Rh2DG522300

Regulator of chromosome condensation (RCC1) repeat

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
OG0008533
Physical Location & Seq
Forward (+)
74741099 .. 74744934
3836 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2DG522300.1

Sequence Viewer

Length: 1032 bp
ATGACCGCCTATCTCACTCTCCGCCGCCGCTCCCTCACGCACCTCACGCGCCACTTCTCCACCAAAACCAAAATCCCCACTCTCTATTCCCCCACCGCCACCCAAAACGACGCGGGACCCACCACAGCCCTCCAACTCCTCTCATGGGGCCGAGGCGCCTCCGGCCAACTCGGCGGCGGCATCGAAGAAATCCGGCTCTACCCATCTCCGGTGGCCAACCTCGCCGTCCCCTCCTCCTCCTTCACCCTCTCACCTACTCCAGGCAAAATCCAAACACCCAAAGACGGTAATGGCGTTTTGGAGGTGGGCATTTCTTGTGGGTTGTTTCACTCTTCGCTATTGGTGGACGGCAAGGTTTGGATTTGGGGTAAAGGCGATGGGGGTCGACTCGGTTTTGGGCATGAAAACTCTGCGTTTCTGCCCACATTGAATCCCTATTTGGAGTCGATACGGTGCGTTTCGCTTGGTGGGTTGCATTCTGTTTCCCTCACCTCTCCCGGCGACGTCTATACTTGGGGTTATGGTGGTTTTGGTGCACTGGGACATTCTATCTATACCAGAGAATTGTTTCCAAGATTGGTTGAAGGTTCATGGAGTGGGAGAATACAACATGTTTCAACTAGTGGGACGCATACTGCTGCCATCACAGAATCAGGAGAACTTTATACTTGGGGTCGAGATGAAGGGGATGGTAGATTGGGCCTTGGTCCTAATCGCGGCCCAAATGAGGGTGGTGGACTTAGCATTCCCTCCAAAGTGAAAGCATTACCTATGCCTGTGGCTGCTGTTTCTTGCGGAGGGTTTTTCACTATGGTACTAACTGAGAATGGGGAACTTTGGAATTGGGGAGCAAACTCTAACTTTGAGCTTGGAAGGGGTGATAGGGTTGGTGGCTGGCAACCAAAACCTGTACCTAGTCTTGTAGGCGTTCGTATCATTCAGATGAAGGTAAAGTACTTTCTTGGGGCCATGGTGGACATGGTCAGTTGGGCAACTCTTCTGTCCAAAATCAAAAAACACCTACAGTTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RCC1

Protein Analysis

343

Amino Acids

36.68

Weight (kDa)

9.42

Isoelectric Point (pI)

