Prupe.3G213300_v2.0.a1

Ubiquitin fusion degradation protein UFD1

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp03
Physical Location & Seq
Forward (+)
21724278 .. 21727151
2874 bp
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UTR
Exon/CDS
Intron
Prupe.3G213300.1

Sequence Viewer

Length: 1713 bp
ATGGATTTTGAGCTGAGGAGAGCGAGAGAGAAGCTGGACAAGGAGCAGAAGGAGAGGAAAGAGACGGCGAGGAAGAAATTGGAAAGGGAGAGAAAGCGTAAAGAAGAAGCTAAGAAGCAAAGAGAAGCCATTGATGCTGAGAGATCCAGCCGCCTCTTCGATGCCGCCCAAGCCCAGCTTAAGGTTGATCAACAAATGCAAGAAAGTCTACTGGTCGGACGAGGAATCATGTTTTACCGTGTATTGGAAGCAGTACCTTTTCAGGGTAGTGGAGATAAGATCAAGCTCCCATCTTCCTGCTTCAATGAATTGCAAGAACAAGGTGCTTTTGATCAGGGACCTTTATACTTTAAATTGTCGTCAGTTCATCAAGAGGCTTCTTCAGAAATGATTGATGCTGATAAGGACAAGGGTAGGAGCACCCATTCAGGTGTTTTGGAGTTCACTGCCGAGGAAGGTTTTGTTGGCCTCCCCCCTCATGTATGGCAGAATTTATTTCCAGCAGAGACACCAAGTATTCCTCTGATTGAAGTTCGCTATGTCTGGCTGTCTAAAGGGACTTATGCAAAACTTCAACCTCTTAGGGCAGGTTTTTCAGACTTGCCCAATCACAAGGCCATCCTTGAAACAAGCCTTCGTCAGCATGCAACCCTTTCTGAAGATGATATATTTATAGTTAACTATGGTGAGCTGGTATATAAGTTACAGGTCCTTGAATTAAGACCCTCCTCAAGTGTATCTGTTCTAGAAACAGATATTGAAGTTGACATAGTTGGTGCTGATACAGCTTCAGAAAAGACTCATGAGAATGTCCTAAAACCACTTACATTTGGAACATCAGAATCTGGAATGGTTGATGAAGGGAACTACACGTATTACAAGTTCTCAATAGATAATAATACTTGGGAGAAAATTGCTTCGGTAGATGCGAAAGTTGAGGTGAGAATAGACGCAGAGCCAAATTCTGGGGATACTGATATTTATATTTCCAAGCATCCTCTCATATTCCCAACAAGGCACCAGCATGAATGGTCATCTCATGACATTGGTTCGAAGGTATTGATCCTTAGCTCTAAAGATAAGAGCTTGGAAGCAGGAACTTACAGTGTTGGTATTTATGGTTTTAAGGGAACAACTAAGTACCAAGTATCTGTGAATGTTCAAGATGACAGTAATCGGAAGGTAGGTCAGCAGGCTGTGTCTTCCTCATCATCAATGGAGATGGATACTGTAGAGTGTAAGAACTGTAAACGTTATATACCCAGTCGGACTATAGGACTTCATGAAGCCTATTGTAGCAGACATAATGTTGTTTGTCAGCACGCTGGTTGTGGAGTTGTTCTTAGGGTTGAGGAGGCCAAGAATCATGTGCATTGTCAGCAATGTGGGCAAGCTTTTCACCAGGGAGAAATGGAAAAGCACATGAAAGTGTTCCATGAGCCGCTTCACTGCCCCTGTGGAATTGTGCTTGAGAAGGAAGAGATGGTGCAACACCAAGCCTCAGTTTGCCCCCTGCGCCTTATTGCTTGTCGGTTCTGTGGGGACATGGTTCACGCTGGAAGTTCTGCTTTAGATGTTCGGGACAGATTGAGAGGGTTGTCTGAGCACGAGAGTGCATGCGGGTCGAGAACTGCCCCGTGTGATTCATGTGGGCGTTCTGTCATGTTGAAGGACATGGACATCCACCGGGTTGCTGTGCATCAGAAGAATTAA

Protein Analysis

571

Amino Acids

64.13

Weight (kDa)

6.2

Isoelectric Point (pI)

