Rorug02G0437100

Regulator of chromosome condensation (RCC1) repeat

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
Physical Location & Seq
Reverse (-)
55838987 .. 55840805
1819 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0437100.1

Sequence Viewer

Length: 1572 bp
ATGCATTTTGTTTCAGAAAATCTAGGATTGTCAAGCTTTGGTCTCAACGCCCATGCTCTGAGTTTTGGACTGGCACATTTCTGTAATATGGCCTCCTCTTCTGCTTCTTCTTCCTCTGACATCCCCCTAAAAGAGAAGTATGATGTCTTTCTCAGCTTCAGAGGCACCGATACCCGCAAGACTTTTACCAGCCATCTCTACAAGGCTTTGGATGATAAGAAGATTGATACCTACATAGATTACAATCTTGAGCGGGGAGAAGAAATCGCACCTGCCCTTCTAAAAGCAATCGAGAGATCAAAGATTTCCGTGATCGTTTTCTCAGAAAACTATGCTTCTTCTCGATGGTGTTTGGACGAACTTGTGCATATACTGGATTGCAGGGAAAAGTATGGACAACATGTGATACCCATCTTTTACAAAACAGTCGTATCCGATATACGACACCAGAGAGGGAGTTATGAACTTGAAAAACGTTTCAAGGATAGAGAACAGTCTGAGCGTCTTAAGTGGAAGGTTGCTTTGACAAAAGCAGCTAATCTTTCTGGGTTTGAATCAACTTCAACCAGGGATGATTCCGAATTGATTCACCAAGTTGTCCAGTTTATTTTGACGAATTTGAGTTATGAGTCCTCGAGTTATGAATTAGATGGCTTCGTTGGAGTTGGAAGTCGGGTTCAGCAAGTTGAATCATTACTATGTATTGTTCCTCGAGATGATCGTGTTCGCTCCGTTGTTATTTGGGGTATGGGAGGTATCGGCAAGACCACCCTTGCTGATGCTGTTTTTCACCGTCTCTCTTCACAATTCGATGCTTGCTGCTTTCTTGCAGATGTTAGAGAAGGTTCTGGGACCCAGAAAGAGCTAAAAGACTTGCGAAACAAGCTTCTTCGTGAATTATTAGGGGACAAAACTCTTGATATCCAGAACAAAACTATAGACCGTTCTACGGCAGTGAAACTCAGCCGTAGAAAAGTCCTGGTTGTTCTTGATGATGTTGACCGGTCAAACCAATTAGAGATGTTAGCTGGACGTGATGTTACATTCGGCTCAGGAAGTAGAATCATAATAACAACTAGAGATAAGCAACAAGCTGGAGAGATAGTACTGAGGAGAGGAGGTAACCGTGATGTTGAGATATATGGGCTTGAGAAATTAAATGATGATGAAGCTCGTCAGTTCTTCAAGTTGAATGCCTCCGAAGGTATCTGTTGTGATGTACATTCTACATATTTTTTAACAAGGATGATAGCGCATGCTGCAGGCATCCCCTTAGCCCTTAAACATTGGAGTTCCTTATCCCATAAACTTTCATGGGATGAGATGACAAAGATTATCAACGAAAAAATGGGGAGCATTTATAGAGTGAGTTATGATGTCTTGAGTATAGACGAGAAGGAAATATTTCTTGACATCGCATGTTTCCACAAAGGGAAGCAAATAAATTATGTGAGAGGACATTTAGAATATTGCCGTACACTACAAGAAAAAACATGTTTAACAACTTGCAATTCACGTTGTCAATCACTTTTGACAACGTTTGGCGCATGTTGTAGATGCCAGAGTCATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

523

Amino Acids

59.33

Weight (kDa)

7.84

Isoelectric Point (pI)