29.2

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
WD40_RLD PF25390 45 - 317 2.4e-47 RCC1-like domain
RCC1 PF00415 116 - 162 1.9e-08 Regulator of chromosome condensation (RCC1) repeat
RCC1 PF00415 167 - 215 5.3e-10 Regulator of chromosome condensation (RCC1) repeat
RCC1 PF00415 218 - 273 6.9e-09 Regulator of chromosome condensation (RCC1) repeat
RCC1_2 PF13540 260 - 287 2.8e-07 Regulator of chromosome condensation (RCC1) repeat
RCC1 PF00415 276 - 315 6.9e-06 Regulator of chromosome condensation (RCC1) repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 507
AccB1I GGYRCC 1 cut(s) 155
AccBSI CCGCTC 1 cut(s) 30
AccI GTMKAC 1 cut(s) 385
AccII CGCG 3 cut(s) 49, 113, 717
AcoI YGGCCR 2 cut(s) 163, 213
AcyI GRCGYC 2 cut(s) 156, 504
AfaI GTAC 3 cut(s) 816, 912, 956
AfiI CCNNNNNNNGG 7 cut(s) 145, 208, 260, 284, 716, 727, 728
AflIII ACRYGT 1 cut(s) 610
AgsI TTSAA 3 cut(s) 430, 584, 618
AhlI ACTAGT 1 cut(s) 620
AjnI CCWGG 1 cut(s) 259
AjuI GAANNNNNNNTTGG 2 cut(s) 422, 454
AluBI AGCT 1 cut(s) 868
AluI AGCT 1 cut(s) 868
Alw21I GWGCWC 1 cut(s) 538
Alw44I GTGCAC 1 cut(s) 534
AoxI GGCC 6 cut(s) 148, 163, 213, 700, 718, 966
ApaLI GTGCAC 1 cut(s) 534
ApeKI GCWGC 2 cut(s) 638, 782
Asp700I GAANNNNTTC 1 cut(s) 567
AspLEI GCGC 2 cut(s) 51, 158
AspS9I GGNCC 6 cut(s) 116, 148, 700, 707, 719, 966
AsuC2I CCSGG 1 cut(s) 498
AsuHPI GGTGA 4 cut(s) 235, 243, 481, 890
AvaII GGWCC 2 cut(s) 116, 707
BaeGI GKGCMC 1 cut(s) 538
BalI TGGCCA 1 cut(s) 215
BanI GGYRCC 1 cut(s) 155
BarI GAAGNNNNNNTAC 2 cut(s) 938, 970
Bbv12I GWGCWC 1 cut(s) 538
BbvI GCAGC 2 cut(s) 625, 769
BccI CCATC 4 cut(s) 211, 371, 650, 683
BceAI ACGGC 2 cut(s) 209, 364
BciT130I CCWGG 1 cut(s) 261
BcnI CCSGG 1 cut(s) 498
BcuI ACTAGT 1 cut(s) 620
BfaI CTAG 2 cut(s) 621, 915
BfmI CTRYAG 1 cut(s) 1022
BfoI RGCGCY 1 cut(s) 159
BglI GCCNNNNNGGC 1 cut(s) 171
BisI GCNGC 7 cut(s) 25, 28, 175, 178, 639, 718, 783
BlsI GCNGC 7 cut(s) 26, 29, 176, 179, 640, 719, 784
BmcAI AGTACT 1 cut(s) 956
Bme1390I CCNGG 2 cut(s) 261, 498
Bme18I GGWCC 2 cut(s) 116, 707
BmgT120I GGNCC 6 cut(s) 116, 148, 700, 707, 719, 966
BmiI GGNNCC 5 cut(s) 117, 118, 149, 157, 967
BmrFI CCNGG 2 cut(s) 261, 498
BmrI ACTGGG 1 cut(s) 548
BmsI GCATC 1 cut(s) 189
BmuI ACTGGG 1 cut(s) 548
BpmI CTGGAG 1 cut(s) 243
BpuMI CCSGG 1 cut(s) 498
BsaHI GRCGYC 2 cut(s) 156, 504
BsaJI CCNNGG 3 cut(s) 151, 703, 969
