Ubiquitin fusion degradation protein UFD1
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT4G15420 AT4G15420 |
| fragaria_vesca | FvH4_6g42660 |
| malus_domestica | MD09G1071000.v1.1 MD17G1101600.v1.1 |
| prunus_persica | Prupe.3G213300_v2.0.a1 |
| pyrus_communis | pycom09g03500 pycom17g09600 |
| rosa_chinensis | RchiOBHm_Chr2g0158561 |
| rosa_laevigata | RLG00000021095 |
| rosa_multiflora | Rmu_sc0017496.1_g000003 Rmu_sc0040507.1_g000001 Rmu_sc0040508.1_g000001 |
| rosa_roxburghii | Rroxscaffold_2G00091220 |
| rosa_rugosa | Rorug02G0469900 |
| rosa_samantha | Rh2AG536100 Rh2BG549200 Rh2CG519700 Rh2DG558900 |
| rosa_wichuraiana | Rw2G044380 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 1 cut(s) | 1017 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 965 |
| AccII | CGCG | 1 cut(s) | 240 |
| AclWI | GGATC | 2 cut(s) | 138, 1057 |
| AcsI | RAATTY | 2 cut(s) | 961, 1461 |
| AcuI | CTGAAG | 2 cut(s) | 366, 678 |
| AcyI | GRCGYC | 2 cut(s) | 135, 151 |
| AfaI | GTAC | 5 cut(s) | 255, 347, 1118, 1142, 1205 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 181, 965 |
| AgsI | TTSAA | 6 cut(s) | 575, 732, 761, 1163, 1553, 1669 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 1185 |
| AjnI | CCWGG | 1 cut(s) | 261 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 447, 479 |
| AleI | CACNNNNGTG | 1 cut(s) | 1611 |
| Alw21I | GWGCWC | 2 cut(s) | 422, 1608 |
| AlwI | GGATC | 2 cut(s) | 138, 1057 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 845 |
| Ama87I | CYCGRG | 1 cut(s) | 1469 |
| AoxI | GGCC | 3 cut(s) | 615, 1194, 1356 |
| ApoI | RAATTY | 2 cut(s) | 961, 1461 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 443, 475 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 1430, 1443 |
| AspS9I | GGNCC | 2 cut(s) | 338, 709 |
| AsuHPI | GGTGA | 4 cut(s) | 436, 952, 1178, 1203 |
| AsuII | TTCGAA | 1 cut(s) | 1052 |
| AvaI | CYCGRG | 1 cut(s) | 1469 |
| AvaII | GGWCC | 2 cut(s) | 338, 709 |
| BaeGI | GKGCMC | 2 cut(s) | 867, 1511 |
| BanI | GGYRCC | 1 cut(s) | 1017 |
| BauI | CACGAG | 2 cut(s) | 1607, 1645 |
| BbsI | GAAGAC | 1 cut(s) | 1026 |
| Bbv12I | GWGCWC | 2 cut(s) | 422, 1608 |
| BccI | CCATC | 4 cut(s) | 626, 1477, 1669, 1692 |
| BceAI | ACGGC | 1 cut(s) | 1679 |
| BciT130I | CCWGG | 1 cut(s) | 263 |
| BciVI | GTATCC | 2 cut(s) | 964, 1219 |
| BclI | TGATCA | 2 cut(s) | 187, 331 |
| BfaI | CTAG | 1 cut(s) | 746 |
| BfmI | CTRYAG | 2 cut(s) | 1272, 1569 |
| BfuI | GTATCC | 2 cut(s) | 964, 1219 |
| BisI | GCNGC | 2 cut(s) | 165, 1197 |
| BlsI | GCNGC | 2 cut(s) | 166, 1198 |
| Bme1390I | CCNGG | 1 cut(s) | 263 |
| Bme18I | GGWCC | 2 cut(s) | 338, 709 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 1185 |
