RLG00000021095

Ubiquitin fusion degradation protein UFD1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0011431
Physical Location & Seq
Forward (+)
71922555 .. 71926685
4131 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000021095

Sequence Viewer

Length: 2265 bp
ATGGATTACGAGCTGAGGAGAGCGAGAGAGAAGCTGAACAAGGAGCAGAACGAGAGGAAAGAGATTGCCAGGAAGAGATTGGAGAGGGAGAGAAAGGCCAAAGAAGAAGCCAGGAAGCAAAGAGAAGCCCTTGACGCTGAGAGATCCAGACGCATCTTCGATGCCGAACAAGCCCAGATTAAGGTTGATCAAGAAGTGCAGGAAAGTTTACTTGTGGGACGAGGAATTGTGTTTTATCGTGTGTTGGAAGCGGTAGCTTGTCAGGGTAGTGGGGATAAGATCAAGCTGCCATCGTCATGCTTTAATGAATTGTCGGAAGGAGGTGCTTTTGATAAGGGACCATTGTATTTTAAGTTATCGGTAGTTCATCAGGAGGGTTCTTCGGACATGGTTGATGAAAAGGAAAAGAGTCGGAGCACACATTCAGGTGTTTTGGAGTTCACAGCTGATGAAGGTTTTGTTGGGCTTCCTCCTCATGTATGGCAGAATTTATTTCCAGGGAATACACCAGCGATCCCTTTGATAGAAGTTCGCTATGTCTGGCTGCCTAAAGGAACTTACGCCAAACTCCAACCTCTTAGGGTAGGCTTCTCAGACTTGCCTAACCACAAGGCCATCCTCGAAACAAGCCTGCGCCAGCATGCCACCCTTTCTGAAGATGATATATTTATAGTCAACTATGGGGACCTGGTATATAAGTTGCAGGTTCTTGAATTAAAACCCTCTTCAAGTGTATCTGTTCTAGAAACAGATATTGAAGTCGACATAGTTGGTCCTGATGCCGCTGTGGAGAACACTCATGATAATGTCCTAAAACCACTTACATTTGGAAAATCGGAATTTGGAATGGTCGATGAAGGGCGCTACACATATTACAAGTTCTCAATAGATAATGCTACTTGGGAGAACATTGCTTCTGGGGATGCCAAAGTTGAGGTCAGGATAGAGCCAGAGACAAATTCTGGGGATAGTGATATCTACATATCTAAGCATCCTCTCATATTCCCTACCAGGCACCAGCATGAATGGTCATCCCATGACATTGGTTCGAAGACTTTGATCCTTAGTTCAAAAGATAAGAGCTTGGAGGCAGGAACTTACACTCTTGGTGTTTATGGCTTTAAGGGAAAAACTAAGTACCATGTATCTGTGAATGTTGAAGATGTCAGGAATCAGAAGGTAGGCCAGAAGGTTGCGTCTTCCTCATCGTCAATGGATGTGGATACTGTAGAGTGTAAGAATTGTAAGCGTTATATACCCAGTCGGAGTATTGCACTTCATGAAGCATATTGTAGCAGAAACAATGTTGTTTGTCAGCATACTGGTTGTGGAGTTGTTCTTAGGGTTGAGGAGGCCAAGAATCATGTGCATTGTCAAAAATGTGGACAGCCTTTTCATCAGGAAGAGATGGAGAAGCACATGAAAGTGTTCCATGAGCCGCTTCACTGCCCCTGTGGTATTGTGCTGGAGAAGGAAGAGATGGTGCAACATCAAGCTTCAGTTTGCCCCCTGCGCCTTGTTCCATGTCGATTCTGTGGGGACATGGTTCAAGCCGGAAGCTCTGCTATTGATGTTCGGGACAAGTTAAGGGGATTGTCTGAGCATGAGAGTGTCTGTGGGTCGAGGACTGCCCCATGTGATTCATGTGGGCGTTCCGTGATGTTGAAGGACATGGACATCCACCGCCAAAAGTCGGAGCTTGGAGCGGAGAAAGATAATTGTAAACTGAAAACCCTAACCCTAAGGTGGTCGAAAATTGCGGATCCCGATGCGGCGGCGATGAGGCTATGCGTGCGGCGGGGTGTGGTGACGATGGGTGGAATCAAAAGAGAAGCAGCGAGCAGGTATCTAGTCGCCGGCCCCAATATACTTCGTTCGGCTCGGGAGTGTGGCGGAGCTTTCCGGTTTGACGTCACCCGGCCCGAACAAGGATGGACAGAGTTAAACGTACCTGATACAGTGGATGATGCTGAAATGTTGCTAATCGAGTTGTGGCAACATGGCCGTGATGGTTACCTAATCTTCGCTTGTGACAGGGGAGGATATAGAAGTTTTGACGAAAAGGTTGAGCAAGAGATACAAGTTGTCCTCTTGTCGCAGGAATGTGATTCTTTCAAACATGTGCAACCTCTGCCCTTGCTGCCACTGTTGCCTAGTGATTTTGGGCGCATAGCTGAATGGAGTTTTCTCCATCTAGGAGGTCAAAAAGTCCAACTTGCTCACGATGGCTCCGGACAACCCCTATGTTTTACTCATACCATATGA

