Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0017496.1

Orthogroup ID

OG0011431

Physical Location & Seq

Genomic Coordinates Reverse (-)

5696 .. 7927

Gene Structure 2232 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0017496.1_g000003.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1710 bp

atggattacgagctgaggagagcgagagagaagctgaacaaggagcagaacgagaggaaagagatggccaggaagagattggagagggagagaaaggccaaagaagaagccaggaagcaaagagaagcccttgacgctgagagatccagacgcatcttcgatgccgaacaagcccagattaaggttgatcaagaagtgcaggaaagtttacttgtgggacgaggaattgtgttttatcgtgtgttggaagcggtagcttgtcagggtagtggagataagatcaagctgccatcgtcatgcttcaatgaattgtcagaaggaggtgcttttgataagggaccattgtattttaagctatcggtagttcatcaggagggttcttcggacatggttgatgaaaaggaaaagtgtcggagcacacattcaggtgttttggagttcacagctgatgaaggttttgttgggcttcctcctcatgtatggcagaatttatttccagggaatacaccagcgatccctttgatagaagttcgctatgtctggctgcctaaaggaacttacgccaaactccaacctcttagggtaggcttctcagacttgcctaaccacaaggccatcctcgaaacaagccttcgccagcatgccaccctttctgaagatgatatatttatagtcaactatggggacctggtatataagttgcaggttcttgaattaaaaccctcttcaagtgtatctgttctagaaacagatattgaagtcgacatagttggtcctgatgccgctgtggagaacactcatgataatgtcctaaaaccacttacatttggaaaatcggaatttggaatggtcgatgaagggcactacacatattacaagttctcaatagataatactacttgggagaacattgcttctggggatgccaaagttgaggtcaggatagaaccagagacaaattctggggatagtgatatctacatatctaagcatcctctcatattccctaccaggcaccagcatgaatggtcatcccatgacattggttcgaagactttgatccttagttcaaaagataagagcttggaggcaggaacttacactcttggtgtttatggctttaagggaaaaactaagtaccatgtatctgtgaatgttgaagatgttaggaatcagaaggtaggccagaaggttgcgtcttcctcatcgtcaatggatgtggatactgtagagtgtaagaattgtaagcgttatatacccagtcggagtattgcacttcatgaagcatattgtagcagaaacaatgttgtttgtcggcatactggttgtggagttgttcttagggttgaggaggccaagaatcatgtgcattgtcaaaaatgtggacagccttttcatcaggaagagatggagaagcacatgaaagtgttccatgagccgcttcactgcccctgtggtattgtgcttgagaaggaagagatggtgcaacatcaagcctcagtttgccccctgcgccttgttccatgtcgattctgtggggacatggttcaagccggaagttctgctattgatgttcgggacaagttaagaggattgtctgagcatgagagtgtctgtgggtcgaggactgccccgtgtgattcatgtgggcgttccgtgatgttgaaggacatggacatccaccgcgttgccgtccatcaaaagaactaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0019538 GO:0019941 GO:0030163 GO:0043170 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0051603 GO:0071704 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

UFD1

Protein Analysis

569

Amino Acids

64.15

Weight (kDa)

6.33

Isoelectric Point (pI)

39.06

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011431)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G15420 AT4G15420
fragaria_vesca	FvH4_6g42660
malus_domestica	MD09G1071000.v1.1 MD17G1101600.v1.1
prunus_persica	Prupe.3G213300_v2.0.a1
pyrus_communis	pycom09g03500 pycom17g09600
rosa_chinensis	RchiOBHm_Chr2g0158561
rosa_laevigata	RLG00000021095
rosa_multiflora	Rmu_sc0017496.1_g000003 Rmu_sc0040507.1_g000001 Rmu_sc0040508.1_g000001
rosa_roxburghii	Rroxscaffold_2G00091220
rosa_rugosa	Rorug02G0469900
rosa_samantha	Rh2AG536100 Rh2BG549200 Rh2CG519700 Rh2DG558900
rosa_wichuraiana	Rw2G044380

