Ubiquitin fusion degradation protein UFD1
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT4G15420 AT4G15420 |
| fragaria_vesca | FvH4_6g42660 |
| malus_domestica | MD09G1071000.v1.1 MD17G1101600.v1.1 |
| prunus_persica | Prupe.3G213300_v2.0.a1 |
| pyrus_communis | pycom09g03500 pycom17g09600 |
| rosa_chinensis | RchiOBHm_Chr2g0158561 |
| rosa_laevigata | RLG00000021095 |
| rosa_multiflora | Rmu_sc0017496.1_g000003 Rmu_sc0040507.1_g000001 Rmu_sc0040508.1_g000001 |
| rosa_roxburghii | Rroxscaffold_2G00091220 |
| rosa_rugosa | Rorug02G0469900 |
| rosa_samantha | Rh2AG536100 Rh2BG549200 Rh2CG519700 Rh2DG558900 |
| rosa_wichuraiana | Rw2G044380 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 1 cut(s) | 578 |
| AccB1I | GGYRCC | 1 cut(s) | 1017 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 965 |
| AccI | GTMKAC | 1 cut(s) | 208 |
| AciI | CCGC | 4 cut(s) | 151, 165, 1442, 1620 |
| AclI | AACGTT | 1 cut(s) | 1252 |
| AclWI | GGATC | 2 cut(s) | 138, 1057 |
| AcsI | RAATTY | 2 cut(s) | 490, 961 |
| AcuI | CTGAAG | 3 cut(s) | 366, 678, 774 |
| AfaI | GTAC | 2 cut(s) | 255, 1142 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 181, 244, 263, 965 |
| AflII | CTTAAG | 1 cut(s) | 179 |
| AflIII | ACRYGT | 1 cut(s) | 870 |
| AgsI | TTSAA | 8 cut(s) | 304, 530, 575, 626, 716, 761, 1163, 1669 |
| AjnI | CCWGG | 1 cut(s) | 1401 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 447, 479 |
| AleI | CACNNNNGTG | 1 cut(s) | 1611 |
| Alw21I | GWGCWC | 2 cut(s) | 422, 1608 |
| Alw26I | GTCTC | 2 cut(s) | 56, 500 |
| AlwI | GGATC | 2 cut(s) | 138, 1057 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 845 |
| AoxI | GGCC | 3 cut(s) | 466, 615, 1356 |
| ApoI | RAATTY | 2 cut(s) | 490, 961 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 1430 |
| AspLEI | GCGC | 1 cut(s) | 1518 |
| AspS9I | GGNCC | 2 cut(s) | 338, 709 |
| AsuC2I | CCSGG | 1 cut(s) | 1688 |
| AsuHPI | GGTGA | 3 cut(s) | 698, 952, 1391 |
| AsuII | TTCGAA | 1 cut(s) | 1052 |
| AvaII | GGWCC | 2 cut(s) | 338, 709 |
| BanI | GGYRCC | 1 cut(s) | 1017 |
| BauI | CACGAG | 1 cut(s) | 1607 |
| BbsI | GAAGAC | 1 cut(s) | 1194 |
| Bbv12I | GWGCWC | 2 cut(s) | 422, 1608 |
| BbvCI | CCTCAGC | 1 cut(s) | 14 |
| BccI | CCATC | 4 cut(s) | 298, 626, 1216, 1477 |
| BceAI | ACGGC | 1 cut(s) | 81 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 1605, 1639 |
| BciT130I | CCWGG | 1 cut(s) | 1403 |
| BciVI | GTATCC | 2 cut(s) | 964, 1219 |
| BclI | TGATCA | 2 cut(s) | 187, 331 |
| BcnI | CCSGG | 1 cut(s) | 1688 |
| BcoDI | GTCTC | 2 cut(s) | 56, 500 |
| BfaI | CTAG | 1 cut(s) | 746 |
| BfmI | CTRYAG | 2 cut(s) | 1230, 1272 |
| BfrI | CTTAAG | 1 cut(s) | 179 |
| BfuAI | ACCTGC | 1 cut(s) | 578 |