Protein Analysis

755

Amino Acids

84.76

Weight (kDa)

6.17

Isoelectric Point (pI)

40.99

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
UFD1_N1 PF03152 89 - 183 4.5e-16 Ubiquitin fusion degradation protein UFD1, N-terminal subdomain 1
UFD1_N2 PF24842 184 - 259 1.1e-27 Ubiquitin fusion degradation protein UFD1, N-terminal subdomain 2
Znf_XAF1_N PF23580 406 - 434 1.1e-14 XIAP-associated factor 1-like, N-terminal zinc finger
TRAFD1-XIAF1_ZnF PF21366 532 - 561 1.6e-09 TRAFD1/XAF1, zinc finger
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0011431)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G15420 AT4G15420
fragaria_vesca FvH4_6g42660
malus_domestica MD09G1071000.v1.1 MD17G1101600.v1.1
prunus_persica Prupe.3G213300_v2.0.a1
pyrus_communis pycom09g03500 pycom17g09600
rosa_chinensis RchiOBHm_Chr2g0158561
rosa_laevigata RLG00000021095
rosa_multiflora Rmu_sc0017496.1_g000003 Rmu_sc0040507.1_g000001 Rmu_sc0040508.1_g000001
rosa_roxburghii Rroxscaffold_2G00091220
rosa_rugosa Rorug02G0469900
rosa_samantha Rh2AG536100 Rh2BG549200 Rh2CG519700 Rh2DG558900
rosa_wichuraiana Rw2G044380

