut(s) 1006
BspANI GGCC 6 cut(s) 150, 165, 215, 702, 720, 1005
BspCNI CTCAG 1 cut(s) 814
BspFNI CGCG 2 cut(s) 113, 717
BspLI GGNNCC 5 cut(s) 117, 118, 149, 157, 1004
BspT107I GGYRCC 1 cut(s) 155
BsrBI CCGCTC 1 cut(s) 30
BsrI ACTGG 2 cut(s) 543, 1138
BssECI CCNNGG 4 cut(s) 151, 388, 703, 1006
BssNI GRCGYC 2 cut(s) 156, 504
BssT1I CCWWGG 2 cut(s) 703, 1006
Bst2UI CCWGG 1 cut(s) 261
Bst4CI ACNGT 4 cut(s) 287, 453, 1063, 1165
Bst6I CTCTTC 2 cut(s) 337, 1039
BstACI GRCGYC 2 cut(s) 156, 504
BstC8I GCNNGC 2 cut(s) 896, 949
BstDEI CTNAG 2 cut(s) 740, 822
BstDSI CCRYGG 1 cut(s) 1006
BstENI CCTNNNNNAGG 1 cut(s) 258
BstF5I GGATG 1 cut(s) 694
BstFNI CGCG 2 cut(s) 113, 717
BstH2I RGCGCY 1 cut(s) 159
BstHHI GCGC 1 cut(s) 158
BstMWI GCNNNNNNNGC 3 cut(s) 162, 171, 221
BstNI CCWGG 1 cut(s) 261
BstNSI RCATGY 1 cut(s) 614
BstSCI CCNGG 1 cut(s) 259
BstSFI CTRYAG 1 cut(s) 1059
BstSLI GKGCMC 1 cut(s) 538
BstUI CGCG 2 cut(s) 113, 717
BstV1I GCAGC 3 cut(s) 625, 769, 1136
BstV2I GAAGAC 1 cut(s) 1144
BsuRI GGCC 6 cut(s) 150, 165, 215, 702, 720, 1005
BtgI CCRYGG 1 cut(s) 1006
BtgZI GCGATG 1 cut(s) 390
BtsCI GGATG 1 cut(s) 694
BtsIMutI CAGTG 1 cut(s) 536
Cac8I GCNNGC 2 cut(s) 896, 949
CfoI GCGC 1 cut(s) 158
Cfr13I GGNCC 6 cut(s) 116, 148, 700, 707, 719, 1003
CseI GACGC 2 cut(s) 119, 637
Csp6I GTAC 3 cut(s) 815, 911, 992
CviAII CATG 6 cut(s) 144, 401, 591, 611, 1007, 1016
CviQI GTAC 3 cut(s) 815, 911, 992
DdeI CTNAG 2 cut(s) 740, 822
DinI GGCGCC 1 cut(s) 157
EaeI YGGCCR 2 cut(s) 163, 213
Eam1104I CTCTTC 2 cut(s) 337, 1039
EarI CTCTTC 2 cut(s) 337, 1039
EciI GGCGGA 1 cut(s) 11
Eco130I CCWWGG 2 cut(s) 703, 1006
Eco32I GATATC 1 cut(s) 959
Eco47I GGWCC 2 cut(s) 116, 707
Eco57I CTGAAG 1 cut(s) 1104
EcoNI CCTNNNNNAGG 1 cut(s) 258
EcoO109I RGGNCCY 1 cut(s) 116
EcoRII CCWGG 1 cut(s) 259
EcoRV GATATC 1 cut(s) 959
EcoT14I CCWWGG 2 cut(s) 703, 1006
EgeI GGCGCC 1 cut(s) 157
EheI GGCGCC 1 cut(s) 157
ErhI CCWWGG 2 cut(s) 703, 1006
FaeI CATG 6 cut(s) 147, 404, 594, 614, 1010, 1019
FaqI GGGAC 4 cut(s) 129, 212, 555, 640
FatI CATG 6 cut(s) 143, 400, 590, 610, 1006, 1015
