RLG00000021467

Alpha beta hydrolase domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0011381
Physical Location & Seq
Reverse (-)
75678487 .. 75681430
2944 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000021467

Sequence Viewer

Length: 1149 bp
ATGGGGGCGGTGACGTCATCCATGGCGGCGAAGTTCGCGTTCTTCCCGCCGCACCCGCCGTCGTACGGGGTGGAGGAGGAGGAGGAGGAGGAGAGCGGGAAGCTGAGGATGACGGGAGTGCCGGCGAGGGCGAACGTCGACGTTTTGAAGCTGAAGACGAAGAGGGGAAACGACGTCGTCGCGGTTTACTTTAAGAACCCGGCGGCGAAGCTCACCGTTCTGCACTCCCACGGTAACGCAGCTGATCTGGGCCAGATGTATGAGCTCTTCAGCGAGCTCAGTCTTCATCTCCGAGTCAACTTAATAGGGTATGATTATTCTGGGTACGGACAATCTACTGGGAAGCCAAGTGAGCAAAACACTTATGCAGACATAGAAGCTGTGTATAGATGTCTAGTGGAGAAGTACGGTGCAAAGGAGGAGGATGTAATTTTATACGGGCAATCAGTTGGCAGTGGGCCTACTCTAGATCTGGCAACTCGCTTACAGAGATTGAGGGCAGTGGTTCTTCACAGTCCGATCATGTCTGGCCTTCGAGTCATGTATCCGGTGAAGCGATCGTACTGGTTTGACATTTACAAGAACATTGACAAAATACCGTTGGTCAATTGTCCTGTTTTGGTTATCCATGGGACAGCTGATGATGTTGTGGATTGGTCACATGGCAAGCAACTGTGGGAACACTGTAAGGAGAAGTACGAGCCATTGTGGATAAAAGGAGGGAACCATTGTGACTTGGAGCTCTACCCACAGTACATCAAGCATCTGAAGAAGTTTGTATCGGCCATTGAGAAGTTTCCACGTCTTAAAAATGGATCTGCACCAGTTACGGATCAACTAGAAAAGCCCCGAGGCAGCACCGACATCAGGGAGAAACCTTGGTCCAACACAGATCATAAAGAGGTTTCCAGAACAAGTACTGACCATAGAGAAAACCCTAGGGTAAGCACAGACTGCAGAGAGAAGTCAAGGGCCAGCACTGATAAGAGAGATAGGTCAAAAAAGATTATGGATCAACCTGAAAAGCCAAGTAATAGCGTGGAGCAGCCGGAGAAAGCAAGGAATAGCATTGACCGCTTTGGGGAGATGTTCAGATCAGTTGGCTTCTGCAATATTGATTGTTTTAGGCCCACGGCGACCAGTGTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Abhydrolase_1 Hydrolase_4 Peptidase_S9

Protein Analysis

383

Amino Acids

43.25

Weight (kDa)

8.49

Isoelectric Point (pI)