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 1914
Acc36I ACCTGC 2 cut(s) 694, 1833
AccB1I GGYRCC 1 cut(s) 1014
AccBSI CCGCTC 1 cut(s) 1706
AccI GTMKAC 1 cut(s) 762
AccIII TCCGGA 1 cut(s) 2231
AclWI GGATC 5 cut(s) 138, 508, 1054, 1757, 1770
AcoI YGGCCR 1 cut(s) 2002
AcsI RAATTY 3 cut(s) 487, 839, 958
AcuI CTGAAG 2 cut(s) 675, 1482
AcyI GRCGYC 1 cut(s) 1911
AfaI GTAC 2 cut(s) 1139, 1950
AfiI CCNNNNNNNGG 4 cut(s) 181, 1693, 1746, 1928
AflIII ACRYGT 1 cut(s) 2119
AgsI TTSAA 8 cut(s) 713, 729, 758, 1071, 1160, 1550, 1666, 2116
AjnI CCWGG 5 cut(s) 68, 110, 496, 687, 1010
AjuI GAANNNNNNNTTGG 2 cut(s) 444, 476
Alw21I GWGCWC 1 cut(s) 419
Alw26I GTCTC 1 cut(s) 947
AlwI GGATC 5 cut(s) 138, 508, 1054, 1757, 1770
Ama87I CYCGRG 1 cut(s) 1881
Aor13HI TCCGGA 1 cut(s) 2231
AoxI GGCC 7 cut(s) 96, 612, 1183, 1353, 1858, 1919, 2002
ApeKI GCWGC 4 cut(s) 286, 544, 1835, 2140
ApoI RAATTY 3 cut(s) 487, 839, 958
ArsI GACNNNNNNTTYG 2 cut(s) 921, 953
Asp700I GAANNNNTTC 1 cut(s) 1427
AspLEI GCGC 4 cut(s) 636, 864, 1515, 2169
AspS9I GGNCC 5 cut(s) 338, 685, 773, 1859, 1920
AsuC2I CCSGG 1 cut(s) 1918
AsuHPI GGTGA 2 cut(s) 1819, 1906
AsuII TTCGAA 1 cut(s) 1049
AvaI CYCGRG 1 cut(s) 1881
AvaII GGWCC 3 cut(s) 338, 685, 773
AxyI CCTNAGG 1 cut(s) 1742
BamHI GGATCC 1 cut(s) 1762
BanI GGYRCC 1 cut(s) 1014
BbsI GAAGAC 2 cut(s) 1058, 1191
Bbv12I GWGCWC 1 cut(s) 419
BbvCI CCTCAGC 1 cut(s) 14
BbvI GCAGC 4 cut(s) 273, 531, 1847, 2127
BccI CCATC 9 cut(s) 298, 623, 1402, 1474, 1807, 1926, 2003, 2199, 2219
BceAI ACGGC 1 cut(s) 1989
BciT130I CCWGG 5 cut(s) 70, 112, 498, 689, 1012
BciVI GTATCC 1 cut(s) 1216
BclI TGATCA 1 cut(s) 187
BcnI CCSGG 1 cut(s) 1918
BcoDI GTCTC 1 cut(s) 947
BfaI CTAG 4 cut(s) 743, 1850, 2154, 2195
BfmI CTRYAG 1 cut(s) 1227
BfoI RGCGCY 1 cut(s) 865
BfuAI ACCTGC 2 cut(s) 694, 1833
BfuI GTATCC 1 cut(s) 1216
BisI GCNGC 9 cut(s) 287, 545, 783, 1439, 1773, 1776, 1796, 1836, 2141
BlsI GCNGC 9 cut(s) 288, 546, 784, 1440, 1774, 1777, 1797, 1837, 2142
Bme1390I CCNGG 6 cut(s) 70, 112, 498, 689, 1012, 1918
Bme18I GGWCC 3 cut(s) 338, 685, 773
BmeT110I CYCGRG 1 cut(s) 1881
BmgT120I GGNCC 5 cut(s) 338, 685, 773, 1859, 1920
BmiI GGNNCC 6 cut(s) 339, 686, 1016, 1764, 1861, 2230
BmrFI CCNGG 6 cut(s) 70, 112, 498, 689, 1012, 1918
BmrI ACTGGG 1 cut(s) 1254
BmsI GCATC 7 cut(s) 151, 162, 769, 913, 1000, 1759, 1957
BmuI ACTGGG 1 cut(s) 1254
BpiI GAAGAC 2 cut(s) 1058, 1191
BpmI CTGGAG 1 cut(s) 1487
Bpu10I CCTNAGC 1 cut(s) 14
Bpu14I TTCGAA 1 cut(s) 1049
