Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8187214.1

Orthogroup ID

OG0011381

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 589

Gene Structure 589 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8187214.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 339 bp

atgggggcggtgacgtcatccatggcggcgaagttcgcgttcttcccgccgcacccgccgtcgtacggggtggaggaggaggaggagagcgggaagctgaggatgacgggagtgccggcgagggcgaacgtcgacgttttgaagctgaagacgaagaggggaaacgacgtcgtcgcggtttactttaagaacccggcggcgaagctcaccgttctgcactcccacggtaacgcagctgatctgggccagatgtatgagctcttcagcgagctcagtcttcacctccgagtcaacttaatagggtatgattattctgggtacggacaatctactgggaag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000428 GO:0000959 GO:0003674 GO:0003824 GO:0003899 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006139 GO:0006351 GO:0006390 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009507 GO:0009536 GO:0009987 GO:0010467 GO:0016070 GO:0016740 GO:0016772 GO:0016779 GO:0018130 GO:0019438 GO:0030880 GO:0032774 GO:0032991 GO:0034062 GO:0034245 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0061695 GO:0071704 GO:0090304 GO:0097659 GO:0097747 GO:0098798 GO:0140053 GO:0140098 GO:1901360 GO:1901362 GO:1901576 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RNA_pol RPOL_N

Protein Analysis

113

Amino Acids

12.28

Weight (kDa)

7.99

Isoelectric Point (pI)