| BfuI | GTATCC | 2 cut(s) | 964, 1219 |
| BisI | GCNGC | 3 cut(s) | 151, 165, 1442 |
| BlsI | GCNGC | 3 cut(s) | 152, 166, 1443 |
| Bme1390I | CCNGG | 2 cut(s) | 1403, 1688 |
| Bme18I | GGWCC | 2 cut(s) | 338, 709 |
| BmgT120I | GGNCC | 2 cut(s) | 338, 709 |
| BmiI | GGNNCC | 2 cut(s) | 339, 1019 |
| BmrFI | CCNGG | 2 cut(s) | 1403, 1688 |
| BmrI | ACTGGG | 1 cut(s) | 1257 |
| BmsI | GCATC | 6 cut(s) | 124, 151, 385, 916, 1003, 1708 |
| BmuI | ACTGGG | 1 cut(s) | 1257 |
| BpiI | GAAGAC | 1 cut(s) | 1194 |
| Bpu10I | CCTNAGC | 2 cut(s) | 14, 1067 |
| Bpu14I | TTCGAA | 1 cut(s) | 1052 |
| BpuEI | CTTGAG | 2 cut(s) | 715, 1490 |
| BpuMI | CCSGG | 1 cut(s) | 1688 |
| BsaAI | YACGTR | 1 cut(s) | 873 |
| BsaJI | CCNNGG | 2 cut(s) | 450, 1402 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 181, 244, 263, 965 |
| Bse1I | ACTGG | 2 cut(s) | 216, 1263 |
| Bse3DI | GCAATG | 1 cut(s) | 1388 |
| BseBI | CCWGG | 1 cut(s) | 1403 |
| BseDI | CCNNGG | 2 cut(s) | 450, 1402 |
| BseGI | GGATG | 3 cut(s) | 618, 994, 1680 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 181, 244, 263, 965 |
| BseMI | GCAATG | 1 cut(s) | 1388 |
| BseMII | CTCAG | 4 cut(s) | 5, 129, 1515, 1593 |
| BseNI | ACTGG | 2 cut(s) | 216, 1263 |
| BseRI | GAGGAG | 3 cut(s) | 31, 718, 1367 |
| BseYI | CCCAGC | 1 cut(s) | 174 |
| BshFI | GGCC | 3 cut(s) | 468, 617, 1358 |
| BshNI | GGYRCC | 1 cut(s) | 1017 |
| BsiHKAI | GWGCWC | 2 cut(s) | 422, 1608 |
| BsiSI | CCGG | 1 cut(s) | 1687 |
| BslFI | GGGAC | 4 cut(s) | 351, 571, 1556, 1595 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 181, 244, 263, 965 |
| BsmAI | GTCTC | 2 cut(s) | 56, 500 |
| BsmBI | CGTCTC | 1 cut(s) | 56 |
| BsmFI | GGGAC | 4 cut(s) | 351, 571, 1556, 1595 |
| BsnI | GGCC | 3 cut(s) | 468, 617, 1358 |
| Bsp119I | TTCGAA | 1 cut(s) | 1052 |
| Bsp1286I | GDGCHC | 2 cut(s) | 422, 1608 |
| Bsp143I | GATC | 5 cut(s) | 143, 187, 279, 331, 1062 |
| BspACI | CCGC | 4 cut(s) | 151, 165, 1442, 1620 |
| BspANI | GGCC | 3 cut(s) | 468, 617, 1358 |
| BspCNI | CTCAG | 4 cut(s) | 6, 130, 1514, 1594 |
| BspHI | TCATGA | 3 cut(s) | 802, 1039, 1282 |
| BspLI | GGNNCC | 2 cut(s) | 339, 1019 |
| BspMI | ACCTGC | 1 cut(s) | 578 |
| BspPI | GGATC | 2 cut(s) | 138, 1057 |
| BspT104I | TTCGAA | 1 cut(s) | 1052 |
| BspT107I | GGYRCC | 1 cut(s) | 1017 |
| BspTI | CTTAAG | 1 cut(s) | 179 |
| BsrDI | GCAATG | 1 cut(s) | 1388 |
| BsrI | ACTGG | 2 cut(s) | 216, 1263 |
| BssECI | CCNNGG | 2 cut(s) | 450, 1402 |
| BssMI | GATC | 5 cut(s) | 143, 187, 279, 331, 1062 |
| BssSI | CACGAG | 1 cut(s) | 1607 |
| Bst2BI | CACGAG | 1 cut(s) | 1607 |
| Bst2UI | CCWGG | 1 cut(s) | 1403 |
| Bst4CI | ACNGT | 5 cut(s) | 239, 1106, 1172, 1231, 1247 |
