Prupe.3G247400_v2.0.a1

Alpha beta hydrolase domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp03
OG0011381
Physical Location & Seq
Reverse (-)
23815517 .. 23823425
7909 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.3G247400.2

Sequence Viewer

Length: 1143 bp
ATGGGAGCAGTCACGTCGTCAATGGCAGCCAAGTTCGCGTTTTTCCCACCGAACCCGCCGTCGTACGGACTGGAGAAGGAGGAGGAGAGTGGGAAGCTGAAGATGACTGGGGTAGGGACCAGGGAAAACGTGGACGTTTTGAAGCTGAAGACCAAGAGAGGGAACGACGTCGTGGCGGTGTACATAAGGAATCCGTCGGCGAAGCTCACAGTTTTACACTCGCACGGGAACGCAGCTGATCTGGGTCAGATGTACGAGTTGTTCAGCGAGCTCAGTCTTCATCTCCGAGTCAACTTGTTGGGGTATGACTATTCGGGGTACGGACAATCTACTGGGAAGCCAAGTGAGCAAAACACTTATGCAGACATAGAAGCTGCATATAGATGCCTTGTGGAGAGGTACGGTGCGAAGGAGGAAGATGTTATCTTATATGGGCAATCAGTTGGTAGTGGGCCCACTCTAGATCTAGCAACCCGGTTACCAAGATTGAGGGCGGTGGTTCTTCACAGTCCGATCATGTCTGGTCTTCGTGTCATGTATCCGGTGAAGCGGACATACTGGTTTGACATTTATAAGAACATTGACAAAATACCCTTGGTCAGTTGTCCTGTTCTGGTGATTCATGGGACGGCTGATGATGTTGTGGATTGGTCCCATGGCAAGCAGCTTTGGGAACATTGTAAGGAGAAGTATGAGCCATTATGGATAAAAGGAGGGAATCATTGTGACTTGGAGCTCTACCCACAATACATAAAGCATGTCAAGAAGTTTGTATCAGCTGTTGAGAAATATCCACATCTTAGAAATGGATTTGGGCCAATTACGGATCAACCAGAAAATCCACGGAGAAGCACTGACACTAGGGAGAAATCTTGTTCCACTACAGATCAACAAGAGCATTCTAGACCAAGTACCGACCATAGAGAAAACCCTAGGCTAAGCACAGATCACAGAGAGAAGTCAAGGGCCAGCACTGATAAGAGAGAGAGATCAAGAAAGAGTACGGATCACCCAGAAAAAGCAAGTAATAGCATGGATCAGCCAGAGAAAGCACGAAATAGCATTGACCGCTTTGGAGAGATGTTCAGATCAGTCGGATTGTGCAATATTGATTGTTTTAAGCCCACAGCTACTAGTGCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Abhydrolase_1 Hydrolase_4 Peptidase_S9

Protein Analysis

381

Amino Acids

42.94

Weight (kDa)

8.64

Isoelectric Point (pI)