FauI CCCGC 1 cut(s) 106
Fnu4HI GCNGC 8 cut(s) 25, 28, 175, 178, 639, 718, 783, 1125
FokI GGATG 1 cut(s) 701
Fsp4HI GCNGC 8 cut(s) 25, 28, 175, 178, 639, 718, 783, 1125
FspBI CTAG 2 cut(s) 621, 915
GlaI GCGC 1 cut(s) 157
GluI GCNGC 8 cut(s) 25, 28, 175, 178, 639, 718, 783, 1125
GsuI CTGGAG 1 cut(s) 243
HaeII RGCGCY 1 cut(s) 159
HaeIII GGCC 6 cut(s) 150, 165, 215, 702, 720, 1005
HapII CCGG 3 cut(s) 162, 193, 209
HgaI GACGC 2 cut(s) 119, 637
HhaI GCGC 1 cut(s) 158
Hin1I GRCGYC 2 cut(s) 156, 504
Hin1II CATG 6 cut(s) 147, 404, 594, 614, 1010, 1019
Hin6I GCGC 1 cut(s) 156
HinP1I GCGC 1 cut(s) 156
HinfI GANTC 3 cut(s) 430, 443, 650
HpaII CCGG 3 cut(s) 162, 193, 209
HphI GGTGA 4 cut(s) 235, 243, 481, 890
Hpy166II GTNNAC 4 cut(s) 346, 536, 737, 1013
Hpy188III TCNNGA 2 cut(s) 654, 677
Hpy8I GTNNAC 4 cut(s) 346, 536, 737, 1013
Hpy99I CGWCG 2 cut(s) 113, 506
HpyAV CCTTC 6 cut(s) 250, 578, 677, 867, 977, 1063
HpyCH4III ACNGT 4 cut(s) 287, 453, 1063, 1165
HpyCH4IV ACGT 1 cut(s) 504
HpyCH4V TGCA 3 cut(s) 475, 536, 971
HpyF10VI GCNNNNNNNGC 3 cut(s) 162, 171, 221
HpyF3I CTNAG 2 cut(s) 740, 822
HpySE526I ACGT 1 cut(s) 504
Hsp92I GRCGYC 2 cut(s) 156, 504
Hsp92II CATG 6 cut(s) 147, 404, 594, 614, 1010, 1019
HspAI GCGC 1 cut(s) 156
KasI GGCGCC 1 cut(s) 155
KflI GGGWCCC 1 cut(s) 116
LmnI GCTCC 2 cut(s) 35, 848
Lsp1109I GCAGC 3 cut(s) 625, 769, 1136
LweI GCATC 2 cut(s) 189, 1134
MaeI CTAG 2 cut(s) 621, 915
MaeII ACGT 1 cut(s) 504
MbiI CCGCTC 1 cut(s) 30
MboII GAAGA 5 cut(s) 197, 324, 1026, 1110, 1144
MhlI GDGCHC 1 cut(s) 538
MlsI TGGCCA 1 cut(s) 215
MluCI AATT 2 cut(s) 563, 841
MluNI TGGCCA 1 cut(s) 215
Mly113I GGCGCC 1 cut(s) 156
MlyI GAGTC 1 cut(s) 452
MmeI TCCRAC 1 cut(s) 157
Mox20I TGGCCA 1 cut(s) 215
MroXI GAANNNNTTC 1 cut(s) 567
MscI TGGCCA 1 cut(s) 215
MseI TTAA 1 cut(s) 974
Msp20I TGGCCA 1 cut(s) 215
MspI CCGG 3 cut(s) 162, 193, 209
MspR9I CCNGG 1 cut(s) 261
Mva1269I GAATGC 3 cut(s) 475, 744, 927
MvaI CCWGG 1 cut(s) 261
MvnI CGCG 2 cut(s) 113, 717
MwoI GCNNNNNNNGC 3 cut(s) 162, 171, 221
NarI GGCGCC 1 cut(s) 156
NcoI CCATGG 1 cut(s) 1006