42.1

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Hydrolase_4 PF12146 69 - 177 3.3e-08 Serine aminopeptidase, S33
Abhydrolase_1 PF00561 74 - 175 2.1e-07 alpha/beta hydrolase fold
Peptidase_S9 PF00326 118 - 232 7.1e-06 Prolyl oligopeptidase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011381)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G30380 AT3G30380
fragaria_vesca FvH4_6g46130 FvH4_6g46130
malus_domestica MD09G1076700.v1.1 MD17G1067200.v1.1
prunus_persica Prupe.3G247400_v2.0.a1 Prupe.3G247400_v2.0.a1
pyrus_communis pycom09g00390 pycom17g06750
rosa_chinensis RchiOBHm_Chr2g0164581
rosa_laevigata RLG00000021467
rosa_multiflora Rmu_co8187214.1_g000001
rosa_roxburghii Rroxscaffold_2G00086470
rosa_rugosa Rorug02G0509300
rosa_samantha Rh2AG576900 Rh2BG588000 Rh2CG558800 Rh2DG598600
rosa_wichuraiana Rw2G047900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 2 cut(s) 17, 177
AccBSI CCGCTC 1 cut(s) 96
AccI GTMKAC 1 cut(s) 138
AccII CGCG 2 cut(s) 38, 182
AciI CCGC 9 cut(s) 8, 26, 47, 50, 56, 96, 182, 203, 1075
AclWI GGATC 3 cut(s) 823, 840, 1020
AcoI YGGCCR 1 cut(s) 783
AcuI CTGAAG 3 cut(s) 173, 253, 788
AcyI GRCGYC 2 cut(s) 14, 174
AfaI GTAC 7 cut(s) 65, 326, 407, 563, 698, 755, 919
AfiI CCNNNNNNNGG 3 cut(s) 65, 867, 1081
AgsI TTSAA 1 cut(s) 148
AjiI CACGTC 1 cut(s) 803
AluBI AGCT 9 cut(s) 103, 151, 211, 242, 265, 277, 380, 638, 742
AluI AGCT 9 cut(s) 103, 151, 211, 242, 265, 277, 380, 638, 742
Alw21I GWGCWC 3 cut(s) 267, 279, 744
AlwI GGATC 3 cut(s) 823, 840, 1020
Ama87I CYCGRG 1 cut(s) 849
AoxI GGCC 6 cut(s) 250, 458, 529, 783, 972, 1127
ApeKI GCWGC 3 cut(s) 239, 855, 1045
AspA2I CCTAGG 1 cut(s) 938
AspS9I GGNCC 5 cut(s) 250, 458, 882, 972, 1128
AsuC2I CCSGG 1 cut(s) 200
AsuHPI GGTGA 3 cut(s) 22, 205, 562
AvaI CYCGRG 1 cut(s) 849
AvaII GGWCC 1 cut(s) 882
AvrII CCTAGG 1 cut(s) 938
BanII GRGCYC 3 cut(s) 267, 279, 744
BarI GAAGNNNNNNTAC 4 cut(s) 251, 283, 545, 577
BbsI GAAGAC 2 cut(s) 161, 275
Bbv12I GWGCWC 3 cut(s) 267, 279, 744
BbvCI CCTCAGC 1 cut(s) 104
BbvI GCAGC 3 cut(s) 251, 867, 1057
BceAI ACGGC 1 cut(s) 43
BciVI GTATCC 1 cut(s) 555
BcnI CCSGG 1 cut(s) 200
BfaI CTAG 4 cut(s) 395, 467, 839, 939
BfmI CTRYAG 1 cut(s) 955
BfuI GTATCC 1 cut(s) 555
BglII AGATCT 1 cut(s) 469