| Bst6I | CTCTTC | 2 cut(s) | 161, 1473 |
| BstAFI | CTTAAG | 1 cut(s) | 179 |
| BstBAI | YACGTR | 1 cut(s) | 873 |
| BstBI | TTCGAA | 1 cut(s) | 1052 |
| BstC8I | GCNNGC | 5 cut(s) | 645, 1194, 1323, 1392, 1618 |
| BstDEI | CTNAG | 9 cut(s) | 14, 111, 138, 581, 1067, 1137, 1343, 1501, 1602 |
| BstF5I | GGATG | 3 cut(s) | 618, 994, 1680 |
| BstHHI | GCGC | 1 cut(s) | 1518 |
| BstKTI | GATC | 5 cut(s) | 146, 190, 282, 334, 1065 |
| BstMAI | GTCTC | 2 cut(s) | 56, 500 |
| BstMBI | GATC | 5 cut(s) | 143, 187, 279, 331, 1062 |
| BstMWI | GCNNNNNNNGC | 6 cut(s) | 134, 170, 785, 1378, 1387, 1515 |
| BstNI | CCWGG | 1 cut(s) | 1403 |
| BstNSI | RCATGY | 2 cut(s) | 647, 1620 |
| BstSCI | CCNGG | 2 cut(s) | 1401, 1686 |
| BstSFI | CTRYAG | 2 cut(s) | 1230, 1272 |
| BstV2I | GAAGAC | 1 cut(s) | 1194 |
| BstX2I | RGATCY | 1 cut(s) | 143 |
| BstYI | RGATCY | 1 cut(s) | 143 |
| BsuI | GTATCC | 2 cut(s) | 964, 1219 |
| BsuRI | GGCC | 3 cut(s) | 468, 617, 1358 |
| BtsCI | GGATG | 3 cut(s) | 618, 994, 1680 |
| BtsI | GCAGTG | 2 cut(s) | 444, 1447 |
| BtsIMutI | CAGTG | 3 cut(s) | 444, 1111, 1447 |
| BveI | ACCTGC | 1 cut(s) | 578 |
| Cac8I | GCNNGC | 5 cut(s) | 645, 1194, 1323, 1392, 1618 |
| CaiI | CAGNNNCTG | 1 cut(s) | 845 |
| CciI | TCATGA | 3 cut(s) | 802, 1039, 1282 |
| CfoI | GCGC | 1 cut(s) | 1518 |
| Cfr13I | GGNCC | 2 cut(s) | 338, 709 |
| CseI | GACGC | 1 cut(s) | 959 |
| Csp6I | GTAC | 2 cut(s) | 254, 1141 |
| CviQI | GTAC | 2 cut(s) | 254, 1141 |
| DdeI | CTNAG | 9 cut(s) | 14, 111, 138, 581, 1067, 1137, 1343, 1501, 1602 |
| DpnI | GATC | 5 cut(s) | 145, 189, 281, 333, 1064 |
| DpnII | GATC | 5 cut(s) | 143, 187, 279, 331, 1062 |
| DraI | TTTAAA | 1 cut(s) | 352 |
| Eam1104I | CTCTTC | 2 cut(s) | 161, 1473 |
| EarI | CTCTTC | 2 cut(s) | 161, 1473 |
| Eco47I | GGWCC | 2 cut(s) | 338, 709 |
| Eco57I | CTGAAG | 3 cut(s) | 366, 678, 774 |
| EcoO109I | RGGNCCY | 2 cut(s) | 338, 709 |
| EcoRII | CCWGG | 1 cut(s) | 1401 |
| Esp3I | CGTCTC | 1 cut(s) | 56 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 162, 194, 1552, 1584 |
| FaqI | GGGAC | 4 cut(s) | 351, 571, 1556, 1595 |
| FauI | CCCGC | 1 cut(s) | 1613 |
| FbaI | TGATCA | 2 cut(s) | 187, 331 |
| FblI | GTMKAC | 1 cut(s) | 208 |
| Fnu4HI | GCNGC | 3 cut(s) | 151, 165, 1442 |
| FokI | GGATG | 3 cut(s) | 605, 981, 1667 |
| Fsp4HI | GCNGC | 3 cut(s) | 151, 165, 1442 |
| FspBI | CTAG | 1 cut(s) | 746 |
| GlaI | GCGC | 1 cut(s) | 1517 |
| GluI | GCNGC | 3 cut(s) | 151, 165, 1442 |
| GsaI | CCCAGC | 1 cut(s) | 178 |
| HaeIII | GGCC | 3 cut(s) | 468, 617, 1358 |
| HapII | CCGG | 1 cut(s) | 1687 |
| HgaI | GACGC | 1 cut(s) | 959 |
| HhaI | GCGC | 1 cut(s) | 1518 |
| Hin6I | GCGC | 1 cut(s) | 1516 |