37.89

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TIR PF01582 46 - 221 9.4e-55 TIR domain
TIR_2 PF13676 49 - 142 9.9e-15 TIR domain
AAA_16 PF13191 223 - 337 4.5e-08 AAA ATPase domain
NB-ARC PF00931 238 - 397 1.6e-16 NB-ARC domain
AAA_22 PF13401 243 - 342 1e-05 AAA domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 280
Acc36I ACCTGC 1 cut(s) 280
AccB1I GGYRCC 1 cut(s) 164
AccBSI CCGCTC 1 cut(s) 253
AciI CCGC 2 cut(s) 175, 253
AclI AACGTT 2 cut(s) 475, 1538
AcsI RAATTY 1 cut(s) 616
AcuI CTGAAG 1 cut(s) 142
AfaI GTAC 3 cut(s) 1107, 1221, 1477
AfiI CCNNNNNNNGG 1 cut(s) 949
AflII CTTAAG 1 cut(s) 506
AflIII ACRYGT 2 cut(s) 400, 1493
AgeI ACCGGT 1 cut(s) 1002
AgsI TTSAA 7 cut(s) 470, 481, 554, 564, 689, 1186, 1192
AjiI CACGTC 1 cut(s) 1034
AjnI CCWGG 2 cut(s) 566, 978
AloI GAACNNNNNNTCC 2 cut(s) 660, 692
AluBI AGCT 8 cut(s) 36, 156, 536, 865, 886, 1028, 1094, 1172
AluI AGCT 8 cut(s) 36, 156, 536, 865, 886, 1028, 1094, 1172
Alw26I GTCTC 2 cut(s) 47, 800
Ama87I CYCGRG 2 cut(s) 634, 711
AoxI GGCC 1 cut(s) 90
ApeKI GCWGC 3 cut(s) 533, 819, 1259
ApoI RAATTY 1 cut(s) 616
AsiGI ACCGGT 1 cut(s) 1002
Asp700I GAANNNNTTC 2 cut(s) 585, 1404
AspLEI GCGC 2 cut(s) 1255, 1547
AspS9I GGNCC 1 cut(s) 852
AsuHPI GGTGA 2 cut(s) 581, 782
AvaI CYCGRG 2 cut(s) 634, 711
AvaII GGWCC 1 cut(s) 852
BaeI ACNNNNGTAYC 2 cut(s) 414, 447
BanI GGYRCC 1 cut(s) 164
BbvI GCAGC 3 cut(s) 545, 806, 1246
BccI CCATC 4 cut(s) 201, 339, 419, 644
BceAI ACGGC 3 cut(s) 951, 966, 1458
BciT130I CCWGG 2 cut(s) 568, 980
BciVI GTATCC 1 cut(s) 442
BcoDI GTCTC 2 cut(s) 47, 800
BfaI CTAG 2 cut(s) 23, 1077
BfmI CTRYAG 2 cut(s) 936, 1260
BfrI CTTAAG 1 cut(s) 506
BfuAI ACCTGC 1 cut(s) 280
BfuI GTATCC 1 cut(s) 442
BisI GCNGC 3 cut(s) 534, 820, 1260
BlsI GCNGC 3 cut(s) 535, 821, 1261
BmcAI AGTACT 1 cut(s) 1107
Bme1390I CCNGG 2 cut(s) 568, 980
Bme18I GGWCC 1 cut(s) 852
BmeT110I CYCGRG 2 cut(s) 634, 711
BmgBI CACGTC 1 cut(s) 1034
BmgT120I GGNCC 1 cut(s) 852
BmiI GGNNCC 3 cut(s) 166, 853, 854
BmrFI CCNGG 2 cut(s) 568, 980
BmsI GCATC 4 cut(s) 769, 802, 1275, 1547
BpmI CTGGAG 1 cut(s) 1116