BisI GCNGC 6 cut(s) 27, 50, 204, 240, 856, 1046
BlnI CCTAGG 1 cut(s) 938
BlsI GCNGC 6 cut(s) 28, 51, 205, 241, 857, 1047
BmcAI AGTACT 1 cut(s) 919
Bme1390I CCNGG 1 cut(s) 200
Bme18I GGWCC 1 cut(s) 882
BmeT110I CYCGRG 1 cut(s) 849
BmgBI CACGTC 1 cut(s) 803
BmgT120I GGNCC 5 cut(s) 250, 458, 882, 972, 1128
BmiI GGNNCC 1 cut(s) 725
BmrFI CCNGG 1 cut(s) 200
BmrI ACTGGG 1 cut(s) 348
BmsI GCATC 1 cut(s) 772
BmuI ACTGGG 1 cut(s) 348
BpiI GAAGAC 2 cut(s) 161, 275
Bpu10I CCTNAGC 1 cut(s) 104
BpuMI CCSGG 1 cut(s) 200
BsaHI GRCGYC 2 cut(s) 14, 174
BsaJI CCNNGG 7 cut(s) 21, 229, 628, 850, 878, 938, 1131
BsaWI WCCGGW 1 cut(s) 547
Bsc4I CCNNNNNNNGG 3 cut(s) 65, 867, 1081
Bse118I RCCGGY 1 cut(s) 121
Bse1I ACTGG 4 cut(s) 343, 569, 824, 1140
BseDI CCNNGG 7 cut(s) 21, 229, 628, 850, 878, 938, 1131
BseGI GGATG 3 cut(s) 17, 114, 430
BseLI CCNNNNNNNGG 3 cut(s) 65, 867, 1081
BseMII CTCAG 2 cut(s) 95, 292
BseNI ACTGG 4 cut(s) 343, 569, 824, 1140
BseRI GAGGAG 7 cut(s) 89, 92, 95, 98, 101, 104, 434
BseXI GCAGC 3 cut(s) 251, 867, 1057
BsgI GTGCAG 2 cut(s) 206, 804
Bsh1236I CGCG 2 cut(s) 38, 182
Bsh1285I CGRYCG 1 cut(s) 560
BshFI GGCC 6 cut(s) 252, 460, 531, 785, 974, 1129
BsiEI CGRYCG 1 cut(s) 560
BsiHKAI GWGCWC 3 cut(s) 267, 279, 744
BsiHKCI CYCGRG 1 cut(s) 849
BsiSI CCGG 4 cut(s) 122, 200, 548, 1049
BsiWI CGTACG 1 cut(s) 63
BslFI GGGAC 1 cut(s) 646
BslI CCNNNNNNNGG 3 cut(s) 65, 867, 1081
BsmFI GGGAC 1 cut(s) 646
BsnI GGCC 6 cut(s) 252, 460, 531, 785, 974, 1129
BsoBI CYCGRG 1 cut(s) 849
Bsp1286I GDGCHC 3 cut(s) 267, 279, 744
Bsp143I GATC 9 cut(s) 244, 469, 519, 557, 815, 832, 892, 1012, 1094
Bsp19I CCATGG 2 cut(s) 21, 628
BspACI CCGC 9 cut(s) 8, 26, 47, 50, 56, 96, 182, 203, 1075
BspANI GGCC 6 cut(s) 252, 460, 531, 785, 974, 1129
BspCNI CTCAG 2 cut(s) 96, 291
BspFNI CGCG 2 cut(s) 38, 182
BspLI GGNNCC 1 cut(s) 725
BspMAI CTGCAG 1 cut(s) 959
BspPI GGATC 3 cut(s) 823, 840, 1020
BspQI GCTCTTC 1 cut(s) 272
BsrBI CCGCTC 1 cut(s) 96
BsrFI RCCGGY 1 cut(s) 121
BsrI ACTGG 4 cut(s) 343, 569, 824, 1140
BssAI RCCGGY 1 cut(s) 121
BssECI CCNNGG 7 cut(s) 21, 229, 628, 850, 878, 938, 1131
BssMI GATC 9 cut(s) 244, 469, 519, 557, 815, 832, 892, 1012, 1094
BssNI GRCGYC 2 cut(s) 14, 174
BssT1I CCWWGG 4 cut(s) 21, 628, 878, 938