37.39

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0011431)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 578
AccB1I GGYRCC 1 cut(s) 1017
AccB7I CCANNNNNTGG 1 cut(s) 965
AccI GTMKAC 1 cut(s) 208
AciI CCGC 4 cut(s) 151, 165, 1442, 1620
AclI AACGTT 1 cut(s) 1252
AclWI GGATC 2 cut(s) 138, 1057
AcsI RAATTY 2 cut(s) 490, 961
AcuI CTGAAG 3 cut(s) 366, 678, 774
AfaI GTAC 2 cut(s) 255, 1142
AfiI CCNNNNNNNGG 4 cut(s) 181, 244, 263, 965
AflII CTTAAG 1 cut(s) 179
AflIII ACRYGT 1 cut(s) 870
AgsI TTSAA 8 cut(s) 304, 530, 575, 626, 716, 761, 1163, 1669
AjnI CCWGG 1 cut(s) 1401
AjuI GAANNNNNNNTTGG 2 cut(s) 447, 479
AleI CACNNNNGTG 1 cut(s) 1611
Alw21I GWGCWC 2 cut(s) 422, 1608
Alw26I GTCTC 2 cut(s) 56, 500
AlwI GGATC 2 cut(s) 138, 1057
AlwNI CAGNNNCTG 1 cut(s) 845
AoxI GGCC 3 cut(s) 466, 615, 1356
ApoI RAATTY 2 cut(s) 490, 961
Asp700I GAANNNNTTC 1 cut(s) 1430
AspLEI GCGC 1 cut(s) 1518
AspS9I GGNCC 2 cut(s) 338, 709
AsuC2I CCSGG 1 cut(s) 1688
AsuHPI GGTGA 3 cut(s) 698, 952, 1391
AsuII TTCGAA 1 cut(s) 1052
AvaII GGWCC 2 cut(s) 338, 709
BanI GGYRCC 1 cut(s) 1017
BauI CACGAG 1 cut(s) 1607
BbsI GAAGAC 1 cut(s) 1194
Bbv12I GWGCWC 2 cut(s) 422, 1608
BbvCI CCTCAGC 1 cut(s) 14
BccI CCATC 4 cut(s) 298, 626, 1216, 1477
BceAI ACGGC 1 cut(s) 81
BcgI CGANNNNNNTGC 2 cut(s) 1605, 1639
BciT130I CCWGG 1 cut(s) 1403
BciVI GTATCC 2 cut(s) 964, 1219
BclI TGATCA 2 cut(s) 187, 331
BcnI CCSGG 1 cut(s) 1688
BcoDI GTCTC 2 cut(s) 56, 500
BfaI CTAG 1 cut(s) 746
BfmI CTRYAG 2 cut(s) 1230, 1272
BfrI CTTAAG 1 cut(s) 179
BfuAI ACCTGC 1 cut(s) 578
BfuI GTATCC 2 cut(s) 964, 1219
BisI GCNGC 3 cut(s) 151, 165, 1442
BlsI GCNGC 3 cut(s) 152, 166, 1443
Bme1390I CCNGG 2 cut(s) 1403, 1688
Bme18I GGWCC 2 cut(s) 338, 709
BmgT120I GGNCC 2 cut(s) 338, 709
BmiI GGNNCC 2 cut(s) 339, 1019
BmrFI CCNGG 2 cut(s) 1403, 1688
BmrI ACTGGG 1 cut(s) 1257
BmsI GCATC 6 cut(s) 124, 151, 385, 916, 1003, 1708
BmuI ACTGGG 1 cut(s) 1257
BpiI GAAGAC 1 cut(s) 1194
Bpu10I CCTNAGC 2 cut(s) 14, 1067
Bpu14I TTCGAA 1 cut(s) 1052
BpuEI CTTGAG 2 cut(s) 715, 1490
BpuMI CCSGG 1 cut(s) 1688
BsaAI YACGTR 1 cut(s) 873
BsaJI CCNNGG 2 cut(s) 450, 1402
Bsc4I CCNNNNNNNGG 4 cut(s) 181, 244, 263, 965
Bse1I ACTGG 2 cut(s) 216, 1263
Bse3DI GCAATG 1 cut(s) 1388
BseBI CCWGG 1 cut(s) 1403
BseDI CCNNGG 2 cut(s) 450, 1402
BseGI GGATG 3 cut(s) 618, 994, 1680
BseLI CCNNNNNNNGG 4 cut(s) 181, 244, 263, 965
BseMI GCAATG 1 cut(s) 1388
BseMII CTCAG 4 cut(s) 5, 129, 1515, 1593
BseNI ACTGG 2 cut(s) 216, 1263