BpuMI CCSGG 1 cut(s) 1918
BsaHI GRCGYC 1 cut(s) 1911
BsaJI CCNNGG 1 cut(s) 497
BsaWI WCCGGW 2 cut(s) 1902, 2231
BsaXI ACNNNNNCTCC 2 cut(s) 2213, 2243
Bsc4I CCNNNNNNNGG 4 cut(s) 181, 1693, 1746, 1928
Bse118I RCCGGY 1 cut(s) 1856
Bse1I ACTGG 2 cut(s) 1260, 1327
Bse21I CCTNAGG 1 cut(s) 1742
Bse3DI GCAATG 1 cut(s) 909
BseAI TCCGGA 1 cut(s) 2231
BseBI CCWGG 5 cut(s) 70, 112, 498, 689, 1012
BseDI CCNNGG 1 cut(s) 497
BseGI GGATG 8 cut(s) 615, 928, 991, 1031, 1222, 1677, 1937, 1969
BseLI CCNNNNNNNGG 4 cut(s) 181, 1693, 1746, 1928
BseMI GCAATG 1 cut(s) 909
BseMII CTCAG 4 cut(s) 5, 129, 606, 1590
BseNI ACTGG 2 cut(s) 1260, 1327
BseRI GAGGAG 3 cut(s) 31, 462, 1364
BseXI GCAGC 4 cut(s) 273, 531, 1847, 2127
BsgI GTGCAG 1 cut(s) 218
BshFI GGCC 7 cut(s) 98, 614, 1185, 1355, 1860, 1921, 2004
BshNI GGYRCC 1 cut(s) 1014
BsiHKAI GWGCWC 1 cut(s) 419
BsiHKCI CYCGRG 1 cut(s) 1881
BsiSI CCGG 5 cut(s) 1554, 1857, 1903, 1918, 2232
BslFI GGGAC 5 cut(s) 231, 351, 698, 1553, 1592
BslI CCNNNNNNNGG 4 cut(s) 181, 1693, 1746, 1928
BsmAI GTCTC 1 cut(s) 947
BsmFI GGGAC 5 cut(s) 231, 351, 698, 1553, 1592
BsnI GGCC 7 cut(s) 98, 614, 1185, 1355, 1860, 1921, 2004
BsoBI CYCGRG 1 cut(s) 1881
Bsp119I TTCGAA 1 cut(s) 1049
Bsp1286I GDGCHC 1 cut(s) 419
Bsp13I TCCGGA 1 cut(s) 2231
Bsp143I GATC 6 cut(s) 143, 187, 279, 513, 1059, 1762
BspANI GGCC 7 cut(s) 98, 614, 1185, 1355, 1860, 1921, 2004
BspCNI CTCAG 4 cut(s) 6, 130, 605, 1591
BspEI TCCGGA 1 cut(s) 2231
BspHI TCATGA 2 cut(s) 799, 1279
BspLI GGNNCC 6 cut(s) 339, 686, 1016, 1764, 1861, 2230
BspMI ACCTGC 2 cut(s) 694, 1833
BspPI GGATC 5 cut(s) 138, 508, 1054, 1757, 1770
BspT104I TTCGAA 1 cut(s) 1049
BspT107I GGYRCC 1 cut(s) 1014
BsrBI CCGCTC 1 cut(s) 1706
BsrDI GCAATG 1 cut(s) 909
BsrFI RCCGGY 1 cut(s) 1856
BsrI ACTGG 2 cut(s) 1260, 1327
BssAI RCCGGY 1 cut(s) 1856
BssECI CCNNGG 1 cut(s) 497
BssMI GATC 6 cut(s) 143, 187, 279, 513, 1059, 1762
BssNI GRCGYC 1 cut(s) 1911
Bst2UI CCWGG 5 cut(s) 70, 112, 498, 689, 1012
Bst4CI ACNGT 3 cut(s) 1228, 1960, 2148
Bst6I CTCTTC 4 cut(s) 68, 730, 1398, 1470
BstACI GRCGYC 1 cut(s) 1911
BstAPI GCANNNNNTGC 1 cut(s) 2131
BstBI TTCGAA 1 cut(s) 1049
BstC8I GCNNGC 6 cut(s) 632, 638, 642, 1793, 1840, 1858
BstEII GGTNACC 1 cut(s) 2012
BstF5I GGATG 8 cut(s) 615, 928, 991, 1031, 1222, 1677, 1937, 1969
BstH2I RGCGCY 1 cut(s) 865
BstHHI GCGC 4 cut(s) 636, 864, 1515, 2169
BstKTI GATC 6 cut(s) 146, 190, 282, 516, 1062, 1765
BstMAI GTCTC 1 cut(s) 947
BstMBI GATC 6 cut(s) 143, 187, 279, 513, 1059, 1762