| BmeT110I | CYCGRG | 1 cut(s) | 1469 |
| BmgT120I | GGNCC | 2 cut(s) | 338, 709 |
| BmiI | GGNNCC | 4 cut(s) | 339, 340, 957, 1019 |
| BmrFI | CCNGG | 1 cut(s) | 263 |
| BmrI | ACTGGG | 1 cut(s) | 1257 |
| BmsI | GCATC | 5 cut(s) | 151, 385, 916, 1003, 1708 |
| BmuI | ACTGGG | 1 cut(s) | 1257 |
| BpiI | GAAGAC | 1 cut(s) | 1026 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 1326, 1358 |
| Bpu10I | CCTNAGC | 1 cut(s) | 1067 |
| Bpu14I | TTCGAA | 1 cut(s) | 1052 |
| BpuEI | CTTGAG | 2 cut(s) | 164, 734 |
| BsaBI | GATNNNNATC | 1 cut(s) | 1679 |
| BsaHI | GRCGYC | 2 cut(s) | 135, 151 |
| BsaJI | CCNNGG | 1 cut(s) | 262 |
| BsaWI | WCCGGW | 1 cut(s) | 499 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 869, 899 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 181, 965 |
| Bse1I | ACTGG | 1 cut(s) | 1263 |
| Bse8I | GATNNNNATC | 1 cut(s) | 1679 |
| BseBI | CCWGG | 1 cut(s) | 263 |
| BseDI | CCNNGG | 1 cut(s) | 262 |
| BseGI | GGATG | 3 cut(s) | 618, 994, 1680 |
| BseJI | GATNNNNATC | 1 cut(s) | 1679 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 181, 965 |
| BseMII | CTCAG | 4 cut(s) | 5, 1357, 1515, 1593 |
| BseNI | ACTGG | 1 cut(s) | 1263 |
| BseRI | GAGGAG | 2 cut(s) | 465, 1367 |
| BseSI | GKGCMC | 2 cut(s) | 867, 1511 |
| Bsh1236I | CGCG | 1 cut(s) | 240 |
| BshFI | GGCC | 3 cut(s) | 617, 1196, 1358 |
| BshNI | GGYRCC | 1 cut(s) | 1017 |
| BsiHKAI | GWGCWC | 2 cut(s) | 422, 1608 |
| BsiHKCI | CYCGRG | 1 cut(s) | 1469 |
| BsiSI | CCGG | 1 cut(s) | 500 |
| BslFI | GGGAC | 4 cut(s) | 351, 571, 1556, 1595 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 181, 965 |
| BsmFI | GGGAC | 4 cut(s) | 351, 571, 1556, 1595 |
| BsnI | GGCC | 3 cut(s) | 617, 1196, 1358 |
| BsoBI | CYCGRG | 1 cut(s) | 1469 |
| Bsp119I | TTCGAA | 1 cut(s) | 1052 |
| Bsp1286I | GDGCHC | 4 cut(s) | 422, 867, 1511, 1608 |
| Bsp143I | GATC | 6 cut(s) | 143, 187, 279, 316, 331, 1062 |
| BspANI | GGCC | 3 cut(s) | 617, 1196, 1358 |
| BspCNI | CTCAG | 4 cut(s) | 6, 1356, 1514, 1594 |
| BspFNI | CGCG | 1 cut(s) | 240 |
| BspHI | TCATGA | 2 cut(s) | 802, 1282 |
| BspLI | GGNNCC | 4 cut(s) | 339, 340, 957, 1019 |
| BspPI | GGATC | 2 cut(s) | 138, 1057 |
| BspQI | GCTCTTC | 1 cut(s) | 13 |
| BspT104I | TTCGAA | 1 cut(s) | 1052 |
| BspT107I | GGYRCC | 1 cut(s) | 1017 |
| BsrI | ACTGG | 1 cut(s) | 1263 |
| BssECI | CCNNGG | 1 cut(s) | 262 |
| BssMI | GATC | 6 cut(s) | 143, 187, 279, 316, 331, 1062 |
| BssNI | GRCGYC | 2 cut(s) | 135, 151 |
| BssSI | CACGAG | 2 cut(s) | 1607, 1645 |
| Bst2BI | CACGAG | 2 cut(s) | 1607, 1645 |
| Bst2UI | CCWGG | 1 cut(s) | 263 |
| Bst4CI | ACNGT | 9 cut(s) | 364, 676, 1106, 1153, 1172, 1183, 1231, 1254, 1599 |
