Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0040507.1

Orthogroup ID

OG0011431

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 1678

Gene Structure 1678 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0040507.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1487 bp

gaattgtgttttatcgtgtgttggaagcggtagcttgtcagggtagtggagataagatcaagctgccatcgtcatgcttcaatgaattgtcagaaggaggtgcttttgataagggaccattgtattttaagctatcggtagttcatcaggagggttcttcggacatggttgatgaaaaggaaaagtgtcggagcacacattcaggtgttttggagttcacagctgatgaaggttttgttgggcttcctcctcatgtatggcagaatttatttccagggaatacaccagcgatccctttgatagaagttcgctatgtctggctgcctaaaggaacttacgccaaactccaacctcttagggtaggcttctcagacttgcctaaccacaaggccatcctcgaaacaagccttcgccagcatgccaccctttctgaagatgatatatttatagtcaactatggggacctggtatataagttgcaggttcttgaattaaaaccctcttcaagtgtatctgttctagaaacagatattgaagtcgacatagttggtcctgatgccgctgtggagaacactcatgataatgtcctaaaaccacttacatttggaaaatcggaatttggaatggtcgatgaagggcactacacatattacaagttctcaatagataatactacttgggagaacattgcttctggggatgccaaagttgaggtcaggatagaaccagagacaaattctggggatagtgatatctacatatctaagcatcctctcatattccctaccaggcaccagcatgaatggtcatcccatgacattggttcgaagactttgatccttagttcaaaagataagagcttggaggcaggaacttacactcttggtgtttatggctttaagggaaaaactaagtaccatgtatctgtgaatgttgaagatgttaggaatcagaaggtaggccagaaggttgcgtcttcctcatcgtcaatggatgtggatactgtagagtgtaagaattgtaagcgttatatacccagtcggagtattgcacttcatgaagcatattgtagcagaaacaatgttgtttgtcggcatactggttgtggagttgttcttagggttgaggaggccaagaatcatgtgcattgtcaaaaatgtggacagccttttcatcaggaagagatggagaagcacatgaaagtgttccatgagccgcttcactgcccctgtggtattgtgcttgagaaggaagagatggtgcaacatcaagcctcagtttgccccctgcgccttgttccatgtcgattctgtggggacatggttcaagccggaagttctgctattgatgttcgggacaagttaagaggattgtctgagcatgagagtgtctgtgggtcgaggactgccccgtgtgattcatgtgggcgttccgtgatgttgaaggacatggacatccaccgcgttgccgtccatcaaaagaactaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0019538 GO:0019941 GO:0030163 GO:0043170 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0051603 GO:0071704 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

UFD1

Protein Analysis

494

Amino Acids

55.04

Weight (kDa)

6.06

Isoelectric Point (pI)

36.24

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011431)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G15420 AT4G15420
fragaria_vesca	FvH4_6g42660
malus_domestica	MD09G1071000.v1.1 MD17G1101600.v1.1
prunus_persica	Prupe.3G213300_v2.0.a1
pyrus_communis	pycom09g03500 pycom17g09600
rosa_chinensis	RchiOBHm_Chr2g0158561
rosa_laevigata	RLG00000021095
rosa_multiflora	Rmu_sc0017496.1_g000003 Rmu_sc0040507.1_g000001 Rmu_sc0040508.1_g000001
rosa_roxburghii	Rroxscaffold_2G00091220
rosa_rugosa	Rorug02G0469900
rosa_samantha	Rh2AG536100 Rh2BG549200 Rh2CG519700 Rh2DG558900
rosa_wichuraiana	Rw2G044380