BstMWI GCNNNNNNNGC 7 cut(s) 134, 170, 1512, 1792, 2131, 2140, 2149
BstNI CCWGG 5 cut(s) 70, 112, 498, 689, 1012
BstNSI RCATGY 2 cut(s) 644, 2123
BstPI GGTNACC 1 cut(s) 2012
BstSCI CCNGG 6 cut(s) 68, 110, 496, 687, 1010, 1916
BstSFI CTRYAG 1 cut(s) 1227
BstV1I GCAGC 4 cut(s) 273, 531, 1847, 2127
BstV2I GAAGAC 2 cut(s) 1058, 1191
BstX2I RGATCY 2 cut(s) 143, 1762
BstXI CCANNNNNNTGG 1 cut(s) 1043
BstYI RGATCY 2 cut(s) 143, 1762
Bsu36I CCTNAGG 1 cut(s) 1742
BsuI GTATCC 1 cut(s) 1216
BsuRI GGCC 7 cut(s) 98, 614, 1185, 1355, 1860, 1921, 2004
BtgZI GCGATG 1 cut(s) 1793
BtsCI GGATG 8 cut(s) 615, 928, 991, 1031, 1222, 1677, 1937, 1969
BtsI GCAGTG 1 cut(s) 1444
BtsIMutI CAGTG 3 cut(s) 1444, 1965, 2144
BveI ACCTGC 2 cut(s) 694, 1833
Cac8I GCNNGC 6 cut(s) 632, 638, 642, 1793, 1840, 1858
CciI TCATGA 2 cut(s) 799, 1279
CfoI GCGC 4 cut(s) 636, 864, 1515, 2169
Cfr10I RCCGGY 1 cut(s) 1856
Cfr13I GGNCC 5 cut(s) 338, 685, 773, 1859, 1920
CseI GACGC 3 cut(s) 143, 159, 1185
CsiI ACCWGGT 1 cut(s) 687
Csp6I GTAC 2 cut(s) 1138, 1949
CspCI CAANNNNNGTGG 2 cut(s) 1200, 1235
CviQI GTAC 2 cut(s) 1138, 1949
DpnI GATC 6 cut(s) 145, 189, 281, 515, 1061, 1764
DpnII GATC 6 cut(s) 143, 187, 279, 513, 1059, 1762
EaeI YGGCCR 1 cut(s) 2002
Eam1104I CTCTTC 4 cut(s) 68, 730, 1398, 1470
EarI CTCTTC 4 cut(s) 68, 730, 1398, 1470
EciI GGCGGA 1 cut(s) 1908
Eco32I GATATC 1 cut(s) 976
Eco47I GGWCC 3 cut(s) 338, 685, 773
Eco57I CTGAAG 2 cut(s) 675, 1482
Eco81I CCTNAGG 1 cut(s) 1742
Eco88I CYCGRG 1 cut(s) 1881
Eco91I GGTNACC 1 cut(s) 2012
EcoO109I RGGNCCY 1 cut(s) 685
EcoO65I GGTNACC 1 cut(s) 2012
EcoRII CCWGG 5 cut(s) 68, 110, 496, 687, 1010
EcoRV GATATC 1 cut(s) 976
FalI AAGNNNNNCTT 2 cut(s) 2199, 2231
FaqI GGGAC 5 cut(s) 231, 351, 698, 1553, 1592
FauI CCCGC 1 cut(s) 1791
FauNDI CATATG 1 cut(s) 2261
FbaI TGATCA 1 cut(s) 187
FblI GTMKAC 1 cut(s) 762
Fnu4HI GCNGC 9 cut(s) 287, 545, 783, 1439, 1773, 1776, 1796, 1836, 2141
FokI GGATG 8 cut(s) 602, 935, 978, 1018, 1229, 1664, 1944, 1976
Fsp4HI GCNGC 9 cut(s) 287, 545, 783, 1439, 1773, 1776, 1796, 1836, 2141
FspBI CTAG 4 cut(s) 743, 1850, 2154, 2195
GlaI GCGC 4 cut(s) 635, 863, 1514, 2168
GluI GCNGC 9 cut(s) 287, 545, 783, 1439, 1773, 1776, 1796, 1836, 2141
GsuI CTGGAG 1 cut(s) 1487
HaeII RGCGCY 1 cut(s) 865
HaeIII GGCC 7 cut(s) 98, 614, 1185, 1355, 1860, 1921, 2004
HapII CCGG 5 cut(s) 1554, 1857, 1903, 1918, 2232
HgaI GACGC 3 cut(s) 143, 159, 1185
HhaI GCGC 4 cut(s) 636, 864, 1515, 2169