BseRI GAGGAG 3 cut(s) 31, 718, 1367
BseYI CCCAGC 1 cut(s) 174
BshFI GGCC 3 cut(s) 468, 617, 1358
BshNI GGYRCC 1 cut(s) 1017
BsiHKAI GWGCWC 2 cut(s) 422, 1608
BsiSI CCGG 1 cut(s) 1687
BslFI GGGAC 4 cut(s) 351, 571, 1556, 1595
BslI CCNNNNNNNGG 4 cut(s) 181, 244, 263, 965
BsmAI GTCTC 2 cut(s) 56, 500
BsmBI CGTCTC 1 cut(s) 56
BsmFI GGGAC 4 cut(s) 351, 571, 1556, 1595
BsnI GGCC 3 cut(s) 468, 617, 1358
Bsp119I TTCGAA 1 cut(s) 1052
Bsp1286I GDGCHC 2 cut(s) 422, 1608
Bsp143I GATC 5 cut(s) 143, 187, 279, 331, 1062
BspACI CCGC 4 cut(s) 151, 165, 1442, 1620
BspANI GGCC 3 cut(s) 468, 617, 1358
BspCNI CTCAG 4 cut(s) 6, 130, 1514, 1594
BspHI TCATGA 3 cut(s) 802, 1039, 1282
BspLI GGNNCC 2 cut(s) 339, 1019
BspMI ACCTGC 1 cut(s) 578
BspPI GGATC 2 cut(s) 138, 1057
BspT104I TTCGAA 1 cut(s) 1052
BspT107I GGYRCC 1 cut(s) 1017
BspTI CTTAAG 1 cut(s) 179
BsrDI GCAATG 1 cut(s) 1388
BsrI ACTGG 2 cut(s) 216, 1263
BssECI CCNNGG 2 cut(s) 450, 1402
BssMI GATC 5 cut(s) 143, 187, 279, 331, 1062
BssSI CACGAG 1 cut(s) 1607
Bst2BI CACGAG 1 cut(s) 1607
Bst2UI CCWGG 1 cut(s) 1403
Bst4CI ACNGT 5 cut(s) 239, 1106, 1172, 1231, 1247
Bst6I CTCTTC 2 cut(s) 161, 1473
BstAFI CTTAAG 1 cut(s) 179
BstBAI YACGTR 1 cut(s) 873
BstBI TTCGAA 1 cut(s) 1052
BstC8I GCNNGC 5 cut(s) 645, 1194, 1323, 1392, 1618
BstDEI CTNAG 9 cut(s) 14, 111, 138, 581, 1067, 1137, 1343, 1501, 1602
BstF5I GGATG 3 cut(s) 618, 994, 1680
BstHHI GCGC 1 cut(s) 1518
BstKTI GATC 5 cut(s) 146, 190, 282, 334, 1065
BstMAI GTCTC 2 cut(s) 56, 500
BstMBI GATC 5 cut(s) 143, 187, 279, 331, 1062
BstMWI GCNNNNNNNGC 6 cut(s) 134, 170, 785, 1378, 1387, 1515
BstNI CCWGG 1 cut(s) 1403
BstNSI RCATGY 2 cut(s) 647, 1620
BstSCI CCNGG 2 cut(s) 1401, 1686
BstSFI CTRYAG 2 cut(s) 1230, 1272
BstV2I GAAGAC 1 cut(s) 1194
BstX2I RGATCY 1 cut(s) 143
BstYI RGATCY 1 cut(s) 143
BsuI GTATCC 2 cut(s) 964, 1219
BsuRI GGCC 3 cut(s) 468, 617, 1358
BtsCI GGATG 3 cut(s) 618, 994, 1680
BtsI GCAGTG 2 cut(s) 444, 1447
BtsIMutI CAGTG 3 cut(s) 444, 1111, 1447
BveI ACCTGC 1 cut(s) 578
Cac8I GCNNGC 5 cut(s) 645, 1194, 1323, 1392, 1618
CaiI CAGNNNCTG 1 cut(s) 845
CciI TCATGA 3 cut(s) 802, 1039, 1282
CfoI GCGC 1 cut(s) 1518
Cfr13I GGNCC 2 cut(s) 338, 709
CseI GACGC 1 cut(s) 959
Csp6I GTAC 2 cut(s) 254, 1141
CviQI GTAC 2 cut(s) 254, 1141
DdeI CTNAG 9 cut(s) 14, 111, 138, 581, 1067, 1137, 1343, 1501, 1602
DpnI GATC 5 cut(s) 145, 189, 281, 333, 1064
DpnII GATC 5 cut(s) 143, 187, 279, 331, 1062
DraI TTTAAA 1 cut(s) 352
Eam1104I CTCTTC 2 cut(s) 161, 1473