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	471
AccB1I	GGYRCC	1 cut(s)	791
AccI	GTMKAC	1 cut(s)	539
AccII	CGCG	1 cut(s)	1463
AciI	CCGC	4 cut(s)	28, 560, 1216, 1461
AclWI	GGATC	2 cut(s)	285, 831
AcsI	RAATTY	3 cut(s)	264, 616, 735
AcuI	CTGAAG	1 cut(s)	452
AfaI	GTAC	1 cut(s)	916
AgsI	TTSAA	8 cut(s)	81, 490, 506, 535, 848, 937, 1327, 1443
AjnI	CCWGG	3 cut(s)	273, 464, 787
AjuI	GAANNNNNNNTTGG	2 cut(s)	221, 253
AluBI	AGCT	5 cut(s)	34, 63, 132, 223, 860
AluI	AGCT	5 cut(s)	34, 63, 132, 223, 860
Alw21I	GWGCWC	1 cut(s)	196
Alw26I	GTCTC	1 cut(s)	724
AlwI	GGATC	2 cut(s)	285, 831
AoxI	GGCC	3 cut(s)	389, 960, 1130
ApeKI	GCWGC	2 cut(s)	63, 321
ApoI	RAATTY	3 cut(s)	264, 616, 735
ArsI	GACNNNNNNTTYG	2 cut(s)	698, 730
Asp700I	GAANNNNTTC	1 cut(s)	1204
AspLEI	GCGC	1 cut(s)	1292
AspS9I	GGNCC	3 cut(s)	115, 462, 550
AsuII	TTCGAA	1 cut(s)	826
AvaII	GGWCC	3 cut(s)	115, 462, 550
BaeGI	GKGCMC	1 cut(s)	641
BanI	GGYRCC	1 cut(s)	791
BbsI	GAAGAC	2 cut(s)	835, 968
Bbv12I	GWGCWC	1 cut(s)	196
BbvI	GCAGC	2 cut(s)	50, 308
BccI	CCATC	5 cut(s)	75, 400, 1179, 1251, 1481
BceAI	ACGGC	1 cut(s)	1453
BciT130I	CCWGG	3 cut(s)	275, 466, 789
BciVI	GTATCC	1 cut(s)	993
BcoDI	GTCTC	1 cut(s)	724
BfaI	CTAG	1 cut(s)	520
BfmI	CTRYAG	1 cut(s)	1004
BfuAI	ACCTGC	1 cut(s)	471
BfuI	GTATCC	1 cut(s)	993
BisI	GCNGC	4 cut(s)	64, 322, 560, 1216
BlsI	GCNGC	4 cut(s)	65, 323, 561, 1217
Bme1390I	CCNGG	3 cut(s)	275, 466, 789
Bme18I	GGWCC	3 cut(s)	115, 462, 550
BmgT120I	GGNCC	3 cut(s)	115, 462, 550
BmiI	GGNNCC	3 cut(s)	116, 463, 793
BmrFI	CCNGG	3 cut(s)	275, 466, 789
BmrI	ACTGGG	1 cut(s)	1031
BmsI	GCATC	3 cut(s)	546, 690, 777
BmuI	ACTGGG	1 cut(s)	1031
BpiI	GAAGAC	2 cut(s)	835, 968
Bpu14I	TTCGAA	1 cut(s)	826
BpuEI	CTTGAG	1 cut(s)	1264
BsaJI	CCNNGG	1 cut(s)	274
Bse1I	ACTGG	2 cut(s)	1037, 1104
Bse3DI	GCAATG	1 cut(s)	686
BseBI	CCWGG	3 cut(s)	275, 466, 789
BseDI	CCNNGG	1 cut(s)	274
BseGI	GGATG	6 cut(s)	392, 705, 768, 808, 999, 1454
BseMI	GCAATG	1 cut(s)	686
BseMII	CTCAG	3 cut(s)	383, 1289, 1367
BseNI	ACTGG	2 cut(s)	1037, 1104
BseRI	GAGGAG	2 cut(s)	239, 1141
BseSI	GKGCMC	1 cut(s)	641