| Bst6I | CTCTTC | 4 cut(s) | 13, 161, 733, 1473 |
| BstACI | GRCGYC | 2 cut(s) | 135, 151 |
| BstBI | TTCGAA | 1 cut(s) | 1052 |
| BstC8I | GCNNGC | 8 cut(s) | 291, 645, 1194, 1323, 1392, 1528, 1618, 1652 |
| BstDEI | CTNAG | 8 cut(s) | 14, 111, 581, 1067, 1137, 1343, 1501, 1602 |
| BstF5I | GGATG | 3 cut(s) | 618, 994, 1680 |
| BstFNI | CGCG | 1 cut(s) | 240 |
| BstKTI | GATC | 6 cut(s) | 146, 190, 282, 319, 334, 1065 |
| BstMBI | GATC | 6 cut(s) | 143, 187, 279, 316, 331, 1062 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 134, 170, 1515, 1647 |
| BstNI | CCWGG | 1 cut(s) | 263 |
| BstNSI | RCATGY | 2 cut(s) | 647, 1325 |
| BstSCI | CCNGG | 1 cut(s) | 261 |
| BstSFI | CTRYAG | 2 cut(s) | 1272, 1569 |
| BstSLI | GKGCMC | 2 cut(s) | 867, 1511 |
| BstUI | CGCG | 1 cut(s) | 240 |
| BstV2I | GAAGAC | 1 cut(s) | 1026 |
| BstXI | CCANNNNNNTGG | 2 cut(s) | 269, 1046 |
| BsuI | GTATCC | 2 cut(s) | 964, 1219 |
| BsuRI | GGCC | 3 cut(s) | 617, 1196, 1358 |
| BtsCI | GGATG | 3 cut(s) | 618, 994, 1680 |
| BtsI | GCAGTG | 1 cut(s) | 1447 |
| BtsIMutI | CAGTG | 3 cut(s) | 1111, 1447, 1509 |
| Cac8I | GCNNGC | 8 cut(s) | 291, 645, 1194, 1323, 1392, 1528, 1618, 1652 |
| CaiI | CAGNNNCTG | 1 cut(s) | 845 |
| CciI | TCATGA | 2 cut(s) | 802, 1282 |
| Cfr13I | GGNCC | 2 cut(s) | 338, 709 |
| CseI | GACGC | 2 cut(s) | 143, 159 |
| Csp6I | GTAC | 5 cut(s) | 254, 346, 1117, 1141, 1204 |
| CviQI | GTAC | 5 cut(s) | 254, 346, 1117, 1141, 1204 |
| DdeI | CTNAG | 8 cut(s) | 14, 111, 581, 1067, 1137, 1343, 1501, 1602 |
| DpnI | GATC | 6 cut(s) | 145, 189, 281, 318, 333, 1064 |
| DpnII | GATC | 6 cut(s) | 143, 187, 279, 316, 331, 1062 |
| DraI | TTTAAA | 1 cut(s) | 352 |
| DriI | GACNNNNNGTC | 1 cut(s) | 1185 |
| Eam1104I | CTCTTC | 4 cut(s) | 13, 161, 733, 1473 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 1185 |
| EarI | CTCTTC | 4 cut(s) | 13, 161, 733, 1473 |
| Eco47I | GGWCC | 2 cut(s) | 338, 709 |
| Eco57I | CTGAAG | 2 cut(s) | 366, 678 |
| Eco88I | CYCGRG | 1 cut(s) | 1469 |
| EcoO109I | RGGNCCY | 2 cut(s) | 338, 709 |
| EcoRII | CCWGG | 1 cut(s) | 261 |
| FaqI | GGGAC | 4 cut(s) | 351, 571, 1556, 1595 |
| FauI | CCCGC | 2 cut(s) | 1613, 1643 |
| FbaI | TGATCA | 2 cut(s) | 187, 331 |
| Fnu4HI | GCNGC | 2 cut(s) | 165, 1197 |
| FokI | GGATG | 3 cut(s) | 605, 981, 1667 |
| Fsp4HI | GCNGC | 2 cut(s) | 165, 1197 |
| FspBI | CTAG | 1 cut(s) | 746 |
| GluI | GCNGC | 2 cut(s) | 165, 1197 |
| HaeIII | GGCC | 3 cut(s) | 617, 1196, 1358 |
| HapII | CCGG | 1 cut(s) | 500 |
| HgaI | GACGC | 2 cut(s) | 143, 159 |
| Hin1I | GRCGYC | 2 cut(s) | 135, 151 |
| HincII | GTYRAC | 3 cut(s) | 360, 679, 766 |
| HindII | GTYRAC | 3 cut(s) | 360, 679, 766 |