EarI CTCTTC 2 cut(s) 161, 1473
Eco47I GGWCC 2 cut(s) 338, 709
Eco57I CTGAAG 3 cut(s) 366, 678, 774
EcoO109I RGGNCCY 2 cut(s) 338, 709
EcoRII CCWGG 1 cut(s) 1401
Esp3I CGTCTC 1 cut(s) 56
FalI AAGNNNNNCTT 4 cut(s) 162, 194, 1552, 1584
FaqI GGGAC 4 cut(s) 351, 571, 1556, 1595
FauI CCCGC 1 cut(s) 1613
FbaI TGATCA 2 cut(s) 187, 331
FblI GTMKAC 1 cut(s) 208
Fnu4HI GCNGC 3 cut(s) 151, 165, 1442
FokI GGATG 3 cut(s) 605, 981, 1667
Fsp4HI GCNGC 3 cut(s) 151, 165, 1442
FspBI CTAG 1 cut(s) 746
GlaI GCGC 1 cut(s) 1517
GluI GCNGC 3 cut(s) 151, 165, 1442
GsaI CCCAGC 1 cut(s) 178
HaeIII GGCC 3 cut(s) 468, 617, 1358
HapII CCGG 1 cut(s) 1687
HgaI GACGC 1 cut(s) 959
HhaI GCGC 1 cut(s) 1518
Hin6I GCGC 1 cut(s) 1516
HinP1I GCGC 1 cut(s) 1516
HincII GTYRAC 2 cut(s) 679, 766
HindII GTYRAC 2 cut(s) 679, 766
HindIII AAGCTT 1 cut(s) 1392
HinfI GANTC 5 cut(s) 225, 799, 842, 1363, 1643
HpaI GTTAAC 1 cut(s) 679
HpaII CCGG 1 cut(s) 1687
HphI GGTGA 3 cut(s) 698, 952, 1391
Hpy166II GTNNAC 6 cut(s) 209, 444, 679, 766, 1250, 1552
Hpy188III TCNNGA 9 cut(s) 371, 746, 803, 846, 1040, 1163, 1283, 1580, 1626
Hpy8I GTNNAC 6 cut(s) 209, 444, 679, 766, 1250, 1552
HpyAV CCTTC 8 cut(s) 43, 449, 644, 854, 1048, 1174, 1468, 1663
HpyCH4III ACNGT 5 cut(s) 239, 1106, 1172, 1231, 1247
HpyCH4IV ACGT 2 cut(s) 872, 1252
HpyCH4V TGCA 8 cut(s) 199, 313, 566, 647, 1372, 1489, 1616, 1699
HpyF10VI GCNNNNNNNGC 6 cut(s) 134, 170, 785, 1378, 1387, 1515
HpyF3I CTNAG 9 cut(s) 14, 111, 138, 581, 1067, 1137, 1343, 1501, 1602
HpySE526I ACGT 2 cut(s) 872, 1252
HspAI GCGC 1 cut(s) 1516
Ksp22I TGATCA 2 cut(s) 187, 331
KspAI GTTAAC 1 cut(s) 679
Kzo9I GATC 5 cut(s) 143, 187, 279, 331, 1062
LmnI GCTCC 3 cut(s) 43, 291, 417
LweI GCATC 6 cut(s) 124, 151, 385, 916, 1003, 1708
MaeI CTAG 1 cut(s) 746
MaeII ACGT 2 cut(s) 872, 1252
MaeIII GTNAC 1 cut(s) 702
MalI GATC 5 cut(s) 145, 189, 281, 333, 1064
MboI GATC 5 cut(s) 143, 187, 279, 331, 1062
MboII GAAGA 8 cut(s) 85, 116, 148, 285, 372, 671, 1194, 1490
MflI RGATCY 1 cut(s) 143
MhlI GDGCHC 2 cut(s) 422, 1608
MluCI AATT 9 cut(s) 77, 308, 353, 490, 716, 912, 961, 1461, 1708
MlyI GAGTC 1 cut(s) 793
MmeI TCCRAC 2 cut(s) 196, 1247
MroXI GAANNNNTTC 1 cut(s) 1430
MseI TTAA 6 cut(s) 180, 351, 678, 719, 1125, 1711
MslI CAYNNNNRTG 5 cut(s) 429, 807, 1023, 1427, 1611
MspCI CTTAAG 1 cut(s) 179
MspI CCGG 1 cut(s) 1687
MspR9I CCNGG 2 cut(s) 1403, 1688
MvaI CCWGG 1 cut(s) 1403
MwoI GCNNNNNNNGC 6 cut(s) 134, 170, 785, 1378, 1387, 1515
NciI CCSGG 1 cut(s) 1688