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	694
AccB1I	GGYRCC	1 cut(s)	1014
AccI	GTMKAC	1 cut(s)	762
AccII	CGCG	1 cut(s)	1686
AciI	CCGC	4 cut(s)	251, 783, 1439, 1684
AclWI	GGATC	3 cut(s)	138, 508, 1054
AcoI	YGGCCR	1 cut(s)	66
AcsI	RAATTY	3 cut(s)	487, 839, 958
AcuI	CTGAAG	1 cut(s)	675
AfaI	GTAC	1 cut(s)	1139
AfiI	CCNNNNNNNGG	1 cut(s)	181
AgsI	TTSAA	8 cut(s)	304, 713, 729, 758, 1071, 1160, 1550, 1666
AjnI	CCWGG	5 cut(s)	68, 110, 496, 687, 1010
AjuI	GAANNNNNNNTTGG	2 cut(s)	444, 476
AluBI	AGCT	7 cut(s)	13, 34, 257, 286, 355, 446, 1083
AluI	AGCT	7 cut(s)	13, 34, 257, 286, 355, 446, 1083
Alw21I	GWGCWC	1 cut(s)	419
Alw26I	GTCTC	1 cut(s)	947
AlwI	GGATC	3 cut(s)	138, 508, 1054
AoxI	GGCC	5 cut(s)	66, 96, 612, 1183, 1353
ApeKI	GCWGC	2 cut(s)	286, 544
ApoI	RAATTY	3 cut(s)	487, 839, 958
ArsI	GACNNNNNNTTYG	2 cut(s)	921, 953
Asp700I	GAANNNNTTC	1 cut(s)	1427
AspLEI	GCGC	1 cut(s)	1515
AspS9I	GGNCC	3 cut(s)	338, 685, 773
AsuII	TTCGAA	1 cut(s)	1049
AvaII	GGWCC	3 cut(s)	338, 685, 773
BaeGI	GKGCMC	1 cut(s)	864
BalI	TGGCCA	1 cut(s)	68
BanI	GGYRCC	1 cut(s)	1014
BbsI	GAAGAC	2 cut(s)	1058, 1191
Bbv12I	GWGCWC	1 cut(s)	419
BbvCI	CCTCAGC	1 cut(s)	14
BbvI	GCAGC	2 cut(s)	273, 531
BccI	CCATC	6 cut(s)	58, 298, 623, 1402, 1474, 1704
BceAI	ACGGC	1 cut(s)	1676
BciT130I	CCWGG	5 cut(s)	70, 112, 498, 689, 1012
BciVI	GTATCC	1 cut(s)	1216
BclI	TGATCA	1 cut(s)	187
BcoDI	GTCTC	1 cut(s)	947
BfaI	CTAG	1 cut(s)	743
BfmI	CTRYAG	1 cut(s)	1227
BfuAI	ACCTGC	1 cut(s)	694
BfuI	GTATCC	1 cut(s)	1216
BisI	GCNGC	4 cut(s)	287, 545, 783, 1439
BlsI	GCNGC	4 cut(s)	288, 546, 784, 1440
Bme1390I	CCNGG	5 cut(s)	70, 112, 498, 689, 1012
Bme18I	GGWCC	3 cut(s)	338, 685, 773
BmgT120I	GGNCC	3 cut(s)	338, 685, 773
BmiI	GGNNCC	3 cut(s)	339, 686, 1016
BmrFI	CCNGG	5 cut(s)	70, 112, 498, 689, 1012
BmrI	ACTGGG	1 cut(s)	1254
BmsI	GCATC	5 cut(s)	151, 162, 769, 913, 1000
BmuI	ACTGGG	1 cut(s)	1254
BpiI	GAAGAC	2 cut(s)	1058, 1191
Bpu10I	CCTNAGC	1 cut(s)	14
Bpu14I	TTCGAA	1 cut(s)	1049
BpuEI	CTTGAG	1 cut(s)	1487
BsaJI	CCNNGG	1 cut(s)	497
Bsc4I	CCNNNNNNNGG	1 cut(s)	181
Bse1I	ACTGG	2 cut(s)	1260, 1327
Bse3DI	GCAATG	1 cut(s)	909
BseBI	CCWGG	5 cut(s)	70, 112, 498, 689, 1012
BseDI	CCNNGG	1 cut(s)	497
BseGI	GGATG	6 cut(s)	615, 928, 991, 1031, 1222, 1677
BseLI	CCNNNNNNNGG	1 cut(s)	181
BseMI	GCAATG	1 cut(s)	909