BseXI	GCAGC	2 cut(s)	50, 308
Bsh1236I	CGCG	1 cut(s)	1463
BshFI	GGCC	3 cut(s)	391, 962, 1132
BshNI	GGYRCC	1 cut(s)	791
BsiHKAI	GWGCWC	1 cut(s)	196
BsiSI	CCGG	1 cut(s)	1331
BslFI	GGGAC	4 cut(s)	128, 475, 1330, 1369
BsmAI	GTCTC	1 cut(s)	724
BsmFI	GGGAC	4 cut(s)	128, 475, 1330, 1369
BsnI	GGCC	3 cut(s)	391, 962, 1132
Bsp119I	TTCGAA	1 cut(s)	826
Bsp1286I	GDGCHC	2 cut(s)	196, 641
Bsp143I	GATC	3 cut(s)	56, 290, 836
BspACI	CCGC	4 cut(s)	28, 560, 1216, 1461
BspANI	GGCC	3 cut(s)	391, 962, 1132
BspCNI	CTCAG	3 cut(s)	382, 1288, 1368
BspFNI	CGCG	1 cut(s)	1463
BspHI	TCATGA	2 cut(s)	576, 1056
BspLI	GGNNCC	3 cut(s)	116, 463, 793
BspMI	ACCTGC	1 cut(s)	471
BspPI	GGATC	2 cut(s)	285, 831
BspT104I	TTCGAA	1 cut(s)	826
BspT107I	GGYRCC	1 cut(s)	791
BsrDI	GCAATG	1 cut(s)	686
BsrI	ACTGG	2 cut(s)	1037, 1104
BssECI	CCNNGG	1 cut(s)	274
BssMI	GATC	3 cut(s)	56, 290, 836
Bst2UI	CCWGG	3 cut(s)	275, 466, 789
Bst4CI	ACNGT	1 cut(s)	1005
Bst6I	CTCTTC	3 cut(s)	507, 1175, 1247
BstBI	TTCGAA	1 cut(s)	826
BstC8I	GCNNGC	2 cut(s)	415, 419
BstDEI	CTNAG	8 cut(s)	355, 369, 764, 841, 911, 1117, 1275, 1376
BstF5I	GGATG	6 cut(s)	392, 705, 768, 808, 999, 1454
BstFNI	CGCG	1 cut(s)	1463
BstHHI	GCGC	1 cut(s)	1292
BstKTI	GATC	3 cut(s)	59, 293, 839
BstMAI	GTCTC	1 cut(s)	724
BstMBI	GATC	3 cut(s)	56, 290, 836
BstMWI	GCNNNNNNNGC	1 cut(s)	1289
BstNI	CCWGG	3 cut(s)	275, 466, 789
BstNSI	RCATGY	1 cut(s)	421
BstSCI	CCNGG	3 cut(s)	273, 464, 787
BstSFI	CTRYAG	1 cut(s)	1004
BstSLI	GKGCMC	1 cut(s)	641
BstUI	CGCG	1 cut(s)	1463
BstV1I	GCAGC	2 cut(s)	50, 308
BstV2I	GAAGAC	2 cut(s)	835, 968
BstXI	CCANNNNNNTGG	1 cut(s)	820
BsuI	GTATCC	1 cut(s)	993
BsuRI	GGCC	3 cut(s)	391, 962, 1132
BtsCI	GGATG	6 cut(s)	392, 705, 768, 808, 999, 1454
BtsI	GCAGTG	1 cut(s)	1221
BtsIMutI	CAGTG	1 cut(s)	1221
BveI	ACCTGC	1 cut(s)	471
Cac8I	GCNNGC	2 cut(s)	415, 419
CciI	TCATGA	2 cut(s)	576, 1056
CfoI	GCGC	1 cut(s)	1292
Cfr13I	GGNCC	3 cut(s)	115, 462, 550
CseI	GACGC	1 cut(s)	962
CsiI	ACCWGGT	1 cut(s)	464
Csp6I	GTAC	1 cut(s)	915
CspCI	CAANNNNNGTGG	2 cut(s)	977, 1012
CviQI	GTAC	1 cut(s)	915