| HinP1I | GCGC | 1 cut(s) | 1516 |
| HincII | GTYRAC | 2 cut(s) | 679, 766 |
| HindII | GTYRAC | 2 cut(s) | 679, 766 |
| HindIII | AAGCTT | 1 cut(s) | 1392 |
| HinfI | GANTC | 5 cut(s) | 225, 799, 842, 1363, 1643 |
| HpaI | GTTAAC | 1 cut(s) | 679 |
| HpaII | CCGG | 1 cut(s) | 1687 |
| HphI | GGTGA | 3 cut(s) | 698, 952, 1391 |
| Hpy166II | GTNNAC | 6 cut(s) | 209, 444, 679, 766, 1250, 1552 |
| Hpy188III | TCNNGA | 9 cut(s) | 371, 746, 803, 846, 1040, 1163, 1283, 1580, 1626 |
| Hpy8I | GTNNAC | 6 cut(s) | 209, 444, 679, 766, 1250, 1552 |
| HpyAV | CCTTC | 8 cut(s) | 43, 449, 644, 854, 1048, 1174, 1468, 1663 |
| HpyCH4III | ACNGT | 5 cut(s) | 239, 1106, 1172, 1231, 1247 |
| HpyCH4IV | ACGT | 2 cut(s) | 872, 1252 |
| HpyCH4V | TGCA | 8 cut(s) | 199, 313, 566, 647, 1372, 1489, 1616, 1699 |
| HpyF10VI | GCNNNNNNNGC | 6 cut(s) | 134, 170, 785, 1378, 1387, 1515 |
| HpyF3I | CTNAG | 9 cut(s) | 14, 111, 138, 581, 1067, 1137, 1343, 1501, 1602 |
| HpySE526I | ACGT | 2 cut(s) | 872, 1252 |
| HspAI | GCGC | 1 cut(s) | 1516 |
| Ksp22I | TGATCA | 2 cut(s) | 187, 331 |
| KspAI | GTTAAC | 1 cut(s) | 679 |
| Kzo9I | GATC | 5 cut(s) | 143, 187, 279, 331, 1062 |
| LmnI | GCTCC | 3 cut(s) | 43, 291, 417 |
| LweI | GCATC | 6 cut(s) | 124, 151, 385, 916, 1003, 1708 |
| MaeI | CTAG | 1 cut(s) | 746 |
| MaeII | ACGT | 2 cut(s) | 872, 1252 |
| MaeIII | GTNAC | 1 cut(s) | 702 |
| MalI | GATC | 5 cut(s) | 145, 189, 281, 333, 1064 |
| MboI | GATC | 5 cut(s) | 143, 187, 279, 331, 1062 |
| MboII | GAAGA | 8 cut(s) | 85, 116, 148, 285, 372, 671, 1194, 1490 |
| MflI | RGATCY | 1 cut(s) | 143 |
| MhlI | GDGCHC | 2 cut(s) | 422, 1608 |
| MluCI | AATT | 9 cut(s) | 77, 308, 353, 490, 716, 912, 961, 1461, 1708 |
| MlyI | GAGTC | 1 cut(s) | 793 |
| MmeI | TCCRAC | 2 cut(s) | 196, 1247 |
| MroXI | GAANNNNTTC | 1 cut(s) | 1430 |
| MseI | TTAA | 6 cut(s) | 180, 351, 678, 719, 1125, 1711 |
| MslI | CAYNNNNRTG | 5 cut(s) | 429, 807, 1023, 1427, 1611 |
| MspCI | CTTAAG | 1 cut(s) | 179 |
| MspI | CCGG | 1 cut(s) | 1687 |
| MspR9I | CCNGG | 2 cut(s) | 1403, 1688 |
| MvaI | CCWGG | 1 cut(s) | 1403 |
| MwoI | GCNNNNNNNGC | 6 cut(s) | 134, 170, 785, 1378, 1387, 1515 |
| NciI | CCSGG | 1 cut(s) | 1688 |
| NdeII | GATC | 5 cut(s) | 143, 187, 279, 331, 1062 |
| NlaIV | GGNNCC | 2 cut(s) | 339, 1019 |
| NmeAIII | GCCGAG | 1 cut(s) | 475 |
| NspI | RCATGY | 2 cut(s) | 647, 1620 |
| NspV | TTCGAA | 1 cut(s) | 1052 |
| OliI | CACNNNNGTG | 1 cut(s) | 1611 |
| PaeI | GCATGC | 2 cut(s) | 647, 1620 |
| PagI | TCATGA | 3 cut(s) | 802, 1039, 1282 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 926 |
| PdmI | GAANNNNTTC | 1 cut(s) | 1430 |
| PfeI | GAWTC | 4 cut(s) | 225, 842, 1363, 1643 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 965 |