BseMII	CTCAG	5 cut(s)	5, 129, 606, 1512, 1590
BseNI	ACTGG	2 cut(s)	1260, 1327
BseRI	GAGGAG	3 cut(s)	31, 462, 1364
BseSI	GKGCMC	1 cut(s)	864
BseXI	GCAGC	2 cut(s)	273, 531
BsgI	GTGCAG	1 cut(s)	218
Bsh1236I	CGCG	1 cut(s)	1686
BshFI	GGCC	5 cut(s)	68, 98, 614, 1185, 1355
BshNI	GGYRCC	1 cut(s)	1014
BsiHKAI	GWGCWC	1 cut(s)	419
BsiSI	CCGG	1 cut(s)	1554
BslFI	GGGAC	5 cut(s)	231, 351, 698, 1553, 1592
BslI	CCNNNNNNNGG	1 cut(s)	181
BsmAI	GTCTC	1 cut(s)	947
BsmFI	GGGAC	5 cut(s)	231, 351, 698, 1553, 1592
BsnI	GGCC	5 cut(s)	68, 98, 614, 1185, 1355
Bsp119I	TTCGAA	1 cut(s)	1049
Bsp1286I	GDGCHC	2 cut(s)	419, 864
Bsp143I	GATC	5 cut(s)	143, 187, 279, 513, 1059
BspACI	CCGC	4 cut(s)	251, 783, 1439, 1684
BspANI	GGCC	5 cut(s)	68, 98, 614, 1185, 1355
BspCNI	CTCAG	5 cut(s)	6, 130, 605, 1511, 1591
BspFNI	CGCG	1 cut(s)	1686
BspHI	TCATGA	2 cut(s)	799, 1279
BspLI	GGNNCC	3 cut(s)	339, 686, 1016
BspMI	ACCTGC	1 cut(s)	694
BspPI	GGATC	3 cut(s)	138, 508, 1054
BspT104I	TTCGAA	1 cut(s)	1049
BspT107I	GGYRCC	1 cut(s)	1014
BsrDI	GCAATG	1 cut(s)	909
BsrI	ACTGG	2 cut(s)	1260, 1327
BssECI	CCNNGG	1 cut(s)	497
BssMI	GATC	5 cut(s)	143, 187, 279, 513, 1059
Bst2UI	CCWGG	5 cut(s)	70, 112, 498, 689, 1012
Bst4CI	ACNGT	1 cut(s)	1228
Bst6I	CTCTTC	4 cut(s)	68, 730, 1398, 1470
BstBI	TTCGAA	1 cut(s)	1049
BstC8I	GCNNGC	2 cut(s)	638, 642
BstF5I	GGATG	6 cut(s)	615, 928, 991, 1031, 1222, 1677
BstFNI	CGCG	1 cut(s)	1686
BstHHI	GCGC	1 cut(s)	1515
BstKTI	GATC	5 cut(s)	146, 190, 282, 516, 1062
BstMAI	GTCTC	1 cut(s)	947
BstMBI	GATC	5 cut(s)	143, 187, 279, 513, 1059
BstMWI	GCNNNNNNNGC	3 cut(s)	134, 170, 1512
BstNI	CCWGG	5 cut(s)	70, 112, 498, 689, 1012
BstNSI	RCATGY	1 cut(s)	644
BstSCI	CCNGG	5 cut(s)	68, 110, 496, 687, 1010
BstSFI	CTRYAG	1 cut(s)	1227
BstSLI	GKGCMC	1 cut(s)	864
BstUI	CGCG	1 cut(s)	1686
BstV1I	GCAGC	2 cut(s)	273, 531
BstV2I	GAAGAC	2 cut(s)	1058, 1191
BstX2I	RGATCY	1 cut(s)	143
BstXI	CCANNNNNNTGG	1 cut(s)	1043
BstYI	RGATCY	1 cut(s)	143
BsuI	GTATCC	1 cut(s)	1216
BsuRI	GGCC	5 cut(s)	68, 98, 614, 1185, 1355
BtsCI	GGATG	6 cut(s)	615, 928, 991, 1031, 1222, 1677
BtsI	GCAGTG	1 cut(s)	1444
BtsIMutI	CAGTG	1 cut(s)	1444
BveI	ACCTGC	1 cut(s)	694
Cac8I	GCNNGC	2 cut(s)	638, 642
CciI	TCATGA	2 cut(s)	799, 1279
CfoI	GCGC	1 cut(s)	1515
Cfr13I	GGNCC	3 cut(s)	338, 685, 773
CseI	GACGC	3 cut(s)	143, 159, 1185
CsiI	ACCWGGT	1 cut(s)	687