| HindIII | AAGCTT | 1 cut(s) | 1392 |
| HinfI | GANTC | 7 cut(s) | 225, 788, 799, 842, 1363, 1533, 1643 |
| HpaII | CCGG | 1 cut(s) | 500 |
| HphI | GGTGA | 4 cut(s) | 436, 952, 1178, 1203 |
| Hpy166II | GTNNAC | 7 cut(s) | 209, 360, 444, 679, 766, 1117, 1250 |
| Hpy8I | GTNNAC | 7 cut(s) | 209, 360, 444, 679, 766, 1117, 1250 |
| HpyAV | CCTTC | 9 cut(s) | 43, 88, 403, 644, 854, 1048, 1468, 1523, 1663 |
| HpyCH4III | ACNGT | 9 cut(s) | 364, 676, 1106, 1153, 1172, 1183, 1231, 1254, 1599 |
| HpyCH4IV | ACGT | 2 cut(s) | 256, 1368 |
| HpyCH4V | TGCA | 5 cut(s) | 199, 313, 566, 1489, 1699 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 134, 170, 1515, 1647 |
| HpyF3I | CTNAG | 8 cut(s) | 14, 111, 581, 1067, 1137, 1343, 1501, 1602 |
| HpySE526I | ACGT | 2 cut(s) | 256, 1368 |
| Hsp92I | GRCGYC | 2 cut(s) | 135, 151 |
| KflI | GGGWCCC | 1 cut(s) | 338 |
| Ksp22I | TGATCA | 2 cut(s) | 187, 331 |
| Kzo9I | GATC | 6 cut(s) | 143, 187, 279, 316, 331, 1062 |
| LguI | GCTCTTC | 1 cut(s) | 13 |
| LmnI | GCTCC | 5 cut(s) | 43, 417, 688, 955, 1568 |
| LweI | GCATC | 5 cut(s) | 151, 385, 916, 1003, 1708 |
| MaeI | CTAG | 1 cut(s) | 746 |
| MaeII | ACGT | 2 cut(s) | 256, 1368 |
| MaeIII | GTNAC | 3 cut(s) | 702, 1147, 1166 |
| MalI | GATC | 6 cut(s) | 145, 189, 281, 318, 333, 1064 |
| MboI | GATC | 6 cut(s) | 143, 187, 279, 316, 331, 1062 |
| MboII | GAAGA | 9 cut(s) | 30, 116, 148, 372, 467, 671, 720, 1026, 1490 |
| MhlI | GDGCHC | 4 cut(s) | 422, 867, 1511, 1608 |
| MluCI | AATT | 7 cut(s) | 77, 308, 353, 912, 961, 1243, 1461 |
| MlyI | GAGTC | 2 cut(s) | 793, 1637 |
| MmeI | TCCRAC | 2 cut(s) | 196, 1247 |
| MroXI | GAANNNNTTC | 2 cut(s) | 1430, 1443 |
| MseI | TTAA | 5 cut(s) | 303, 351, 719, 816, 1125 |
| MslI | CAYNNNNRTG | 5 cut(s) | 429, 807, 1023, 1427, 1611 |
| MspI | CCGG | 1 cut(s) | 500 |
| MspR9I | CCNGG | 1 cut(s) | 263 |
| MvaI | CCWGG | 1 cut(s) | 263 |
| MvnI | CGCG | 1 cut(s) | 240 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 134, 170, 1515, 1647 |
| NdeII | GATC | 6 cut(s) | 143, 187, 279, 316, 331, 1062 |
| NlaIV | GGNNCC | 4 cut(s) | 339, 340, 957, 1019 |
| NmeAIII | GCCGAG | 1 cut(s) | 163 |
| NmuCI | GTSAC | 1 cut(s) | 1166 |
| NspI | RCATGY | 2 cut(s) | 647, 1325 |
| NspV | TTCGAA | 1 cut(s) | 1052 |
| OliI | CACNNNNGTG | 1 cut(s) | 1611 |
| PaeI | GCATGC | 2 cut(s) | 647, 1325 |
| PaeR7I | CTCGAG | 1 cut(s) | 1469 |
| PagI | TCATGA | 2 cut(s) | 802, 1282 |
| PciSI | GCTCTTC | 1 cut(s) | 13 |
| PdmI | GAANNNNTTC | 2 cut(s) | 1430, 1443 |
| PfeI | GAWTC | 5 cut(s) | 225, 788, 842, 1363, 1533 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 965 |
| PkrI | GCNGC | 2 cut(s) | 166, 1198 |
| PleI | GAGTC | 2 cut(s) | 793, 1637 |