BsaWI WCCGGW 1 cut(s) 208
Bsc4I CCNNNNNNNGG 7 cut(s) 145, 208, 260, 284, 716, 727, 728
Bse1I ACTGG 1 cut(s) 543
BseBI CCWGG 1 cut(s) 261
BseDI CCNNGG 3 cut(s) 151, 703, 969
BseGI GGATG 1 cut(s) 694
BseLI CCNNNNNNNGG 7 cut(s) 145, 208, 260, 284, 716, 727, 728
BseMII CTCAG 1 cut(s) 813
BseNI ACTGG 1 cut(s) 543
BseRI GAGGAG 3 cut(s) 128, 223, 226
BseSI GKGCMC 1 cut(s) 538
BseXI GCAGC 2 cut(s) 625, 769
Bsh1236I CGCG 3 cut(s) 49, 113, 717
BshFI GGCC 6 cut(s) 150, 165, 215, 702, 720, 968
BshNI GGYRCC 1 cut(s) 155
BsiHKAI GWGCWC 1 cut(s) 538
BsiSI CCGG 4 cut(s) 162, 193, 209, 498
BslFI GGGAC 4 cut(s) 129, 212, 555, 640
BslI CCNNNNNNNGG 7 cut(s) 145, 208, 260, 284, 716, 727, 728
BsmFI GGGAC 4 cut(s) 129, 212, 555, 640
BsmI GAATGC 2 cut(s) 475, 744
BsnI GGCC 6 cut(s) 150, 165, 215, 702, 720, 968
Bsp1286I GDGCHC 1 cut(s) 538
Bsp19I CCATGG 1 cut(s) 969
BspANI GGCC 6 cut(s) 150, 165, 215, 702, 720, 968
BspCNI CTCAG 1 cut(s) 814
BspFNI CGCG 3 cut(s) 49, 113, 717
BspLI GGNNCC 5 cut(s) 117, 118, 149, 157, 967
BspT107I GGYRCC 1 cut(s) 155
BsrBI CCGCTC 1 cut(s) 30
BsrI ACTGG 1 cut(s) 543
BssECI CCNNGG 3 cut(s) 151, 703, 969
BssNI GRCGYC 2 cut(s) 156, 504
BssT1I CCWWGG 2 cut(s) 703, 969
Bst2UI CCWGG 1 cut(s) 261
Bst4CI ACNGT 3 cut(s) 287, 453, 1026
Bst6I CTCTTC 2 cut(s) 337, 1002
BstACI GRCGYC 2 cut(s) 156, 504
BstC8I GCNNGC 1 cut(s) 896
BstDEI CTNAG 2 cut(s) 740, 822
BstDSI CCRYGG 1 cut(s) 969
BstENI CCTNNNNNAGG 1 cut(s) 258
BstF5I GGATG 1 cut(s) 694
BstFNI CGCG 3 cut(s) 49, 113, 717
BstH2I RGCGCY 1 cut(s) 159
BstHHI GCGC 2 cut(s) 51, 158
BstMWI GCNNNNNNNGC 4 cut(s) 46, 162, 171, 221
BstNI CCWGG 1 cut(s) 261
BstNSI RCATGY 1 cut(s) 614
BstSCI CCNGG 2 cut(s) 259, 496
BstSFI CTRYAG 1 cut(s) 1022
BstSLI GKGCMC 1 cut(s) 538
BstUI CGCG 3 cut(s) 49, 113, 717
BstV1I GCAGC 2 cut(s) 625, 769
BsuRI GGCC 6 cut(s) 150, 165, 215, 702, 720, 968
BtgI CCRYGG 1 cut(s) 969
BtgZI GCGATG 1 cut(s) 390
BtsCI GGATG 1 cut(s) 694
BtsIMutI CAGTG 1 cut(s) 536
Cac8I GCNNGC 1 cut(s) 896
CfoI GCGC 2 cut(s) 51, 158
Cfr13I GGNCC 6 cut(s) 116, 148, 700, 707, 719, 966
CseI GACGC 2 cut(s) 119, 637
Csp6I GTAC 3 cut(s) 815, 911, 955
CviAII CATG 6 cut(s) 144, 401, 591, 611, 970, 979
CviQI GTAC 3 cut(s) 815, 911, 955
DdeI CTNAG 2 cut(s) 740, 822
DinI GGCGCC 1 cut(s) 157
EaeI YGGCCR 2 cut(s) 163, 213
Eam1104I CTCTTC 2 cut(s) 337, 1002
EarI CTCTTC 2 cut(s) 337, 1002