| PkrI | GCNGC | 3 cut(s) | 152, 166, 1443 |
| PleI | GAGTC | 1 cut(s) | 793 |
| PpsI | GAGTC | 1 cut(s) | 793 |
| Ppu21I | YACGTR | 1 cut(s) | 873 |
| PpuMI | RGGWCCY | 2 cut(s) | 338, 709 |
| Psp1406I | AACGTT | 1 cut(s) | 1252 |
| Psp5II | RGGWCCY | 2 cut(s) | 338, 709 |
| Psp6I | CCWGG | 1 cut(s) | 1401 |
| PspFI | CCCAGC | 1 cut(s) | 174 |
| PspGI | CCWGG | 1 cut(s) | 1401 |
| PspN4I | GGNNCC | 2 cut(s) | 339, 1019 |
| PspPI | GGNCC | 2 cut(s) | 338, 709 |
| PspPPI | RGGWCCY | 2 cut(s) | 338, 709 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 866, 898 |
| PstNI | CAGNNNCTG | 1 cut(s) | 845 |
| PsuI | RGATCY | 1 cut(s) | 143 |
| RsaI | GTAC | 2 cut(s) | 255, 1142 |
| RsaNI | GTAC | 2 cut(s) | 254, 1141 |
| RseI | CAYNNNNRTG | 5 cut(s) | 429, 807, 1023, 1427, 1611 |
| SaqAI | TTAA | 6 cut(s) | 180, 351, 678, 719, 1125, 1711 |
| SatI | GCNGC | 3 cut(s) | 151, 165, 1442 |
| Sau3AI | GATC | 5 cut(s) | 143, 187, 279, 331, 1062 |
| Sau96I | GGNCC | 2 cut(s) | 338, 709 |
| SchI | GAGTC | 1 cut(s) | 793 |
| ScrFI | CCNGG | 2 cut(s) | 1403, 1688 |
| SduI | GDGCHC | 2 cut(s) | 422, 1608 |
| SfaNI | GCATC | 6 cut(s) | 124, 151, 385, 916, 1003, 1708 |
| SfcI | CTRYAG | 2 cut(s) | 1230, 1272 |
| SfuI | TTCGAA | 1 cut(s) | 1052 |
| SinI | GGWCC | 2 cut(s) | 338, 709 |
| SmiMI | CAYNNNNRTG | 5 cut(s) | 429, 807, 1023, 1427, 1611 |
| SmlI | CTYRAG | 3 cut(s) | 179, 730, 1469 |
| SmoI | CTYRAG | 3 cut(s) | 179, 730, 1469 |
| SphI | GCATGC | 2 cut(s) | 647, 1620 |
| Sse9I | AATT | 9 cut(s) | 77, 308, 353, 490, 716, 912, 961, 1461, 1708 |
| SsiI | CCGC | 4 cut(s) | 151, 165, 1442, 1620 |
| SspMI | CTAG | 1 cut(s) | 746 |
| StyD4I | CCNGG | 2 cut(s) | 1401, 1686 |
| TaaI | ACNGT | 5 cut(s) | 239, 1106, 1172, 1231, 1247 |
| TaiI | ACGT | 2 cut(s) | 875, 1255 |
| TaqI | TCGA | 3 cut(s) | 159, 1052, 1625 |
| TasI | AATT | 9 cut(s) | 77, 308, 353, 490, 716, 912, 961, 1461, 1708 |
| TauI | GCSGC | 3 cut(s) | 153, 167, 1444 |
| TfiI | GAWTC | 4 cut(s) | 225, 842, 1363, 1643 |
| Tru1I | TTAA | 6 cut(s) | 180, 351, 678, 719, 1125, 1711 |
| Tru9I | TTAA | 6 cut(s) | 180, 351, 678, 719, 1125, 1711 |
| TscAI | CASTG | 3 cut(s) | 451, 1111, 1454 |
| TspDTI | ATGAA | 8 cut(s) | 321, 356, 873, 1041, 1271, 1299, 1439, 1635 |
| TspRI | CASTG | 3 cut(s) | 451, 1111, 1454 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 965 |
| Vha464I | CTTAAG | 1 cut(s) | 179 |
| VpaK11BI | GGWCC | 2 cut(s) | 338, 709 |
| XapI | RAATTY | 2 cut(s) | 490, 961 |
| XbaI | TCTAGA | 1 cut(s) | 745 |
| XceI | RCATGY | 2 cut(s) | 647, 1620 |
| XmiI | GTMKAC | 1 cut(s) | 208 |
| XmnI | GAANNNNTTC | 1 cut(s) | 1430 |
| XspI | CTAG | 1 cut(s) | 746 |