| PpsI | GAGTC | 2 cut(s) | 793, 1637 |
| PpuMI | RGGWCCY | 2 cut(s) | 338, 709 |
| Psp5II | RGGWCCY | 2 cut(s) | 338, 709 |
| Psp6I | CCWGG | 1 cut(s) | 261 |
| PspGI | CCWGG | 1 cut(s) | 261 |
| PspN4I | GGNNCC | 4 cut(s) | 339, 340, 957, 1019 |
| PspPI | GGNCC | 2 cut(s) | 338, 709 |
| PspPPI | RGGWCCY | 2 cut(s) | 338, 709 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 866, 898 |
| PstNI | CAGNNNCTG | 1 cut(s) | 845 |
| RsaI | GTAC | 5 cut(s) | 255, 347, 1118, 1142, 1205 |
| RsaNI | GTAC | 5 cut(s) | 254, 346, 1117, 1141, 1204 |
| RseI | CAYNNNNRTG | 5 cut(s) | 429, 807, 1023, 1427, 1611 |
| SapI | GCTCTTC | 1 cut(s) | 13 |
| SaqAI | TTAA | 5 cut(s) | 303, 351, 719, 816, 1125 |
| SatI | GCNGC | 2 cut(s) | 165, 1197 |
| Sau3AI | GATC | 6 cut(s) | 143, 187, 279, 316, 331, 1062 |
| Sau96I | GGNCC | 2 cut(s) | 338, 709 |
| SchI | GAGTC | 2 cut(s) | 793, 1637 |
| ScrFI | CCNGG | 1 cut(s) | 263 |
| SduI | GDGCHC | 4 cut(s) | 422, 867, 1511, 1608 |
| SfaNI | GCATC | 5 cut(s) | 151, 385, 916, 1003, 1708 |
| SfcI | CTRYAG | 2 cut(s) | 1272, 1569 |
| Sfr274I | CTCGAG | 1 cut(s) | 1469 |
| SfuI | TTCGAA | 1 cut(s) | 1052 |
| SinI | GGWCC | 2 cut(s) | 338, 709 |
| SlaI | CTCGAG | 1 cut(s) | 1469 |
| SmiMI | CAYNNNNRTG | 5 cut(s) | 429, 807, 1023, 1427, 1611 |
| SmlI | CTYRAG | 3 cut(s) | 179, 713, 1469 |
| SmoI | CTYRAG | 3 cut(s) | 179, 713, 1469 |
| SphI | GCATGC | 2 cut(s) | 647, 1325 |
| Sse9I | AATT | 7 cut(s) | 77, 308, 353, 912, 961, 1243, 1461 |
| SspI | AATATT | 1 cut(s) | 517 |
| SspMI | CTAG | 1 cut(s) | 746 |
| StyD4I | CCNGG | 1 cut(s) | 261 |
| TaaI | ACNGT | 9 cut(s) | 364, 676, 1106, 1153, 1172, 1183, 1231, 1254, 1599 |
| TaiI | ACGT | 2 cut(s) | 259, 1371 |
| TaqI | TCGA | 5 cut(s) | 9, 159, 624, 1052, 1470 |
| TasI | AATT | 7 cut(s) | 77, 308, 353, 912, 961, 1243, 1461 |
| TatI | WGTACW | 1 cut(s) | 345 |
| TauI | GCSGC | 2 cut(s) | 167, 1199 |
| TfiI | GAWTC | 5 cut(s) | 225, 788, 842, 1363, 1533 |
| Tru1I | TTAA | 5 cut(s) | 303, 351, 719, 816, 1125 |
| Tru9I | TTAA | 5 cut(s) | 303, 351, 719, 816, 1125 |
| TscAI | CASTG | 3 cut(s) | 1111, 1454, 1509 |
| TseFI | GTSAC | 1 cut(s) | 1166 |
| Tsp45I | GTSAC | 1 cut(s) | 1166 |
| TspDTI | ATGAA | 9 cut(s) | 356, 873, 1041, 1271, 1299, 1361, 1388, 1439, 1452 |
| TspGWI | ACGGA | 1 cut(s) | 1134 |
| TspRI | CASTG | 3 cut(s) | 1111, 1454, 1509 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 965 |
| VpaK11BI | GGWCC | 2 cut(s) | 338, 709 |
| XapI | RAATTY | 2 cut(s) | 961, 1461 |
| XbaI | TCTAGA | 1 cut(s) | 745 |
| XceI | RCATGY | 2 cut(s) | 647, 1325 |
| XhoI | CTCGAG | 1 cut(s) | 1469 |
| XmnI | GAANNNNTTC | 2 cut(s) | 1430, 1443 |
| XspI | CTAG | 1 cut(s) | 746 |