DdeI	CTNAG	8 cut(s)	355, 369, 764, 841, 911, 1117, 1275, 1376
DpnI	GATC	3 cut(s)	58, 292, 838
DpnII	GATC	3 cut(s)	56, 290, 836
Eam1104I	CTCTTC	3 cut(s)	507, 1175, 1247
EarI	CTCTTC	3 cut(s)	507, 1175, 1247
Eco32I	GATATC	1 cut(s)	753
Eco47I	GGWCC	3 cut(s)	115, 462, 550
Eco57I	CTGAAG	1 cut(s)	452
EcoO109I	RGGNCCY	1 cut(s)	462
EcoRII	CCWGG	3 cut(s)	273, 464, 787
EcoRV	GATATC	1 cut(s)	753
FaqI	GGGAC	4 cut(s)	128, 475, 1330, 1369
FblI	GTMKAC	1 cut(s)	539
Fnu4HI	GCNGC	4 cut(s)	64, 322, 560, 1216
FokI	GGATG	6 cut(s)	379, 712, 755, 795, 1006, 1441
Fsp4HI	GCNGC	4 cut(s)	64, 322, 560, 1216
FspBI	CTAG	1 cut(s)	520
GlaI	GCGC	1 cut(s)	1291
GluI	GCNGC	4 cut(s)	64, 322, 560, 1216
HaeIII	GGCC	3 cut(s)	391, 962, 1132
HapII	CCGG	1 cut(s)	1331
HgaI	GACGC	1 cut(s)	962
HhaI	GCGC	1 cut(s)	1292
Hin6I	GCGC	1 cut(s)	1290
HinP1I	GCGC	1 cut(s)	1290
HincII	GTYRAC	2 cut(s)	453, 540
HindII	GTYRAC	2 cut(s)	453, 540
HinfI	GANTC	4 cut(s)	948, 1137, 1307, 1417
HpaII	CCGG	1 cut(s)	1331
Hpy166II	GTNNAC	4 cut(s)	218, 453, 540, 1162
Hpy188I	TCNGA	9 cut(s)	93, 162, 191, 372, 432, 615, 953, 1043, 1377
Hpy188III	TCNNGA	9 cut(s)	148, 487, 520, 553, 577, 717, 1057, 1177, 1354
Hpy8I	GTNNAC	4 cut(s)	218, 453, 540, 1162
HpyAV	CCTTC	8 cut(s)	88, 223, 418, 628, 948, 960, 1242, 1437
HpyCH4III	ACNGT	1 cut(s)	1005
HpyCH4V	TGCA	4 cut(s)	480, 1051, 1146, 1263
HpyF10VI	GCNNNNNNNGC	1 cut(s)	1289
HpyF3I	CTNAG	8 cut(s)	355, 369, 764, 841, 911, 1117, 1275, 1376
HspAI	GCGC	1 cut(s)	1290
Kzo9I	GATC	3 cut(s)	56, 290, 836
LmnI	GCTCC	1 cut(s)	191
Lsp1109I	GCAGC	2 cut(s)	50, 308
LweI	GCATC	3 cut(s)	546, 690, 777
MabI	ACCWGGT	1 cut(s)	464
MaeI	CTAG	1 cut(s)	520
MalI	GATC	3 cut(s)	58, 292, 838
MboI	GATC	3 cut(s)	56, 290, 836
MboII	GAAGA	8 cut(s)	149, 445, 494, 840, 949, 968, 1192, 1264
MhlI	GDGCHC	2 cut(s)	196, 641
MluCI	AATT	7 cut(s)	2, 85, 264, 490, 616, 735, 1017
MmeI	TCCRAC	3 cut(s)	169, 372, 1021
MroXI	GAANNNNTTC	1 cut(s)	1204
MseI	TTAA	4 cut(s)	128, 493, 899, 1363
MslI	CAYNNNNRTG	6 cut(s)	72, 203, 581, 797, 1201, 1385
MspA1I	CMGCKG	2 cut(s)	223, 562
MspI	CCGG	1 cut(s)	1331
MspR9I	CCNGG	3 cut(s)	275, 466, 789