Bpu10I CCTNAGC 2 cut(s) 1051, 1273
BpuEI CTTGAG 3 cut(s) 269, 1169, 1402
BsaBI GATNNNNATC 2 cut(s) 243, 410
BsaI GGTCTC 1 cut(s) 47
BsaJI CCNNGG 1 cut(s) 567
BsaWI WCCGGW 1 cut(s) 1002
BsaXI ACNNNNNCTCC 4 cut(s) 1089, 1105, 1119, 1135
Bsc4I CCNNNNNNNGG 1 cut(s) 949
Bse118I RCCGGY 1 cut(s) 1002
Bse1I ACTGG 3 cut(s) 75, 378, 601
Bse8I GATNNNNATC 2 cut(s) 243, 410
BseBI CCWGG 2 cut(s) 568, 980
BseDI CCNNGG 1 cut(s) 567
BseGI GGATG 6 cut(s) 120, 217, 577, 1251, 1266, 1324
BseJI GATNNNNATC 2 cut(s) 243, 410
BseLI CCNNNNNNNGG 1 cut(s) 949
BseMII CTCAG 7 cut(s) 50, 166, 336, 489, 976, 1065, 1100
BseNI ACTGG 3 cut(s) 75, 378, 601
BseRI GAGGAG 3 cut(s) 85, 1126, 1131
BseXI GCAGC 3 cut(s) 545, 806, 1246
BshFI GGCC 1 cut(s) 92
BshNI GGYRCC 1 cut(s) 164
BshTI ACCGGT 1 cut(s) 1002
BsiHKCI CYCGRG 2 cut(s) 634, 711
BsiSI CCGG 1 cut(s) 1003
BslFI GGGAC 2 cut(s) 865, 920
BslI CCNNNNNNNGG 1 cut(s) 949
BsmAI GTCTC 2 cut(s) 47, 800
BsmBI CGTCTC 1 cut(s) 800
BsmFI GGGAC 2 cut(s) 865, 920
BsmI GAATGC 1 cut(s) 1198
BsnI GGCC 1 cut(s) 92
Bso31I GGTCTC 1 cut(s) 47
BsoBI CYCGRG 2 cut(s) 634, 711
Bsp1407I TGTACA 1 cut(s) 1219
Bsp143I GATC 3 cut(s) 296, 312, 718
BspACI CCGC 2 cut(s) 175, 253
BspANI GGCC 1 cut(s) 92
BspCNI CTCAG 7 cut(s) 51, 165, 335, 490, 975, 1064, 1101
BspLI GGNNCC 3 cut(s) 166, 853, 854
BspMAI CTGCAG 1 cut(s) 1264
BspMI ACCTGC 1 cut(s) 280
BspT107I GGYRCC 1 cut(s) 164
BspTI CTTAAG 1 cut(s) 506
BspTNI GGTCTC 1 cut(s) 47
BsrBI CCGCTC 1 cut(s) 253
BsrFI RCCGGY 1 cut(s) 1002
BsrGI TGTACA 1 cut(s) 1219
BsrI ACTGG 3 cut(s) 75, 378, 601
BssAI RCCGGY 1 cut(s) 1002
BssECI CCNNGG 1 cut(s) 567
BssMI GATC 3 cut(s) 296, 312, 718
Bst2UI CCWGG 2 cut(s) 568, 980
Bst4CI ACNGT 5 cut(s) 427, 495, 794, 944, 1127
Bst6I CTCTTC 2 cut(s) 103, 805
BstAFI CTTAAG 1 cut(s) 506
BstAUI TGTACA 1 cut(s) 1219
BstC8I GCNNGC 3 cut(s) 817, 1257, 1264
BstDEI CTNAG 8 cut(s) 59, 152, 322, 498, 962, 1051, 1109, 1273
BstEII GGTNACC 1 cut(s) 1121
BstF5I GGATG 6 cut(s) 120, 217, 577, 1251, 1266, 1324
BstHHI GCGC 2 cut(s) 1255, 1547
BstKTI GATC 3 cut(s) 299, 315, 721
BstMAI GTCTC 2 cut(s) 47, 800