Hin1I GRCGYC 1 cut(s) 1911
Hin6I GCGC 4 cut(s) 634, 862, 1513, 2167
HinP1I GCGC 4 cut(s) 634, 862, 1513, 2167
HincII GTYRAC 2 cut(s) 676, 763
HindII GTYRAC 2 cut(s) 676, 763
HindIII AAGCTT 1 cut(s) 1494
HinfI GANTC 7 cut(s) 409, 1171, 1360, 1530, 1640, 1821, 2108
HpaII CCGG 5 cut(s) 1554, 1857, 1903, 1918, 2232
HphI GGTGA 2 cut(s) 1819, 1906
Hpy166II GTNNAC 6 cut(s) 209, 441, 676, 763, 1385, 1724
Hpy8I GTNNAC 6 cut(s) 209, 441, 676, 763, 1385, 1724
HpyAV CCTTC 7 cut(s) 311, 446, 851, 1171, 1183, 1465, 1660
HpyCH4III ACNGT 3 cut(s) 1228, 1960, 2148
HpyCH4IV ACGT 2 cut(s) 1911, 1947
HpyCH4V TGCA 6 cut(s) 199, 703, 1274, 1369, 1486, 2125
HpyF10VI GCNNNNNNNGC 7 cut(s) 134, 170, 1512, 1792, 2131, 2140, 2149
HpySE526I ACGT 2 cut(s) 1911, 1947
Hsp92I GRCGYC 1 cut(s) 1911
HspAI GCGC 4 cut(s) 634, 862, 1513, 2167
Kpn2I TCCGGA 1 cut(s) 2231
KroI GCCGGC 1 cut(s) 1856
KroNI GCCGGC 1 cut(s) 1858
Ksp22I TGATCA 1 cut(s) 187
Kzo9I GATC 6 cut(s) 143, 187, 279, 513, 1059, 1762
LmnI GCTCC 6 cut(s) 43, 414, 1696, 1703, 1895, 2234
Lsp1109I GCAGC 4 cut(s) 273, 531, 1847, 2127
LweI GCATC 7 cut(s) 151, 162, 769, 913, 1000, 1759, 1957
MabI ACCWGGT 1 cut(s) 687
MaeI CTAG 4 cut(s) 743, 1850, 2154, 2195
MaeII ACGT 2 cut(s) 1911, 1947
MaeIII GTNAC 4 cut(s) 1807, 1912, 2012, 2030
MalI GATC 6 cut(s) 145, 189, 281, 515, 1061, 1764
MbiI CCGCTC 1 cut(s) 1706
MboI GATC 6 cut(s) 143, 187, 279, 513, 1059, 1762
MflI RGATCY 2 cut(s) 143, 1762
MhlI GDGCHC 1 cut(s) 419
MluCI AATT 9 cut(s) 225, 308, 487, 713, 839, 958, 1240, 1717, 1755
MlyI GAGTC 1 cut(s) 418
MmeI TCCRAC 7 cut(s) 225, 294, 392, 595, 1244, 1674, 2236
MroI TCCGGA 1 cut(s) 2231
MroNI GCCGGC 1 cut(s) 1856
MroXI GAANNNNTTC 1 cut(s) 1427
MseI TTAA 7 cut(s) 180, 303, 351, 716, 1122, 1586, 1943
MslI CAYNNNNRTG 7 cut(s) 295, 426, 804, 1020, 1424, 1608, 2004
MspA1I CMGCKG 2 cut(s) 446, 785
MspI CCGG 5 cut(s) 1554, 1857, 1903, 1918, 2232
MspR9I CCNGG 6 cut(s) 70, 112, 498, 689, 1012, 1918
MvaI CCWGG 5 cut(s) 70, 112, 498, 689, 1012
MwoI GCNNNNNNNGC 7 cut(s) 134, 170, 1512, 1792, 2131, 2140, 2149
NaeI GCCGGC 1 cut(s) 1858
NciI CCSGG 1 cut(s) 1918
NdeI CATATG 1 cut(s) 2261
NdeII GATC 6 cut(s) 143, 187, 279, 513, 1059, 1762
NgoMIV GCCGGC 1 cut(s) 1856
NlaIV GGNNCC 6 cut(s) 339, 686, 1016, 1764, 1861, 2230
NmuCI GTSAC 3 cut(s) 1807, 1912, 2030
NspI RCATGY 2 cut(s) 644, 2123
NspV TTCGAA 1 cut(s) 1049
PaeI GCATGC 1 cut(s) 644
PagI TCATGA 2 cut(s) 799, 1279
PciI ACATGT 1 cut(s) 2119
PdiI GCCGGC 1 cut(s) 1858