Csp6I	GTAC	1 cut(s)	1138
CspCI	CAANNNNNGTGG	2 cut(s)	1200, 1235
CviQI	GTAC	1 cut(s)	1138
DpnI	GATC	5 cut(s)	145, 189, 281, 515, 1061
DpnII	GATC	5 cut(s)	143, 187, 279, 513, 1059
EaeI	YGGCCR	1 cut(s)	66
Eam1104I	CTCTTC	4 cut(s)	68, 730, 1398, 1470
EarI	CTCTTC	4 cut(s)	68, 730, 1398, 1470
Eco32I	GATATC	1 cut(s)	976
Eco47I	GGWCC	3 cut(s)	338, 685, 773
Eco57I	CTGAAG	1 cut(s)	675
EcoO109I	RGGNCCY	1 cut(s)	685
EcoRII	CCWGG	5 cut(s)	68, 110, 496, 687, 1010
EcoRV	GATATC	1 cut(s)	976
FaqI	GGGAC	5 cut(s)	231, 351, 698, 1553, 1592
FbaI	TGATCA	1 cut(s)	187
FblI	GTMKAC	1 cut(s)	762
Fnu4HI	GCNGC	4 cut(s)	287, 545, 783, 1439
FokI	GGATG	6 cut(s)	602, 935, 978, 1018, 1229, 1664
Fsp4HI	GCNGC	4 cut(s)	287, 545, 783, 1439
FspBI	CTAG	1 cut(s)	743
GlaI	GCGC	1 cut(s)	1514
GluI	GCNGC	4 cut(s)	287, 545, 783, 1439
HaeIII	GGCC	5 cut(s)	68, 98, 614, 1185, 1355
HapII	CCGG	1 cut(s)	1554
HgaI	GACGC	3 cut(s)	143, 159, 1185
HhaI	GCGC	1 cut(s)	1515
Hin6I	GCGC	1 cut(s)	1513
HinP1I	GCGC	1 cut(s)	1513
HincII	GTYRAC	2 cut(s)	676, 763
HindII	GTYRAC	2 cut(s)	676, 763
HinfI	GANTC	4 cut(s)	1171, 1360, 1530, 1640
HpaII	CCGG	1 cut(s)	1554
Hpy166II	GTNNAC	5 cut(s)	209, 441, 676, 763, 1385
Hpy188I	TCNGA	9 cut(s)	316, 385, 414, 595, 655, 838, 1176, 1266, 1600
Hpy8I	GTNNAC	5 cut(s)	209, 441, 676, 763, 1385
HpyAV	CCTTC	8 cut(s)	311, 446, 641, 851, 1171, 1183, 1465, 1660
HpyCH4III	ACNGT	1 cut(s)	1228
HpyCH4V	TGCA	5 cut(s)	199, 703, 1274, 1369, 1486
HpyF10VI	GCNNNNNNNGC	3 cut(s)	134, 170, 1512
HspAI	GCGC	1 cut(s)	1513
Ksp22I	TGATCA	1 cut(s)	187
Kzo9I	GATC	5 cut(s)	143, 187, 279, 513, 1059
LmnI	GCTCC	2 cut(s)	43, 414
Lsp1109I	GCAGC	2 cut(s)	273, 531
LweI	GCATC	5 cut(s)	151, 162, 769, 913, 1000
MabI	ACCWGGT	1 cut(s)	687
MaeI	CTAG	1 cut(s)	743
MalI	GATC	5 cut(s)	145, 189, 281, 515, 1061
MboI	GATC	5 cut(s)	143, 187, 279, 513, 1059
MflI	RGATCY	1 cut(s)	143
MhlI	GDGCHC	2 cut(s)	419, 864
MlsI	TGGCCA	1 cut(s)	68
MluCI	AATT	7 cut(s)	225, 308, 487, 713, 839, 958, 1240
MluNI	TGGCCA	1 cut(s)	68
MmeI	TCCRAC	4 cut(s)	225, 392, 595, 1244
Mox20I	TGGCCA	1 cut(s)	68
MroXI	GAANNNNTTC	1 cut(s)	1427
MscI	TGGCCA	1 cut(s)	68
MseI	TTAA	5 cut(s)	180, 351, 716, 1122, 1586
MslI	CAYNNNNRTG	6 cut(s)	295, 426, 804, 1020, 1424, 1608
Msp20I	TGGCCA	1 cut(s)	68
MspA1I	CMGCKG	2 cut(s)	446, 785
MspI	CCGG	1 cut(s)	1554