BstMBI GATC 3 cut(s) 296, 312, 718
BstMWI GCNNNNNNNGC 3 cut(s) 162, 883, 1259
BstNI CCWGG 2 cut(s) 568, 980
BstNSI RCATGY 5 cut(s) 404, 1259, 1422, 1497, 1551
BstPI GGTNACC 1 cut(s) 1121
BstSCI CCNGG 2 cut(s) 566, 978
BstSFI CTRYAG 2 cut(s) 936, 1260
BstV1I GCAGC 3 cut(s) 545, 806, 1246
BsuI GTATCC 1 cut(s) 442
BsuRI GGCC 1 cut(s) 92
BtgZI GCGATG 1 cut(s) 1399
BtrI CACGTC 1 cut(s) 1034
BtsCI GGATG 6 cut(s) 120, 217, 577, 1251, 1266, 1324
BtsI GCAGTG 1 cut(s) 960
BtsIMutI CAGTG 1 cut(s) 960
BveI ACCTGC 1 cut(s) 280
Cac8I GCNNGC 3 cut(s) 817, 1257, 1264
CfoI GCGC 2 cut(s) 1255, 1547
Cfr10I RCCGGY 1 cut(s) 1002
Cfr13I GGNCC 1 cut(s) 852
CseI GACGC 1 cut(s) 491
Csp6I GTAC 3 cut(s) 1106, 1220, 1476
CspAI ACCGGT 1 cut(s) 1002
CviAII CATG 7 cut(s) 53, 401, 1256, 1314, 1419, 1494, 1548
CviQI GTAC 3 cut(s) 1106, 1220, 1476
DdeI CTNAG 8 cut(s) 59, 152, 322, 498, 962, 1051, 1109, 1273
DpnI GATC 3 cut(s) 298, 314, 720
DpnII GATC 3 cut(s) 296, 312, 718
Eam1104I CTCTTC 2 cut(s) 103, 805
EarI CTCTTC 2 cut(s) 103, 805
Eco31I GGTCTC 1 cut(s) 47
Eco32I GATATC 1 cut(s) 922
Eco47I GGWCC 1 cut(s) 852
Eco57I CTGAAG 1 cut(s) 142
Eco88I CYCGRG 2 cut(s) 634, 711
Eco91I GGTNACC 1 cut(s) 1121
EcoO109I RGGNCCY 1 cut(s) 852
EcoO65I GGTNACC 1 cut(s) 1121
EcoRII CCWGG 2 cut(s) 566, 978
EcoRV GATATC 1 cut(s) 922
EcoT22I ATGCAT 1 cut(s) 6
Esp3I CGTCTC 1 cut(s) 800
FaeI CATG 7 cut(s) 56, 404, 1259, 1317, 1422, 1497, 1551
FaqI GGGAC 2 cut(s) 865, 920
FatI CATG 7 cut(s) 52, 400, 1255, 1313, 1418, 1493, 1547
FauI CCCGC 2 cut(s) 182, 246
Fnu4HI GCNGC 3 cut(s) 534, 820, 1260
FokI GGATG 6 cut(s) 107, 224, 584, 1253, 1258, 1331
Fsp4HI GCNGC 3 cut(s) 534, 820, 1260
FspBI CTAG 2 cut(s) 23, 1077
GlaI GCGC 2 cut(s) 1254, 1546
GluI GCNGC 3 cut(s) 534, 820, 1260
GsuI CTGGAG 1 cut(s) 1116
HaeIII GGCC 1 cut(s) 92
HapII CCGG 1 cut(s) 1003
HgaI GACGC 1 cut(s) 491
HhaI GCGC 2 cut(s) 1255, 1547
Hin1II CATG 7 cut(s) 56, 404, 1259, 1317, 1422, 1497, 1551
Hin6I GCGC 2 cut(s) 1253, 1545
HinP1I GCGC 2 cut(s) 1253, 1545
HincII GTYRAC 1 cut(s) 1000
HindII GTYRAC 1 cut(s) 1000
HindIII AAGCTT 2 cut(s) 34, 884