MvaI	CCWGG	3 cut(s)	275, 466, 789
MvnI	CGCG	1 cut(s)	1463
MwoI	GCNNNNNNNGC	1 cut(s)	1289
NdeII	GATC	3 cut(s)	56, 290, 836
NlaIV	GGNNCC	3 cut(s)	116, 463, 793
NspI	RCATGY	1 cut(s)	421
NspV	TTCGAA	1 cut(s)	826
PaeI	GCATGC	1 cut(s)	421
PagI	TCATGA	2 cut(s)	576, 1056
PdmI	GAANNNNTTC	1 cut(s)	1204
PfeI	GAWTC	4 cut(s)	948, 1137, 1307, 1417
PkrI	GCNGC	4 cut(s)	65, 323, 561, 1217
PpuMI	RGGWCCY	1 cut(s)	462
Psp5II	RGGWCCY	1 cut(s)	462
Psp6I	CCWGG	3 cut(s)	273, 464, 787
PspGI	CCWGG	3 cut(s)	273, 464, 787
PspN4I	GGNNCC	3 cut(s)	116, 463, 793
PspPI	GGNCC	3 cut(s)	115, 462, 550
PspPPI	RGGWCCY	1 cut(s)	462
PvuII	CAGCTG	1 cut(s)	223
RsaI	GTAC	1 cut(s)	916
RsaNI	GTAC	1 cut(s)	915
RseI	CAYNNNNRTG	6 cut(s)	72, 203, 581, 797, 1201, 1385
SalI	GTCGAC	1 cut(s)	538
SaqAI	TTAA	4 cut(s)	128, 493, 899, 1363
SatI	GCNGC	4 cut(s)	64, 322, 560, 1216
Sau3AI	GATC	3 cut(s)	56, 290, 836
Sau96I	GGNCC	3 cut(s)	115, 462, 550
ScrFI	CCNGG	3 cut(s)	275, 466, 789
SduI	GDGCHC	2 cut(s)	196, 641
SexAI	ACCWGGT	1 cut(s)	464
SfaNI	GCATC	3 cut(s)	546, 690, 777
SfcI	CTRYAG	1 cut(s)	1004
SfuI	TTCGAA	1 cut(s)	826
SinI	GGWCC	3 cut(s)	115, 462, 550
SmiMI	CAYNNNNRTG	6 cut(s)	72, 203, 581, 797, 1201, 1385
SmlI	CTYRAG	1 cut(s)	1243
SmoI	CTYRAG	1 cut(s)	1243
SphI	GCATGC	1 cut(s)	421
Sse9I	AATT	7 cut(s)	2, 85, 264, 490, 616, 735, 1017
SsiI	CCGC	4 cut(s)	28, 560, 1216, 1461
SspMI	CTAG	1 cut(s)	520
StyD4I	CCNGG	3 cut(s)	273, 464, 787
TaaI	ACNGT	1 cut(s)	1005
TaqI	TCGA	6 cut(s)	398, 539, 629, 826, 1305, 1399
TasI	AATT	7 cut(s)	2, 85, 264, 490, 616, 735, 1017
TauI	GCSGC	2 cut(s)	562, 1218
TfiI	GAWTC	4 cut(s)	948, 1137, 1307, 1417
Tru1I	TTAA	4 cut(s)	128, 493, 899, 1363
Tru9I	TTAA	4 cut(s)	128, 493, 899, 1363
TscAI	CASTG	1 cut(s)	1228
TseI	GCWGC	2 cut(s)	63, 321
TspGWI	ACGGA	1 cut(s)	1422
TspRI	CASTG	1 cut(s)	1228
VpaK11BI	GGWCC	3 cut(s)	115, 462, 550
XapI	RAATTY	3 cut(s)	264, 616, 735
XbaI	TCTAGA	1 cut(s)	519
XceI	RCATGY	1 cut(s)	421
XmiI	GTMKAC	1 cut(s)	539
XmnI	GAANNNNTTC	1 cut(s)	1204
XspI	CTAG	1 cut(s)	520

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.