NdeII GATC 5 cut(s) 143, 187, 279, 331, 1062
NlaIV GGNNCC 2 cut(s) 339, 1019
NmeAIII GCCGAG 1 cut(s) 475
NspI RCATGY 2 cut(s) 647, 1620
NspV TTCGAA 1 cut(s) 1052
OliI CACNNNNGTG 1 cut(s) 1611
PaeI GCATGC 2 cut(s) 647, 1620
PagI TCATGA 3 cut(s) 802, 1039, 1282
PcsI WCGNNNNNNNCGW 1 cut(s) 926
PdmI GAANNNNTTC 1 cut(s) 1430
PfeI GAWTC 4 cut(s) 225, 842, 1363, 1643
PflMI CCANNNNNTGG 1 cut(s) 965
PkrI GCNGC 3 cut(s) 152, 166, 1443
PleI GAGTC 1 cut(s) 793
PpsI GAGTC 1 cut(s) 793
Ppu21I YACGTR 1 cut(s) 873
PpuMI RGGWCCY 2 cut(s) 338, 709
Psp1406I AACGTT 1 cut(s) 1252
Psp5II RGGWCCY 2 cut(s) 338, 709
Psp6I CCWGG 1 cut(s) 1401
PspFI CCCAGC 1 cut(s) 174
PspGI CCWGG 1 cut(s) 1401
PspN4I GGNNCC 2 cut(s) 339, 1019
PspPI GGNCC 2 cut(s) 338, 709
PspPPI RGGWCCY 2 cut(s) 338, 709
PsrI GAACNNNNNNTAC 2 cut(s) 866, 898
PstNI CAGNNNCTG 1 cut(s) 845
PsuI RGATCY 1 cut(s) 143
RsaI GTAC 2 cut(s) 255, 1142
RsaNI GTAC 2 cut(s) 254, 1141
RseI CAYNNNNRTG 5 cut(s) 429, 807, 1023, 1427, 1611
SaqAI TTAA 6 cut(s) 180, 351, 678, 719, 1125, 1711
SatI GCNGC 3 cut(s) 151, 165, 1442
Sau3AI GATC 5 cut(s) 143, 187, 279, 331, 1062
Sau96I GGNCC 2 cut(s) 338, 709
SchI GAGTC 1 cut(s) 793
ScrFI CCNGG 2 cut(s) 1403, 1688
SduI GDGCHC 2 cut(s) 422, 1608
SfaNI GCATC 6 cut(s) 124, 151, 385, 916, 1003, 1708
SfcI CTRYAG 2 cut(s) 1230, 1272
SfuI TTCGAA 1 cut(s) 1052
SinI GGWCC 2 cut(s) 338, 709
SmiMI CAYNNNNRTG 5 cut(s) 429, 807, 1023, 1427, 1611
SmlI CTYRAG 3 cut(s) 179, 730, 1469
SmoI CTYRAG 3 cut(s) 179, 730, 1469
SphI GCATGC 2 cut(s) 647, 1620
Sse9I AATT 9 cut(s) 77, 308, 353, 490, 716, 912, 961, 1461, 1708
SsiI CCGC 4 cut(s) 151, 165, 1442, 1620
SspMI CTAG 1 cut(s) 746
StyD4I CCNGG 2 cut(s) 1401, 1686
TaaI ACNGT 5 cut(s) 239, 1106, 1172, 1231, 1247
TaiI ACGT 2 cut(s) 875, 1255
TaqI TCGA 3 cut(s) 159, 1052, 1625
TasI AATT 9 cut(s) 77, 308, 353, 490, 716, 912, 961, 1461, 1708
TauI GCSGC 3 cut(s) 153, 167, 1444
TfiI GAWTC 4 cut(s) 225, 842, 1363, 1643
Tru1I TTAA 6 cut(s) 180, 351, 678, 719, 1125, 1711
Tru9I TTAA 6 cut(s) 180, 351, 678, 719, 1125, 1711
TscAI CASTG 3 cut(s) 451, 1111, 1454
TspDTI ATGAA 8 cut(s) 321, 356, 873, 1041, 1271, 1299, 1439, 1635
TspRI CASTG 3 cut(s) 451, 1111, 1454
Van91I CCANNNNNTGG 1 cut(s) 965
Vha464I CTTAAG 1 cut(s) 179
VpaK11BI GGWCC 2 cut(s) 338, 709
XapI RAATTY 2 cut(s) 490, 961
XbaI TCTAGA 1 cut(s) 745
XceI RCATGY 2 cut(s) 647, 1620
XmiI GTMKAC 1 cut(s) 208
XmnI GAANNNNTTC 1 cut(s) 1430
XspI CTAG 1 cut(s) 746
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.