34.01

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011381)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G30380 AT3G30380
fragaria_vesca	FvH4_6g46130 FvH4_6g46130
malus_domestica	MD09G1076700.v1.1 MD17G1067200.v1.1
prunus_persica	Prupe.3G247400_v2.0.a1 Prupe.3G247400_v2.0.a1
pyrus_communis	pycom09g00390 pycom17g06750
rosa_chinensis	RchiOBHm_Chr2g0164581
rosa_laevigata	RLG00000021467
rosa_multiflora	Rmu_co8187214.1_g000001
rosa_roxburghii	Rroxscaffold_2G00086470
rosa_rugosa	Rorug02G0509300
rosa_samantha	Rh2AG576900 Rh2BG588000 Rh2CG558800 Rh2DG598600
rosa_wichuraiana	Rw2G047900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	2 cut(s)	17, 171
AccBSI	CCGCTC	1 cut(s)	90
AccI	GTMKAC	1 cut(s)	132
AccII	CGCG	2 cut(s)	38, 176
AciI	CCGC	8 cut(s)	8, 26, 47, 50, 56, 90, 176, 197
AcuI	CTGAAG	2 cut(s)	167, 247
AcyI	GRCGYC	2 cut(s)	14, 168
AfaI	GTAC	2 cut(s)	65, 320
AfiI	CCNNNNNNNGG	1 cut(s)	65
AgsI	TTSAA	1 cut(s)	142
AluBI	AGCT	6 cut(s)	97, 145, 205, 236, 259, 271
AluI	AGCT	6 cut(s)	97, 145, 205, 236, 259, 271
Alw21I	GWGCWC	2 cut(s)	261, 273
AoxI	GGCC	1 cut(s)	244
ApeKI	GCWGC	1 cut(s)	233
AspS9I	GGNCC	1 cut(s)	244
AsuC2I	CCSGG	1 cut(s)	194
AsuHPI	GGTGA	3 cut(s)	22, 199, 272
BanII	GRGCYC	2 cut(s)	261, 273
BarI	GAAGNNNNNNTAC	2 cut(s)	245, 277
BbsI	GAAGAC	2 cut(s)	155, 269
Bbv12I	GWGCWC	2 cut(s)	261, 273
BbvCI	CCTCAGC	1 cut(s)	98
BbvI	GCAGC	1 cut(s)	245
BceAI	ACGGC	1 cut(s)	43
BcnI	CCSGG	1 cut(s)	194
BisI	GCNGC	4 cut(s)	27, 50, 198, 234
BlsI	GCNGC	4 cut(s)	28, 51, 199, 235
Bme1390I	CCNGG	1 cut(s)	194
BmgT120I	GGNCC	1 cut(s)	244
BmrFI	CCNGG	1 cut(s)	194
BpiI	GAAGAC	2 cut(s)	155, 269
Bpu10I	CCTNAGC	1 cut(s)	98
BpuMI	CCSGG	1 cut(s)	194
BsaHI	GRCGYC	2 cut(s)	14, 168
BsaJI	CCNNGG	2 cut(s)	21, 223
Bsc4I	CCNNNNNNNGG	1 cut(s)	65
Bse118I	RCCGGY	1 cut(s)	115
Bse1I	ACTGG	1 cut(s)	337
BseDI	CCNNGG	2 cut(s)	21, 223
BseGI	GGATG	2 cut(s)	17, 108
BseLI	CCNNNNNNNGG	1 cut(s)	65
BseMII	CTCAG	2 cut(s)	89, 286
BseNI	ACTGG	1 cut(s)	337
BseRI	GAGGAG	4 cut(s)	89, 92, 95, 98
BseXI	GCAGC	1 cut(s)	245
BsgI	GTGCAG	1 cut(s)	200
Bsh1236I	CGCG	2 cut(s)	38, 176
BshFI	GGCC	1 cut(s)	246
BsiHKAI	GWGCWC	2 cut(s)	261, 273
BsiSI	CCGG	2 cut(s)	116, 194
BsiWI	CGTACG	1 cut(s)	63
BslI	CCNNNNNNNGG	1 cut(s)	65
BsnI	GGCC	1 cut(s)	246
Bsp1286I	GDGCHC	2 cut(s)	261, 273
Bsp143I	GATC	1 cut(s)	238
Bsp19I	CCATGG	1 cut(s)	21
BspACI	CCGC	8 cut(s)	8, 26, 47, 50, 56, 90, 176, 197
BspANI	GGCC	1 cut(s)	246
BspCNI	CTCAG	2 cut(s)	90, 285
BspFNI	CGCG	2 cut(s)	38, 176
BspQI	GCTCTTC	1 cut(s)	266
BsrBI	CCGCTC	1 cut(s)	90
BsrFI	RCCGGY	1 cut(s)	115
BsrI	ACTGG	1 cut(s)	337
BssAI	RCCGGY	1 cut(s)	115
BssECI	CCNNGG	2 cut(s)	21, 223
BssMI	GATC	1 cut(s)	238
BssNI	GRCGYC	2 cut(s)	14, 168
BssT1I	CCWWGG	1 cut(s)	21
Bst4CI	ACNGT	2 cut(s)	211, 227
Bst6I	CTCTTC	2 cut(s)	149, 266
BstACI	GRCGYC	2 cut(s)	14, 168
BstC8I	GCNNGC	2 cut(s)	117, 269
BstDEI	CTNAG	2 cut(s)	98, 272
BstDSI	CCRYGG	2 cut(s)	21, 223
BstF5I	GGATG	2 cut(s)	17, 108
BstFNI	CGCG	2 cut(s)	38, 176
BstKTI	GATC	1 cut(s)	241
BstMBI	GATC	1 cut(s)	238
BstMWI	GCNNNNNNNGC	2 cut(s)	35, 55
BstSCI	CCNGG	1 cut(s)	192
BstUI	CGCG	2 cut(s)	38, 176
BstV1I	GCAGC	1 cut(s)	245
BstV2I	GAAGAC	2 cut(s)	155, 269
BsuRI	GGCC	1 cut(s)	246
BtgI	CCRYGG	2 cut(s)	21, 223
BtsCI	GGATG	2 cut(s)	17, 108
Cac8I	GCNNGC	2 cut(s)	117, 269
Cfr10I	RCCGGY	1 cut(s)	115
Cfr13I	GGNCC	1 cut(s)	244