MspR9I	CCNGG	5 cut(s)	70, 112, 498, 689, 1012
MvaI	CCWGG	5 cut(s)	70, 112, 498, 689, 1012
MvnI	CGCG	1 cut(s)	1686
MwoI	GCNNNNNNNGC	3 cut(s)	134, 170, 1512
NdeII	GATC	5 cut(s)	143, 187, 279, 513, 1059
NlaIV	GGNNCC	3 cut(s)	339, 686, 1016
NspI	RCATGY	1 cut(s)	644
NspV	TTCGAA	1 cut(s)	1049
PaeI	GCATGC	1 cut(s)	644
PagI	TCATGA	2 cut(s)	799, 1279
PdmI	GAANNNNTTC	1 cut(s)	1427
PfeI	GAWTC	4 cut(s)	1171, 1360, 1530, 1640
PkrI	GCNGC	4 cut(s)	288, 546, 784, 1440
PpuMI	RGGWCCY	1 cut(s)	685
Psp5II	RGGWCCY	1 cut(s)	685
Psp6I	CCWGG	5 cut(s)	68, 110, 496, 687, 1010
PspGI	CCWGG	5 cut(s)	68, 110, 496, 687, 1010
PspN4I	GGNNCC	3 cut(s)	339, 686, 1016
PspPI	GGNCC	3 cut(s)	338, 685, 773
PspPPI	RGGWCCY	1 cut(s)	685
PsuI	RGATCY	1 cut(s)	143
PvuII	CAGCTG	1 cut(s)	446
RsaI	GTAC	1 cut(s)	1139
RsaNI	GTAC	1 cut(s)	1138
RseI	CAYNNNNRTG	6 cut(s)	295, 426, 804, 1020, 1424, 1608
SalI	GTCGAC	1 cut(s)	761
SaqAI	TTAA	5 cut(s)	180, 351, 716, 1122, 1586
SatI	GCNGC	4 cut(s)	287, 545, 783, 1439
Sau3AI	GATC	5 cut(s)	143, 187, 279, 513, 1059
Sau96I	GGNCC	3 cut(s)	338, 685, 773
ScrFI	CCNGG	5 cut(s)	70, 112, 498, 689, 1012
SduI	GDGCHC	2 cut(s)	419, 864
SexAI	ACCWGGT	1 cut(s)	687
SfaNI	GCATC	5 cut(s)	151, 162, 769, 913, 1000
SfcI	CTRYAG	1 cut(s)	1227
SfuI	TTCGAA	1 cut(s)	1049
SinI	GGWCC	3 cut(s)	338, 685, 773
SmiMI	CAYNNNNRTG	6 cut(s)	295, 426, 804, 1020, 1424, 1608
SmlI	CTYRAG	1 cut(s)	1466
SmoI	CTYRAG	1 cut(s)	1466
SphI	GCATGC	1 cut(s)	644
Sse9I	AATT	7 cut(s)	225, 308, 487, 713, 839, 958, 1240
SsiI	CCGC	4 cut(s)	251, 783, 1439, 1684
SspMI	CTAG	1 cut(s)	743
StyD4I	CCNGG	5 cut(s)	68, 110, 496, 687, 1010
TaaI	ACNGT	1 cut(s)	1228
TaqI	TCGA	7 cut(s)	159, 621, 762, 852, 1049, 1528, 1622
TasI	AATT	7 cut(s)	225, 308, 487, 713, 839, 958, 1240
TauI	GCSGC	2 cut(s)	785, 1441
TfiI	GAWTC	4 cut(s)	1171, 1360, 1530, 1640
Tru1I	TTAA	5 cut(s)	180, 351, 716, 1122, 1586
Tru9I	TTAA	5 cut(s)	180, 351, 716, 1122, 1586
TscAI	CASTG	1 cut(s)	1451
TseI	GCWGC	2 cut(s)	286, 544
TspGWI	ACGGA	1 cut(s)	1645
TspRI	CASTG	1 cut(s)	1451
VpaK11BI	GGWCC	3 cut(s)	338, 685, 773
XapI	RAATTY	3 cut(s)	487, 839, 958
XbaI	TCTAGA	1 cut(s)	742
XceI	RCATGY	1 cut(s)	644
XcmI	CCANNNNNNNNNTGG	1 cut(s)	76
XmiI	GTMKAC	1 cut(s)	762
XmnI	GAANNNNTTC	1 cut(s)	1427
XspI	CTAG	1 cut(s)	743

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.