Bst4CI ACNGT 8 cut(s) 217, 233, 410, 515, 600, 675, 686, 753
Bst6I CTCTTC 2 cut(s) 155, 272
BstACI GRCGYC 2 cut(s) 14, 174
BstAPI GCANNNNNTGC 1 cut(s) 954
BstC8I GCNNGC 4 cut(s) 123, 275, 668, 976
BstDEI CTNAG 2 cut(s) 104, 278
BstDSI CCRYGG 4 cut(s) 21, 229, 628, 1131
BstF5I GGATG 3 cut(s) 17, 114, 430
BstFNI CGCG 2 cut(s) 38, 182
BstKTI GATC 9 cut(s) 247, 472, 522, 560, 818, 835, 895, 1015, 1097
BstMBI GATC 9 cut(s) 244, 469, 519, 557, 815, 832, 892, 1012, 1094
BstMCI CGRYCG 1 cut(s) 560
BstMWI GCNNNNNNNGC 5 cut(s) 35, 55, 352, 954, 1074
BstSCI CCNGG 1 cut(s) 198
BstSFI CTRYAG 1 cut(s) 955
BstUI CGCG 2 cut(s) 38, 182
BstV1I GCAGC 3 cut(s) 251, 867, 1057
BstV2I GAAGAC 2 cut(s) 161, 275
BstX2I RGATCY 2 cut(s) 469, 815
BstYI RGATCY 2 cut(s) 469, 815
BsuI GTATCC 1 cut(s) 555
BsuRI GGCC 6 cut(s) 252, 460, 531, 785, 974, 1129
BtgI CCRYGG 4 cut(s) 21, 229, 628, 1131
BtrI CACGTC 1 cut(s) 803
BtsCI GGATG 3 cut(s) 17, 114, 430
BtsI GCAGTG 2 cut(s) 460, 507
BtsIMutI CAGTG 5 cut(s) 460, 507, 682, 978, 1147
Cac8I GCNNGC 4 cut(s) 123, 275, 668, 976
Cfr10I RCCGGY 1 cut(s) 121
Cfr13I GGNCC 5 cut(s) 250, 458, 882, 972, 1128
Csp6I GTAC 7 cut(s) 64, 325, 406, 562, 697, 754, 918
CviAII CATG 5 cut(s) 22, 523, 541, 629, 662
CviQI GTAC 7 cut(s) 64, 325, 406, 562, 697, 754, 918
DdeI CTNAG 2 cut(s) 104, 278
DpnI GATC 9 cut(s) 246, 471, 521, 559, 817, 834, 894, 1014, 1096
DpnII GATC 9 cut(s) 244, 469, 519, 557, 815, 832, 892, 1012, 1094
EaeI YGGCCR 1 cut(s) 783
Eam1104I CTCTTC 2 cut(s) 155, 272
EarI CTCTTC 2 cut(s) 155, 272
Ecl136II GAGCTC 3 cut(s) 265, 277, 742
Eco130I CCWWGG 4 cut(s) 21, 628, 878, 938
Eco24I GRGCYC 3 cut(s) 267, 279, 744
Eco47I GGWCC 1 cut(s) 882
Eco53kI GAGCTC 3 cut(s) 265, 277, 742
Eco57I CTGAAG 3 cut(s) 173, 253, 788
Eco88I CYCGRG 1 cut(s) 849
EcoICRI GAGCTC 3 cut(s) 265, 277, 742
EcoT14I CCWWGG 4 cut(s) 21, 628, 878, 938
EcoT38I GRGCYC 3 cut(s) 267, 279, 744
ErhI CCWWGG 4 cut(s) 21, 628, 878, 938
FaeI CATG 5 cut(s) 25, 526, 544, 632, 665
FaqI GGGAC 1 cut(s) 646
FatI CATG 5 cut(s) 21, 522, 540, 628, 661
FauI CCCGC 3 cut(s) 54, 63, 89
FblI GTMKAC 1 cut(s) 138
Fnu4HI GCNGC 6 cut(s) 27, 50, 204, 240, 856, 1046
FokI GGATG 3 cut(s) 4, 121, 437
FriOI GRGCYC 3 cut(s) 267, 279, 744
Fsp4HI GCNGC 6 cut(s) 27, 50, 204, 240, 856, 1046