EciI GGCGGA 1 cut(s) 11
Eco130I CCWWGG 2 cut(s) 703, 969
Eco47I GGWCC 2 cut(s) 116, 707
EcoNI CCTNNNNNAGG 1 cut(s) 258
EcoO109I RGGNCCY 1 cut(s) 116
EcoRII CCWGG 1 cut(s) 259
EcoT14I CCWWGG 2 cut(s) 703, 969
EgeI GGCGCC 1 cut(s) 157
EheI GGCGCC 1 cut(s) 157
ErhI CCWWGG 2 cut(s) 703, 969
FaeI CATG 6 cut(s) 147, 404, 594, 614, 973, 982
FaqI GGGAC 4 cut(s) 129, 212, 555, 640
FatI CATG 6 cut(s) 143, 400, 590, 610, 969, 978
FauI CCCGC 1 cut(s) 106
FblI GTMKAC 1 cut(s) 385
Fnu4HI GCNGC 7 cut(s) 25, 28, 175, 178, 639, 718, 783
FokI GGATG 1 cut(s) 701
Fsp4HI GCNGC 7 cut(s) 25, 28, 175, 178, 639, 718, 783
FspBI CTAG 2 cut(s) 621, 915
GlaI GCGC 2 cut(s) 50, 157
GluI GCNGC 7 cut(s) 25, 28, 175, 178, 639, 718, 783
GsuI CTGGAG 1 cut(s) 243
HaeII RGCGCY 1 cut(s) 159
HaeIII GGCC 6 cut(s) 150, 165, 215, 702, 720, 968
HapII CCGG 4 cut(s) 162, 193, 209, 498
HgaI GACGC 2 cut(s) 119, 637
HhaI GCGC 2 cut(s) 51, 158
Hin1I GRCGYC 2 cut(s) 156, 504
Hin1II CATG 6 cut(s) 147, 404, 594, 614, 973, 982
Hin6I GCGC 2 cut(s) 49, 156
HinP1I GCGC 2 cut(s) 49, 156
HincII GTYRAC 1 cut(s) 386
HindII GTYRAC 1 cut(s) 386
HinfI GANTC 4 cut(s) 387, 430, 443, 650
HpaII CCGG 4 cut(s) 162, 193, 209, 498
HphI GGTGA 4 cut(s) 235, 243, 481, 890
Hpy166II GTNNAC 5 cut(s) 346, 386, 536, 737, 976
Hpy188I TCNGA 1 cut(s) 942
Hpy188III TCNNGA 2 cut(s) 654, 677
Hpy8I GTNNAC 5 cut(s) 346, 386, 536, 737, 976
Hpy99I CGWCG 2 cut(s) 113, 506
HpyAV CCTTC 5 cut(s) 250, 578, 677, 867, 940
HpyCH4III ACNGT 3 cut(s) 287, 453, 1026
HpyCH4IV ACGT 1 cut(s) 504
HpyCH4V TGCA 2 cut(s) 475, 536
HpyF10VI GCNNNNNNNGC 4 cut(s) 46, 162, 171, 221
HpyF3I CTNAG 2 cut(s) 740, 822
HpySE526I ACGT 1 cut(s) 504
Hsp92I GRCGYC 2 cut(s) 156, 504
Hsp92II CATG 6 cut(s) 147, 404, 594, 614, 973, 982
HspAI GCGC 2 cut(s) 49, 156
KasI GGCGCC 1 cut(s) 155
KflI GGGWCCC 1 cut(s) 116
LmnI GCTCC 2 cut(s) 35, 848
Lsp1109I GCAGC 2 cut(s) 625, 769
LweI GCATC 1 cut(s) 189
MaeI CTAG 2 cut(s) 621, 915
MaeII ACGT 1 cut(s) 504
MbiI CCGCTC 1 cut(s) 30
MboII GAAGA 3 cut(s) 197, 324, 989
MhlI GDGCHC 1 cut(s) 538
MlsI TGGCCA 1 cut(s) 215
MluCI AATT 2 cut(s) 563, 841
MluNI TGGCCA 1 cut(s) 215
Mly113I GGCGCC 1 cut(s) 156
MlyI GAGTC 2 cut(s) 381, 452
MmeI TCCRAC 1 cut(s) 157
Mox20I TGGCCA 1 cut(s) 215
MroXI GAANNNNTTC 1 cut(s) 567
MscI TGGCCA 1 cut(s) 215
MslI CAYNNNNRTG 1 cut(s) 941
Msp20I TGGCCA 1 cut(s) 215