PdmI GAANNNNTTC 1 cut(s) 1427
PfeI GAWTC 6 cut(s) 1171, 1360, 1530, 1640, 1821, 2108
PkrI GCNGC 9 cut(s) 288, 546, 784, 1440, 1774, 1777, 1797, 1837, 2142
PleI GAGTC 1 cut(s) 417
PpsI GAGTC 1 cut(s) 417
PpuMI RGGWCCY 1 cut(s) 685
PscI ACATGT 1 cut(s) 2119
Psp5II RGGWCCY 1 cut(s) 685
Psp6I CCWGG 5 cut(s) 68, 110, 496, 687, 1010
PspEI GGTNACC 1 cut(s) 2012
PspGI CCWGG 5 cut(s) 68, 110, 496, 687, 1010
PspN4I GGNNCC 6 cut(s) 339, 686, 1016, 1764, 1861, 2230
PspPI GGNCC 5 cut(s) 338, 685, 773, 1859, 1920
PspPPI RGGWCCY 1 cut(s) 685
PsuI RGATCY 2 cut(s) 143, 1762
PvuII CAGCTG 1 cut(s) 446
RsaI GTAC 2 cut(s) 1139, 1950
RsaNI GTAC 2 cut(s) 1138, 1949
RseI CAYNNNNRTG 7 cut(s) 295, 426, 804, 1020, 1424, 1608, 2004
SalI GTCGAC 1 cut(s) 761
SaqAI TTAA 7 cut(s) 180, 303, 351, 716, 1122, 1586, 1943
SatI GCNGC 9 cut(s) 287, 545, 783, 1439, 1773, 1776, 1796, 1836, 2141
Sau3AI GATC 6 cut(s) 143, 187, 279, 513, 1059, 1762
Sau96I GGNCC 5 cut(s) 338, 685, 773, 1859, 1920
SchI GAGTC 1 cut(s) 418
ScrFI CCNGG 6 cut(s) 70, 112, 498, 689, 1012, 1918
SduI GDGCHC 1 cut(s) 419
SexAI ACCWGGT 1 cut(s) 687
SfaNI GCATC 7 cut(s) 151, 162, 769, 913, 1000, 1759, 1957
SfcI CTRYAG 1 cut(s) 1227
SfuI TTCGAA 1 cut(s) 1049
SinI GGWCC 3 cut(s) 338, 685, 773
SmiMI CAYNNNNRTG 7 cut(s) 295, 426, 804, 1020, 1424, 1608, 2004
SphI GCATGC 1 cut(s) 644
Sse9I AATT 9 cut(s) 225, 308, 487, 713, 839, 958, 1240, 1717, 1755
SspMI CTAG 4 cut(s) 743, 1850, 2154, 2195
StyD4I CCNGG 6 cut(s) 68, 110, 496, 687, 1010, 1916
TaaI ACNGT 3 cut(s) 1228, 1960, 2148
TaiI ACGT 2 cut(s) 1914, 1950
TaqI TCGA 9 cut(s) 159, 621, 762, 852, 1049, 1528, 1622, 1751, 1986
TasI AATT 9 cut(s) 225, 308, 487, 713, 839, 958, 1240, 1717, 1755
TauI GCSGC 5 cut(s) 785, 1441, 1775, 1778, 1798
TfiI GAWTC 6 cut(s) 1171, 1360, 1530, 1640, 1821, 2108
Tru1I TTAA 7 cut(s) 180, 303, 351, 716, 1122, 1586, 1943
Tru9I TTAA 7 cut(s) 180, 303, 351, 716, 1122, 1586, 1943
TscAI CASTG 3 cut(s) 1451, 1965, 2151
TseFI GTSAC 3 cut(s) 1807, 1912, 2030
TseI GCWGC 4 cut(s) 286, 544, 1835, 2140
Tsp45I GTSAC 3 cut(s) 1807, 1912, 2030
TspGWI ACGGA 1 cut(s) 1645
TspRI CASTG 3 cut(s) 1451, 1965, 2151
VpaK11BI GGWCC 3 cut(s) 338, 685, 773
XapI RAATTY 3 cut(s) 487, 839, 958
XbaI TCTAGA 1 cut(s) 742
XceI RCATGY 2 cut(s) 644, 2123
XcmI CCANNNNNNNNNTGG 1 cut(s) 76
XmiI GTMKAC 1 cut(s) 762
XmnI GAANNNNTTC 1 cut(s) 1427
XspI CTAG 4 cut(s) 743, 1850, 2154, 2195
ZraI GACGTC 1 cut(s) 1912
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.