HinfI GANTC 7 cut(s) 554, 575, 586, 629, 689, 1062, 1564
HpaII CCGG 1 cut(s) 1003
HphI GGTGA 2 cut(s) 581, 782
Hpy166II GTNNAC 2 cut(s) 1000, 1478
Hpy188I TCNGA 9 cut(s) 16, 60, 118, 161, 325, 436, 499, 580, 1201
Hpy8I GTNNAC 2 cut(s) 1000, 1478
HpyAV CCTTC 5 cut(s) 287, 508, 836, 1196, 1390
HpyCH4III ACNGT 5 cut(s) 427, 495, 794, 944, 1127
HpyCH4IV ACGT 4 cut(s) 475, 1033, 1516, 1538
HpyCH4V TGCA 6 cut(s) 4, 367, 381, 830, 1262, 1509
HpyF10VI GCNNNNNNNGC 3 cut(s) 162, 883, 1259
HpyF3I CTNAG 8 cut(s) 59, 152, 322, 498, 962, 1051, 1109, 1273
HpySE526I ACGT 4 cut(s) 475, 1033, 1516, 1538
Hsp92II CATG 7 cut(s) 56, 404, 1259, 1317, 1422, 1497, 1551
HspAI GCGC 2 cut(s) 1253, 1545
KflI GGGWCCC 1 cut(s) 852
Kzo9I GATC 3 cut(s) 296, 312, 718
LmnI GCTCC 2 cut(s) 734, 1353
Lsp1109I GCAGC 3 cut(s) 545, 806, 1246
LweI GCATC 4 cut(s) 769, 802, 1275, 1547
MaeI CTAG 2 cut(s) 23, 1077
MaeII ACGT 4 cut(s) 475, 1033, 1516, 1538
MaeIII GTNAC 2 cut(s) 1039, 1121
MalI GATC 3 cut(s) 298, 314, 720
MbiI CCGCTC 1 cut(s) 253
MboI GATC 3 cut(s) 296, 312, 718
MboII GAAGA 9 cut(s) 90, 99, 102, 232, 272, 330, 792, 881, 1174
MluCI AATT 9 cut(s) 581, 616, 644, 806, 896, 1013, 1154, 1444, 1510
MlyI GAGTC 1 cut(s) 638
MmeI TCCRAC 2 cut(s) 640, 646
Mph1103I ATGCAT 1 cut(s) 6
MroXI GAANNNNTTC 2 cut(s) 585, 1404
MseI TTAA 6 cut(s) 507, 1157, 1238, 1281, 1499, 1570
MslI CAYNNNNRTG 1 cut(s) 697
MspCI CTTAAG 1 cut(s) 506
MspI CCGG 1 cut(s) 1003
MspR9I CCNGG 2 cut(s) 568, 980
Mva1269I GAATGC 1 cut(s) 1198
MvaI CCWGG 2 cut(s) 568, 980
MwoI GCNNNNNNNGC 3 cut(s) 162, 883, 1259
NdeII GATC 3 cut(s) 296, 312, 718
NlaIII CATG 7 cut(s) 56, 404, 1259, 1317, 1422, 1497, 1551
NlaIV GGNNCC 3 cut(s) 166, 853, 854
NsiI ATGCAT 1 cut(s) 6
NspI RCATGY 5 cut(s) 404, 1259, 1422, 1497, 1551
PaeI GCATGC 1 cut(s) 1259
PaeR7I CTCGAG 2 cut(s) 634, 711
PaqCI CACCTGC 1 cut(s) 280
PciI ACATGT 2 cut(s) 400, 1493
PcsI WCGNNNNNNNCGW 1 cut(s) 718
PctI GAATGC 1 cut(s) 1198
PdmI GAANNNNTTC 2 cut(s) 585, 1404
PfeI GAWTC 5 cut(s) 554, 575, 586, 689, 1062
PinAI ACCGGT 1 cut(s) 1002
PkrI GCNGC 3 cut(s) 535, 821, 1261
PleI GAGTC 1 cut(s) 637