FspBI CTAG 4 cut(s) 395, 467, 839, 939
GluI GCNGC 6 cut(s) 27, 50, 204, 240, 856, 1046
HaeIII GGCC 6 cut(s) 252, 460, 531, 785, 974, 1129
HapII CCGG 4 cut(s) 122, 200, 548, 1049
Hin1I GRCGYC 2 cut(s) 14, 174
Hin1II CATG 5 cut(s) 25, 526, 544, 632, 665
HincII GTYRAC 2 cut(s) 139, 298
HindII GTYRAC 2 cut(s) 139, 298
HinfI GANTC 2 cut(s) 294, 537
HpaII CCGG 4 cut(s) 122, 200, 548, 1049
HphI GGTGA 3 cut(s) 22, 205, 562
Hpy166II GTNNAC 3 cut(s) 139, 187, 298
Hpy188I TCNGA 4 cut(s) 293, 519, 768, 1094
Hpy188III TCNNGA 2 cut(s) 467, 909
Hpy8I GTNNAC 3 cut(s) 139, 187, 298
Hpy99I CGWCG 6 cut(s) 64, 140, 143, 176, 179, 182
HpyAV CCTTC 1 cut(s) 542
HpyCH4III ACNGT 8 cut(s) 217, 233, 410, 515, 600, 675, 686, 753
HpyCH4IV ACGT 5 cut(s) 14, 135, 141, 174, 802
HpyCH4V TGCA 6 cut(s) 223, 368, 413, 821, 957, 1110
HpyF10VI GCNNNNNNNGC 5 cut(s) 35, 55, 352, 954, 1074
HpyF3I CTNAG 2 cut(s) 104, 278
HpySE526I ACGT 5 cut(s) 14, 135, 141, 174, 802
Hsp92I GRCGYC 2 cut(s) 14, 174
Hsp92II CATG 5 cut(s) 25, 526, 544, 632, 665
KroI GCCGGC 1 cut(s) 121
KroNI GCCGGC 1 cut(s) 123
Kzo9I GATC 9 cut(s) 244, 469, 519, 557, 815, 832, 892, 1012, 1094
LguI GCTCTTC 1 cut(s) 272
LmnI GCTCC 2 cut(s) 739, 1042
Lsp1109I GCAGC 3 cut(s) 251, 867, 1057
LweI GCATC 1 cut(s) 772
MaeI CTAG 4 cut(s) 395, 467, 839, 939
MaeII ACGT 5 cut(s) 14, 135, 141, 174, 802
MaeIII GTNAC 5 cut(s) 10, 233, 657, 731, 826
MalI GATC 9 cut(s) 246, 471, 521, 559, 817, 834, 894, 1014, 1096
MbiI CCGCTC 1 cut(s) 96
MboI GATC 9 cut(s) 244, 469, 519, 557, 815, 832, 892, 1012, 1094
MboII GAAGA 7 cut(s) 34, 166, 172, 259, 275, 500, 781
MfeI CAATTG 1 cut(s) 607
MflI RGATCY 2 cut(s) 469, 815
MhlI GDGCHC 3 cut(s) 267, 279, 744
MluCI AATT 2 cut(s) 429, 607
MlyI GAGTC 2 cut(s) 303, 546
MmeI TCCRAC 1 cut(s) 909
MroNI GCCGGC 1 cut(s) 121
MseI TTAA 3 cut(s) 192, 302, 807
MspA1I CMGCKG 2 cut(s) 242, 638
MspI CCGG 4 cut(s) 122, 200, 548, 1049
MspR9I CCNGG 1 cut(s) 200
MunI CAATTG 1 cut(s) 607
MvnI CGCG 2 cut(s) 38, 182
MwoI GCNNNNNNNGC 5 cut(s) 35, 55, 352, 954, 1074
NaeI GCCGGC 1 cut(s) 123
NciI CCSGG 1 cut(s) 200
NcoI CCATGG 2 cut(s) 21, 628
NdeII GATC 9 cut(s) 244, 469, 519, 557, 815, 832, 892, 1012, 1094
NgoMIV GCCGGC 1 cut(s) 121
NlaIII CATG 5 cut(s) 25, 526, 544, 632, 665