41.29

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011381)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G30380 AT3G30380
fragaria_vesca FvH4_6g46130 FvH4_6g46130
malus_domestica MD09G1076700.v1.1 MD17G1067200.v1.1
prunus_persica Prupe.3G247400_v2.0.a1 Prupe.3G247400_v2.0.a1
pyrus_communis pycom09g00390 pycom17g06750
rosa_chinensis RchiOBHm_Chr2g0164581
rosa_laevigata RLG00000021467
rosa_multiflora Rmu_co8187214.1_g000001
rosa_roxburghii Rroxscaffold_2G00086470
rosa_rugosa Rorug02G0509300
rosa_samantha Rh2AG576900 Rh2BG588000 Rh2CG558800 Rh2DG598600
rosa_wichuraiana Rw2G047900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 573
AatII GACGTC 1 cut(s) 171
AccII CGCG 1 cut(s) 38
AciI CCGC 5 cut(s) 56, 176, 494, 550, 1069
AclWI GGATC 3 cut(s) 834, 1014, 1044
AcuI CTGAAG 2 cut(s) 119, 167
AcyI GRCGYC 1 cut(s) 168
AfaI GTAC 7 cut(s) 65, 182, 254, 320, 401, 913, 1003
AfiI CCNNNNNNNGG 2 cut(s) 65, 159
AgsI TTSAA 1 cut(s) 142
AhlI ACTAGT 1 cut(s) 1133
AjiI CACGTC 1 cut(s) 15
AjnI CCWGG 1 cut(s) 119
Alw21I GWGCWC 2 cut(s) 273, 738
AlwI GGATC 3 cut(s) 834, 1014, 1044
AoxI GGCC 3 cut(s) 452, 815, 966
ApaI GGGCCC 1 cut(s) 456
ApeKI GCWGC 4 cut(s) 26, 233, 374, 664
ArsI GACNNNNNNTTYG 2 cut(s) 44, 76
AspA2I CCTAGG 1 cut(s) 932
AspS9I GGNCC 6 cut(s) 117, 452, 453, 651, 815, 966
AsuC2I CCSGG 1 cut(s) 475
AsuHPI GGTGA 3 cut(s) 556, 628, 1001
AvaII GGWCC 2 cut(s) 117, 651
AvrII CCTAGG 1 cut(s) 932
BaeGI GKGCMC 1 cut(s) 456
BanII GRGCYC 3 cut(s) 273, 456, 738
BarI GAAGNNNNNNTAC 2 cut(s) 539, 571
BbsI GAAGAC 3 cut(s) 155, 269, 518
Bbv12I GWGCWC 2 cut(s) 273, 738
BbvI GCAGC 4 cut(s) 38, 245, 361, 676
BceAI ACGGC 2 cut(s) 43, 645
BcgI CGANNNNNNTGC 1 cut(s) 31
BciT130I CCWGG 1 cut(s) 121
BciVI GTATCC 1 cut(s) 549
BcnI CCSGG 1 cut(s) 475
BcuI ACTAGT 1 cut(s) 1133
BfaI CTAG 6 cut(s) 461, 467, 861, 903, 933, 1134
BfmI CTRYAG 1 cut(s) 882
BfuI GTATCC 1 cut(s) 549
BglII AGATCT 1 cut(s) 463
BisI GCNGC 4 cut(s) 27, 234, 375, 665
BlnI CCTAGG 1 cut(s) 932
BlpI GCTNAGC 1 cut(s) 938
BlsI GCNGC 4 cut(s) 28, 235, 376, 666
Bme1390I CCNGG 2 cut(s) 121, 475
Bme18I GGWCC 2 cut(s) 117, 651
BmgBI CACGTC 1 cut(s) 15
BmgT120I GGNCC 6 cut(s) 117, 452, 453, 651, 815, 966
BmiI GGNNCC 3 cut(s) 118, 454, 653
BmrFI CCNGG 2 cut(s) 121, 475
BmrI ACTGGG 2 cut(s) 117, 342
BmsI GCATC 1 cut(s) 374
BmuI ACTGGG 2 cut(s) 117, 342
BpiI GAAGAC 3 cut(s) 155, 269, 518