PpsI GAGTC 1 cut(s) 637
PpuMI RGGWCCY 1 cut(s) 852
PscI ACATGT 2 cut(s) 400, 1493
Psp1406I AACGTT 2 cut(s) 475, 1538
Psp5II RGGWCCY 1 cut(s) 852
Psp6I CCWGG 2 cut(s) 566, 978
PspEI GGTNACC 1 cut(s) 1121
PspGI CCWGG 2 cut(s) 566, 978
PspN4I GGNNCC 3 cut(s) 166, 853, 854
PspPI GGNCC 1 cut(s) 852
PspPPI RGGWCCY 1 cut(s) 852
PspXI VCTCGAGB 1 cut(s) 634
PstI CTGCAG 1 cut(s) 1264
RsaI GTAC 3 cut(s) 1107, 1221, 1477
RsaNI GTAC 3 cut(s) 1106, 1220, 1476
RseI CAYNNNNRTG 1 cut(s) 697
SaqAI TTAA 6 cut(s) 507, 1157, 1238, 1281, 1499, 1570
SatI GCNGC 3 cut(s) 534, 820, 1260
Sau3AI GATC 3 cut(s) 296, 312, 718
Sau96I GGNCC 1 cut(s) 852
ScaI AGTACT 1 cut(s) 1107
SchI GAGTC 1 cut(s) 638
ScrFI CCNGG 2 cut(s) 568, 980
SfaNI GCATC 4 cut(s) 769, 802, 1275, 1547
SfcI CTRYAG 2 cut(s) 936, 1260
Sfr274I CTCGAG 2 cut(s) 634, 711
SinI GGWCC 1 cut(s) 852
SlaI CTCGAG 2 cut(s) 634, 711
SmiMI CAYNNNNRTG 1 cut(s) 697
SmlI CTYRAG 6 cut(s) 248, 506, 634, 711, 1148, 1381
SmoI CTYRAG 6 cut(s) 248, 506, 634, 711, 1148, 1381
SphI GCATGC 1 cut(s) 1259
Sse9I AATT 9 cut(s) 581, 616, 644, 806, 896, 1013, 1154, 1444, 1510
SsiI CCGC 2 cut(s) 175, 253
SspI AATATT 2 cut(s) 1404, 1469
SspMI CTAG 2 cut(s) 23, 1077
StyD4I CCNGG 2 cut(s) 566, 978
TaaI ACNGT 5 cut(s) 427, 495, 794, 944, 1127
TaiI ACGT 4 cut(s) 478, 1036, 1519, 1541
TaqI TCGA 5 cut(s) 291, 343, 635, 712, 810
TasI AATT 9 cut(s) 581, 616, 644, 806, 896, 1013, 1154, 1444, 1510
TatI WGTACW 2 cut(s) 1105, 1219
TfiI GAWTC 5 cut(s) 554, 575, 586, 689, 1062
Tru1I TTAA 6 cut(s) 507, 1157, 1238, 1281, 1499, 1570
Tru9I TTAA 6 cut(s) 507, 1157, 1238, 1281, 1499, 1570
TscAI CASTG 1 cut(s) 960
TseI GCWGC 3 cut(s) 533, 819, 1259
TspDTI ATGAA 4 cut(s) 477, 657, 1182, 1302
TspGWI ACGGA 2 cut(s) 298, 721
TspRI CASTG 1 cut(s) 960
Vha464I CTTAAG 1 cut(s) 506
VpaK11BI GGWCC 1 cut(s) 852
XapI RAATTY 1 cut(s) 616
XceI RCATGY 5 cut(s) 404, 1259, 1422, 1497, 1551
XhoI CTCGAG 2 cut(s) 634, 711
XmnI GAANNNNTTC 2 cut(s) 585, 1404
XspI CTAG 2 cut(s) 23, 1077
ZrmI AGTACT 1 cut(s) 1107
Zsp2I ATGCAT 1 cut(s) 6
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.