NlaIII CATG 6 cut(s) 147, 404, 594, 614, 1010, 1019
NlaIV GGNNCC 5 cut(s) 117, 118, 149, 157, 1004
NmeAIII GCCGAG 3 cut(s) 150, 176, 477
NspI RCATGY 1 cut(s) 614
PciI ACATGT 1 cut(s) 610
PcsI WCGNNNNNNNCGW 1 cut(s) 291
PctI GAATGC 3 cut(s) 475, 744, 927
PdmI GAANNNNTTC 1 cut(s) 567
PfeI GAWTC 2 cut(s) 430, 650
PflFI GACNNNGTC 1 cut(s) 1017
PkrI GCNGC 8 cut(s) 26, 29, 176, 179, 640, 719, 784, 1126
PleI GAGTC 1 cut(s) 451
PluTI GGCGCC 1 cut(s) 159
PpsI GAGTC 1 cut(s) 451
PpuMI RGGWCCY 1 cut(s) 116
PscI ACATGT 1 cut(s) 610
Psp5II RGGWCCY 1 cut(s) 116
Psp6I CCWGG 1 cut(s) 259
PspGI CCWGG 1 cut(s) 259
PspN4I GGNNCC 5 cut(s) 117, 118, 149, 157, 1004
PspPI GGNCC 6 cut(s) 116, 148, 700, 707, 719, 1003
PspPPI RGGWCCY 1 cut(s) 116
PsyI GACNNNGTC 1 cut(s) 1017
RsaI GTAC 3 cut(s) 816, 912, 993
RsaNI GTAC 3 cut(s) 815, 911, 992
SaqAI TTAA 1 cut(s) 974
SatI GCNGC 8 cut(s) 25, 28, 175, 178, 639, 718, 783, 1125
Sau96I GGNCC 6 cut(s) 116, 148, 700, 707, 719, 1003
ScaI AGTACT 1 cut(s) 993
SchI GAGTC 1 cut(s) 452
ScrFI CCNGG 1 cut(s) 261
SduI GDGCHC 1 cut(s) 538
SfaNI GCATC 2 cut(s) 189, 1134
SfcI CTRYAG 1 cut(s) 1059
SfoI GGCGCC 1 cut(s) 157
SinI GGWCC 2 cut(s) 116, 707
SpeI ACTAGT 1 cut(s) 620
Sse9I AATT 2 cut(s) 563, 841
SspDI GGCGCC 1 cut(s) 155
SspMI CTAG 2 cut(s) 621, 915
StyD4I CCNGG 1 cut(s) 259
StyI CCWWGG 2 cut(s) 703, 1006
TaaI ACNGT 4 cut(s) 287, 453, 1063, 1165
TaiI ACGT 1 cut(s) 507
TaqI TCGA 3 cut(s) 183, 446, 676
TasI AATT 2 cut(s) 563, 841
TatI WGTACW 1 cut(s) 991
TauI GCSGC 5 cut(s) 27, 30, 177, 180, 720
TfiI GAWTC 2 cut(s) 430, 650
Tru1I TTAA 1 cut(s) 974
Tru9I TTAA 1 cut(s) 974
TscAI CASTG 1 cut(s) 543
TseI GCWGC 3 cut(s) 638, 782, 1124
TspDTI ATGAA 5 cut(s) 417, 579, 696, 996, 1104
TspRI CASTG 1 cut(s) 543
Tth111I GACNNNGTC 1 cut(s) 1017
VneI GTGCAC 1 cut(s) 534
VpaK11BI GGWCC 2 cut(s) 116, 707
XagI CCTNNNNNAGG 1 cut(s) 258
XceI RCATGY 1 cut(s) 614
XcmI CCANNNNNNNNNTGG 1 cut(s) 1013
XmnI GAANNNNTTC 1 cut(s) 567
XspI CTAG 2 cut(s) 621, 915
ZraI GACGTC 1 cut(s) 505
ZrmI AGTACT 1 cut(s) 993
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.