BpmI CTGGAG 1 cut(s) 92
Bpu1102I GCTNAGC 1 cut(s) 938
BpuMI CCSGG 1 cut(s) 475
BsaHI GRCGYC 1 cut(s) 168
BsaJI CCNNGG 5 cut(s) 120, 594, 655, 842, 932
BsaWI WCCGGW 1 cut(s) 541
Bsc4I CCNNNNNNNGG 2 cut(s) 65, 159
Bse1I ACTGG 4 cut(s) 75, 112, 337, 563
BseBI CCWGG 1 cut(s) 121
BseDI CCNNGG 5 cut(s) 120, 594, 655, 842, 932
BseLI CCNNNNNNNGG 2 cut(s) 65, 159
BseMII CTCAG 1 cut(s) 286
BseNI ACTGG 4 cut(s) 75, 112, 337, 563
BseRI GAGGAG 2 cut(s) 95, 98
BseSI GKGCMC 1 cut(s) 456
BseXI GCAGC 4 cut(s) 38, 245, 361, 676
Bsh1236I CGCG 1 cut(s) 38
BshFI GGCC 3 cut(s) 454, 817, 968
BsiHKAI GWGCWC 2 cut(s) 273, 738
BsiSI CCGG 2 cut(s) 475, 542
BsiWI CGTACG 1 cut(s) 63
BslFI GGGAC 3 cut(s) 130, 637, 640
BslI CCNNNNNNNGG 2 cut(s) 65, 159
BsmFI GGGAC 3 cut(s) 130, 637, 640
BsmI GAATGC 1 cut(s) 898
BsnI GGCC 3 cut(s) 454, 817, 968
Bsp120I GGGCCC 1 cut(s) 452
Bsp1286I GDGCHC 3 cut(s) 273, 456, 738
Bsp1407I TGTACA 1 cut(s) 180
Bsp1720I GCTNAGC 1 cut(s) 938
Bsp19I CCATGG 1 cut(s) 655
BspACI CCGC 5 cut(s) 56, 176, 494, 550, 1069
BspANI GGCC 3 cut(s) 454, 817, 968
BspCNI CTCAG 1 cut(s) 285
BspFNI CGCG 1 cut(s) 38
BspLI GGNNCC 3 cut(s) 118, 454, 653
BspPI GGATC 3 cut(s) 834, 1014, 1044
BsrGI TGTACA 1 cut(s) 180
BsrI ACTGG 4 cut(s) 75, 112, 337, 563
BssECI CCNNGG 5 cut(s) 120, 594, 655, 842, 932
BssNI GRCGYC 1 cut(s) 168
BssT1I CCWWGG 3 cut(s) 594, 655, 932
Bst2UI CCWGG 1 cut(s) 121
Bst4CI ACNGT 3 cut(s) 211, 404, 509
BstACI GRCGYC 1 cut(s) 168
BstAUI TGTACA 1 cut(s) 180
BstC8I GCNNGC 3 cut(s) 269, 662, 970
BstDEI CTNAG 3 cut(s) 272, 800, 938
BstDSI CCRYGG 2 cut(s) 655, 842
BstEII GGTNACC 1 cut(s) 477
BstFNI CGCG 1 cut(s) 38
BstMWI GCNNNNNNNGC 4 cut(s) 35, 346, 1068, 1136
BstNI CCWGG 1 cut(s) 121
BstNSI RCATGY 1 cut(s) 761
BstPI GGTNACC 1 cut(s) 477
BstSCI CCNGG 2 cut(s) 119, 473
BstSFI CTRYAG 1 cut(s) 882
BstSLI GKGCMC 1 cut(s) 456
BstUI CGCG 1 cut(s) 38
BstV1I GCAGC 4 cut(s) 38, 245, 361, 676
BstV2I GAAGAC 3 cut(s) 155, 269, 518
BstX2I RGATCY 1 cut(s) 463
BstYI RGATCY 1 cut(s) 463
BsuI GTATCC 1 cut(s) 549
BsuRI GGCC 3 cut(s) 454, 817, 968
BtgI CCRYGG 2 cut(s) 655, 842
BtrI CACGTC 1 cut(s) 15
BtsIMutI CAGTG 2 cut(s) 852, 972
Cac8I GCNNGC 3 cut(s) 269, 662, 970
Cfr13I GGNCC 6 cut(s) 117, 452, 453, 651, 815, 966
Csp6I GTAC 7 cut(s) 64, 181, 253, 319, 400, 912, 1002
CviAII CATG 7 cut(s) 517, 535, 623, 656, 758, 1033, 1140