MspI CCGG 4 cut(s) 162, 193, 209, 498
MspR9I CCNGG 2 cut(s) 261, 498
Mva1269I GAATGC 2 cut(s) 475, 744
MvaI CCWGG 1 cut(s) 261
MvnI CGCG 3 cut(s) 49, 113, 717
MwoI GCNNNNNNNGC 4 cut(s) 46, 162, 171, 221
NarI GGCGCC 1 cut(s) 156
NciI CCSGG 1 cut(s) 498
NcoI CCATGG 1 cut(s) 969
NlaIII CATG 6 cut(s) 147, 404, 594, 614, 973, 982
NlaIV GGNNCC 5 cut(s) 117, 118, 149, 157, 967
NmeAIII GCCGAG 2 cut(s) 150, 176
NspI RCATGY 1 cut(s) 614
PciI ACATGT 1 cut(s) 610
PcsI WCGNNNNNNNCGW 1 cut(s) 291
PctI GAATGC 2 cut(s) 475, 744
PdmI GAANNNNTTC 1 cut(s) 567
PfeI GAWTC 2 cut(s) 430, 650
PflFI GACNNNGTC 1 cut(s) 980
PkrI GCNGC 7 cut(s) 26, 29, 176, 179, 640, 719, 784
PleI GAGTC 2 cut(s) 381, 451
PluTI GGCGCC 1 cut(s) 159
PpsI GAGTC 2 cut(s) 381, 451
PpuMI RGGWCCY 1 cut(s) 116
PscI ACATGT 1 cut(s) 610
Psp5II RGGWCCY 1 cut(s) 116
Psp6I CCWGG 1 cut(s) 259
PspGI CCWGG 1 cut(s) 259
PspN4I GGNNCC 5 cut(s) 117, 118, 149, 157, 967
PspPI GGNCC 6 cut(s) 116, 148, 700, 707, 719, 966
PspPPI RGGWCCY 1 cut(s) 116
PsyI GACNNNGTC 1 cut(s) 980
RsaI GTAC 3 cut(s) 816, 912, 956
RsaNI GTAC 3 cut(s) 815, 911, 955
RseI CAYNNNNRTG 1 cut(s) 941
SalI GTCGAC 1 cut(s) 384
SatI GCNGC 7 cut(s) 25, 28, 175, 178, 639, 718, 783
Sau96I GGNCC 6 cut(s) 116, 148, 700, 707, 719, 966
ScaI AGTACT 1 cut(s) 956
SchI GAGTC 2 cut(s) 381, 452
ScrFI CCNGG 2 cut(s) 261, 498
SduI GDGCHC 1 cut(s) 538
SfaNI GCATC 1 cut(s) 189
SfcI CTRYAG 1 cut(s) 1022
SfoI GGCGCC 1 cut(s) 157
SinI GGWCC 2 cut(s) 116, 707
SmiMI CAYNNNNRTG 1 cut(s) 941
SpeI ACTAGT 1 cut(s) 620
Sse9I AATT 2 cut(s) 563, 841
SspDI GGCGCC 1 cut(s) 155
SspMI CTAG 2 cut(s) 621, 915
StyD4I CCNGG 2 cut(s) 259, 496
StyI CCWWGG 2 cut(s) 703, 969
TaaI ACNGT 3 cut(s) 287, 453, 1026
TaiI ACGT 1 cut(s) 507
TaqI TCGA 4 cut(s) 183, 385, 446, 676
TasI AATT 2 cut(s) 563, 841
TatI WGTACW 1 cut(s) 954
TauI GCSGC 5 cut(s) 27, 30, 177, 180, 720
TfiI GAWTC 2 cut(s) 430, 650
TscAI CASTG 1 cut(s) 543
TseI GCWGC 2 cut(s) 638, 782
TspDTI ATGAA 4 cut(s) 417, 579, 696, 959
TspRI CASTG 1 cut(s) 543
Tth111I GACNNNGTC 1 cut(s) 980
VneI GTGCAC 1 cut(s) 534
VpaK11BI GGWCC 2 cut(s) 116, 707
XagI CCTNNNNNAGG 1 cut(s) 258
XceI RCATGY 1 cut(s) 614
XcmI CCANNNNNNNNNTGG 1 cut(s) 976
XmiI GTMKAC 1 cut(s) 385
XmnI GAANNNNTTC 1 cut(s) 567
XspI CTAG 2 cut(s) 621, 915
ZraI GACGTC 1 cut(s) 505
ZrmI AGTACT 1 cut(s) 956
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.