NlaIV GGNNCC 1 cut(s) 725
NmuCI GTSAC 3 cut(s) 10, 657, 731
PciSI GCTCTTC 1 cut(s) 272
PdiI GCCGGC 1 cut(s) 123
Pfl23II CGTACG 1 cut(s) 63
PflFI GACNNNGTC 1 cut(s) 176
PkrI GCNGC 6 cut(s) 28, 51, 205, 241, 857, 1047
Ple19I CGATCG 1 cut(s) 560
PleI GAGTC 2 cut(s) 302, 545
PpsI GAGTC 2 cut(s) 302, 545
Psp124BI GAGCTC 3 cut(s) 267, 279, 744
PspLI CGTACG 1 cut(s) 63
PspN4I GGNNCC 1 cut(s) 725
PspPI GGNCC 5 cut(s) 250, 458, 882, 972, 1128
PstI CTGCAG 1 cut(s) 959
PsuI RGATCY 2 cut(s) 469, 815
PsyI GACNNNGTC 1 cut(s) 176
PvuI CGATCG 1 cut(s) 560
PvuII CAGCTG 2 cut(s) 242, 638
RsaI GTAC 7 cut(s) 65, 326, 407, 563, 698, 755, 919
RsaNI GTAC 7 cut(s) 64, 325, 406, 562, 697, 754, 918
SacI GAGCTC 3 cut(s) 267, 279, 744
SalI GTCGAC 1 cut(s) 137
SapI GCTCTTC 1 cut(s) 272
SaqAI TTAA 3 cut(s) 192, 302, 807
SatI GCNGC 6 cut(s) 27, 50, 204, 240, 856, 1046
Sau3AI GATC 9 cut(s) 244, 469, 519, 557, 815, 832, 892, 1012, 1094
Sau96I GGNCC 5 cut(s) 250, 458, 882, 972, 1128
ScaI AGTACT 1 cut(s) 919
SchI GAGTC 2 cut(s) 303, 546
ScrFI CCNGG 1 cut(s) 200
SduI GDGCHC 3 cut(s) 267, 279, 744
SfaNI GCATC 1 cut(s) 772
SfcI CTRYAG 1 cut(s) 955
SgrDI CGTCGACG 1 cut(s) 137
SinI GGWCC 1 cut(s) 882
Sse9I AATT 2 cut(s) 429, 607
SsiI CCGC 9 cut(s) 8, 26, 47, 50, 56, 96, 182, 203, 1075
SspI AATATT 1 cut(s) 1114
SspMI CTAG 4 cut(s) 395, 467, 839, 939
SstI GAGCTC 3 cut(s) 267, 279, 744
StyD4I CCNGG 1 cut(s) 198
StyI CCWWGG 4 cut(s) 21, 628, 878, 938
TaaI ACNGT 8 cut(s) 217, 233, 410, 515, 600, 675, 686, 753
TaiI ACGT 5 cut(s) 17, 138, 144, 177, 805
TaqI TCGA 2 cut(s) 138, 535
TasI AATT 2 cut(s) 429, 607
TatI WGTACW 2 cut(s) 753, 917
TauI GCSGC 3 cut(s) 29, 52, 206
Tru1I TTAA 3 cut(s) 192, 302, 807
Tru9I TTAA 3 cut(s) 192, 302, 807
TscAI CASTG 5 cut(s) 460, 507, 689, 985, 1147
TseFI GTSAC 3 cut(s) 10, 657, 731
TseI GCWGC 3 cut(s) 239, 855, 1045
Tsp45I GTSAC 3 cut(s) 10, 657, 731
TspDTI ATGAA 1 cut(s) 275
TspGWI ACGGA 2 cut(s) 342, 845
TspRI CASTG 5 cut(s) 460, 507, 689, 985, 1147
Tth111I GACNNNGTC 1 cut(s) 176
VpaK11BI GGWCC 1 cut(s) 882
XbaI TCTAGA 1 cut(s) 466
XmaJI CCTAGG 1 cut(s) 938
XmiI GTMKAC 1 cut(s) 138
XspI CTAG 4 cut(s) 395, 467, 839, 939
ZraI GACGTC 2 cut(s) 15, 175
ZrmI AGTACT 1 cut(s) 919
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.