CviQI GTAC 7 cut(s) 64, 181, 253, 319, 400, 912, 1002
DdeI CTNAG 3 cut(s) 272, 800, 938
Ecl136II GAGCTC 2 cut(s) 271, 736
Eco130I CCWWGG 3 cut(s) 594, 655, 932
Eco24I GRGCYC 3 cut(s) 273, 456, 738
Eco47I GGWCC 2 cut(s) 117, 651
Eco53kI GAGCTC 2 cut(s) 271, 736
Eco57I CTGAAG 2 cut(s) 119, 167
Eco91I GGTNACC 1 cut(s) 477
EcoICRI GAGCTC 2 cut(s) 271, 736
EcoO65I GGTNACC 1 cut(s) 477
EcoRII CCWGG 1 cut(s) 119
EcoT14I CCWWGG 3 cut(s) 594, 655, 932
EcoT38I GRGCYC 3 cut(s) 273, 456, 738
ErhI CCWWGG 3 cut(s) 594, 655, 932
FaeI CATG 7 cut(s) 520, 538, 626, 659, 761, 1036, 1143
FaqI GGGAC 3 cut(s) 130, 637, 640
FatI CATG 7 cut(s) 516, 534, 622, 655, 757, 1032, 1139
FauI CCCGC 1 cut(s) 63
Fnu4HI GCNGC 4 cut(s) 27, 234, 375, 665
FriOI GRGCYC 3 cut(s) 273, 456, 738
Fsp4HI GCNGC 4 cut(s) 27, 234, 375, 665
FspBI CTAG 6 cut(s) 461, 467, 861, 903, 933, 1134
GluI GCNGC 4 cut(s) 27, 234, 375, 665
GsuI CTGGAG 1 cut(s) 92
HaeIII GGCC 3 cut(s) 454, 817, 968
HapII CCGG 2 cut(s) 475, 542
Hin1I GRCGYC 1 cut(s) 168
Hin1II CATG 7 cut(s) 520, 538, 626, 659, 761, 1036, 1143
HincII GTYRAC 1 cut(s) 292
HindII GTYRAC 1 cut(s) 292
HinfI GANTC 4 cut(s) 190, 288, 619, 718
HpaII CCGG 2 cut(s) 475, 542
HphI GGTGA 3 cut(s) 556, 628, 1001
Hpy166II GTNNAC 3 cut(s) 133, 181, 292
Hpy188I TCNGA 5 cut(s) 249, 287, 513, 1088, 1097
Hpy188III TCNNGA 4 cut(s) 461, 763, 903, 993
Hpy8I GTNNAC 3 cut(s) 133, 181, 292
Hpy99I CGWCG 5 cut(s) 19, 64, 170, 173, 199
HpyAV CCTTC 2 cut(s) 70, 403
HpyCH4III ACNGT 3 cut(s) 211, 404, 509
HpyCH4IV ACGT 4 cut(s) 14, 129, 135, 168
HpyCH4V TGCA 4 cut(s) 362, 377, 1104, 1139
HpyF10VI GCNNNNNNNGC 4 cut(s) 35, 346, 1068, 1136
HpyF3I CTNAG 3 cut(s) 272, 800, 938
HpySE526I ACGT 4 cut(s) 14, 129, 135, 168
Hsp92I GRCGYC 1 cut(s) 168
Hsp92II CATG 7 cut(s) 520, 538, 626, 659, 761, 1036, 1143
LmnI GCTCC 2 cut(s) 5, 733
Lsp1109I GCAGC 4 cut(s) 38, 245, 361, 676
LweI GCATC 1 cut(s) 374
MaeI CTAG 6 cut(s) 461, 467, 861, 903, 933, 1134
MaeII ACGT 4 cut(s) 14, 129, 135, 168
MaeIII GTNAC 3 cut(s) 10, 477, 725
MboII GAAGA 6 cut(s) 112, 160, 269, 428, 494, 518
MflI RGATCY 1 cut(s) 463
MhlI GDGCHC 3 cut(s) 273, 456, 738
MluCI AATT 1 cut(s) 819
MlyI GAGTC 1 cut(s) 297
MmeI TCCRAC 1 cut(s) 1075
MnlI CCTC 7 cut(s) 73, 76, 152, 390, 406, 483, 707
MseI TTAA 1 cut(s) 1119
MslI CAYNNNNRTG 1 cut(s) 382
MspA1I CMGCKG 2 cut(s) 236, 779
MspI CCGG 2 cut(s) 475, 542
MspR9I CCNGG 2 cut(s) 121, 475
Mva1269I GAATGC 1 cut(s) 898
MvaI CCWGG 1 cut(s) 121
MvnI CGCG 1 cut(s) 38
MwoI GCNNNNNNNGC 4 cut(s) 35, 346, 1068, 1136
NciI CCSGG 1 cut(s) 475
NcoI CCATGG 1 cut(s) 655
NlaIII CATG 7 cut(s) 520, 538, 626, 659, 761, 1036, 1143
NlaIV GGNNCC 3 cut(s) 118, 454, 653
NmuCI GTSAC 2 cut(s) 10, 725
NspI RCATGY 1 cut(s) 761
PctI GAATGC 1 cut(s) 898
PfeI GAWTC 3 cut(s) 190, 619, 718
Pfl23II CGTACG 1 cut(s) 63
PkrI GCNGC 4 cut(s) 28, 235, 376, 666
PleI GAGTC 1 cut(s) 296
PpsI GAGTC 1 cut(s) 296
PsiI TTATAA 1 cut(s) 573
Psp124BI GAGCTC 2 cut(s) 273, 738
Psp6I CCWGG 1 cut(s) 119
PspEI GGTNACC 1 cut(s) 477
PspGI CCWGG 1 cut(s) 119
PspLI CGTACG 1 cut(s) 63
PspN4I GGNNCC 3 cut(s) 118, 454, 653
PspOMI GGGCCC 1 cut(s) 452
PspPI GGNCC 6 cut(s) 117, 452, 453, 651, 815, 966
PsrI GAACNNNNNNTAC 2 cut(s) 245, 277
PsuI RGATCY 1 cut(s) 463
PvuII CAGCTG 2 cut(s) 236, 779
RsaI GTAC 7 cut(s) 65, 182, 254, 320, 401, 913, 1003
RsaNI GTAC 7 cut(s) 64, 181, 253, 319, 400, 912, 1002
RseI CAYNNNNRTG 1 cut(s) 382
SacI GAGCTC 2 cut(s) 273, 738
SaqAI TTAA 1 cut(s) 1119
SatI GCNGC 4 cut(s) 27, 234, 375, 665
Sau96I GGNCC 6 cut(s) 117, 452, 453, 651, 815, 966
SchI GAGTC 1 cut(s) 297
ScrFI CCNGG 2 cut(s) 121, 475
SduI GDGCHC 3 cut(s) 273, 456, 738
SfaNI GCATC 1 cut(s) 374
SfcI CTRYAG 1 cut(s) 882
SinI GGWCC 2 cut(s) 117, 651
SmiMI CAYNNNNRTG 1 cut(s) 382
SpeI ACTAGT 1 cut(s) 1133
Sse9I AATT 1 cut(s) 819
SsiI CCGC 5 cut(s) 56, 176, 494, 550, 1069
SspI AATATT 1 cut(s) 1108
SspMI CTAG 6 cut(s) 461, 467, 861, 903, 933, 1134
SstI GAGCTC 2 cut(s) 273, 738
StyD4I CCNGG 2 cut(s) 119, 473
StyI CCWWGG 3 cut(s) 594, 655, 932
TaaI ACNGT 3 cut(s) 211, 404, 509
TaiI ACGT 4 cut(s) 17, 132, 138, 171
TasI AATT 1 cut(s) 819
TatI WGTACW 1 cut(s) 180
TfiI GAWTC 3 cut(s) 190, 619, 718
Tru1I TTAA 1 cut(s) 1119
Tru9I TTAA 1 cut(s) 1119
TscAI CASTG 2 cut(s) 859, 979
TseFI GTSAC 2 cut(s) 10, 725
TseI GCWGC 4 cut(s) 26, 233, 374, 664
Tsp45I GTSAC 2 cut(s) 10, 725
TspDTI ATGAA 2 cut(s) 269, 611
TspGWI ACGGA 6 cut(s) 81, 183, 336, 839, 859, 1019
TspRI CASTG 2 cut(s) 859, 979
VpaK11BI GGWCC 2 cut(s) 117, 651
XbaI TCTAGA 2 cut(s) 460, 902
XceI RCATGY 1 cut(s) 761
XcmI CCANNNNNNNNNTGG 1 cut(s) 127
XmaJI CCTAGG 1 cut(s) 932
XspI CTAG 6 cut(s) 461, 467, 861, 903, 933, 1134
ZraI GACGTC 1 cut(s) 169
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.