Csp6I	GTAC	2 cut(s)	64, 319
CviAII	CATG	1 cut(s)	22
CviJI	RGCY	7 cut(s)	97, 145, 205, 236, 246, 259, 271
CviKI_1	RGCY	7 cut(s)	97, 145, 205, 236, 246, 259, 271
CviQI	GTAC	2 cut(s)	64, 319
DdeI	CTNAG	2 cut(s)	98, 272
DpnI	GATC	1 cut(s)	240
DpnII	GATC	1 cut(s)	238
Eam1104I	CTCTTC	2 cut(s)	149, 266
EarI	CTCTTC	2 cut(s)	149, 266
Ecl136II	GAGCTC	2 cut(s)	259, 271
Eco130I	CCWWGG	1 cut(s)	21
Eco24I	GRGCYC	2 cut(s)	261, 273
Eco53kI	GAGCTC	2 cut(s)	259, 271
Eco57I	CTGAAG	2 cut(s)	167, 247
EcoICRI	GAGCTC	2 cut(s)	259, 271
EcoT14I	CCWWGG	1 cut(s)	21
EcoT38I	GRGCYC	2 cut(s)	261, 273
ErhI	CCWWGG	1 cut(s)	21
FaeI	CATG	1 cut(s)	25
FaiI	YATR	3 cut(s)	23, 255, 306
FatI	CATG	1 cut(s)	21
FauI	CCCGC	3 cut(s)	54, 63, 83
FblI	GTMKAC	1 cut(s)	132
Fnu4HI	GCNGC	4 cut(s)	27, 50, 198, 234
FokI	GGATG	2 cut(s)	4, 115
FriOI	GRGCYC	2 cut(s)	261, 273
Fsp4HI	GCNGC	4 cut(s)	27, 50, 198, 234
GluI	GCNGC	4 cut(s)	27, 50, 198, 234
HaeIII	GGCC	1 cut(s)	246
HapII	CCGG	2 cut(s)	116, 194
Hin1I	GRCGYC	2 cut(s)	14, 168
Hin1II	CATG	1 cut(s)	25
HincII	GTYRAC	2 cut(s)	133, 292
HindII	GTYRAC	2 cut(s)	133, 292
HinfI	GANTC	1 cut(s)	288
HpaII	CCGG	2 cut(s)	116, 194
HphI	GGTGA	3 cut(s)	22, 199, 272
Hpy166II	GTNNAC	3 cut(s)	133, 181, 292
Hpy188I	TCNGA	1 cut(s)	287
Hpy8I	GTNNAC	3 cut(s)	133, 181, 292
Hpy99I	CGWCG	6 cut(s)	64, 134, 137, 170, 173, 176
HpyCH4III	ACNGT	2 cut(s)	211, 227
HpyCH4IV	ACGT	4 cut(s)	14, 129, 135, 168
HpyCH4V	TGCA	1 cut(s)	217
HpyF10VI	GCNNNNNNNGC	2 cut(s)	35, 55
HpyF3I	CTNAG	2 cut(s)	98, 272
HpySE526I	ACGT	4 cut(s)	14, 129, 135, 168
Hsp92I	GRCGYC	2 cut(s)	14, 168
Hsp92II	CATG	1 cut(s)	25
KroI	GCCGGC	1 cut(s)	115
KroNI	GCCGGC	1 cut(s)	117
Kzo9I	GATC	1 cut(s)	238
LguI	GCTCTTC	1 cut(s)	266
LpnPI	CCDG	6 cut(s)	129, 207, 227, 260, 300, 318
Lsp1109I	GCAGC	1 cut(s)	245
MaeII	ACGT	4 cut(s)	14, 129, 135, 168
MaeIII	GTNAC	2 cut(s)	10, 227
MalI	GATC	1 cut(s)	240
MbiI	CCGCTC	1 cut(s)	90
MboI	GATC	1 cut(s)	238
MboII	GAAGA	5 cut(s)	34, 160, 166, 253, 269
MhlI	GDGCHC	2 cut(s)	261, 273
MlyI	GAGTC	1 cut(s)	297
MnlI	CCTC	8 cut(s)	67, 70, 73, 76, 93, 114, 150, 293
MroNI	GCCGGC	1 cut(s)	115
MseI	TTAA	2 cut(s)	186, 296
MspA1I	CMGCKG	1 cut(s)	236
MspI	CCGG	2 cut(s)	116, 194
MspR9I	CCNGG	1 cut(s)	194
MvnI	CGCG	2 cut(s)	38, 176
MwoI	GCNNNNNNNGC	2 cut(s)	35, 55
NaeI	GCCGGC	1 cut(s)	117
NciI	CCSGG	1 cut(s)	194
NcoI	CCATGG	1 cut(s)	21
NdeII	GATC	1 cut(s)	238
NgoMIV	GCCGGC	1 cut(s)	115
NlaIII	CATG	1 cut(s)	25
NmuCI	GTSAC	1 cut(s)	10
PciSI	GCTCTTC	1 cut(s)	266
PdiI	GCCGGC	1 cut(s)	117
Pfl23II	CGTACG	1 cut(s)	63
PflFI	GACNNNGTC	1 cut(s)	170
PkrI	GCNGC	4 cut(s)	28, 51, 199, 235
PleI	GAGTC	1 cut(s)	296
PpsI	GAGTC	1 cut(s)	296
Psp124BI	GAGCTC	2 cut(s)	261, 273
PspLI	CGTACG	1 cut(s)	63
PspPI	GGNCC	1 cut(s)	244
PsyI	GACNNNGTC	1 cut(s)	170
PvuII	CAGCTG	1 cut(s)	236
RsaI	GTAC	2 cut(s)	65, 320
RsaNI	GTAC	2 cut(s)	64, 319
SacI	GAGCTC	2 cut(s)	261, 273
SalI	GTCGAC	1 cut(s)	131
SapI	GCTCTTC	1 cut(s)	266
SaqAI	TTAA	2 cut(s)	186, 296
SatI	GCNGC	4 cut(s)	27, 50, 198, 234
Sau3AI	GATC	1 cut(s)	238
Sau96I	GGNCC	1 cut(s)	244
SchI	GAGTC	1 cut(s)	297
ScrFI	CCNGG	1 cut(s)	194
SduI	GDGCHC	2 cut(s)	261, 273
SgrDI	CGTCGACG	1 cut(s)	131
SsiI	CCGC	8 cut(s)	8, 26, 47, 50, 56, 90, 176, 197
SstI	GAGCTC	2 cut(s)	261, 273
StyD4I	CCNGG	1 cut(s)	192
StyI	CCWWGG	1 cut(s)	21
TaaI	ACNGT	2 cut(s)	211, 227
TaiI	ACGT	4 cut(s)	17, 132, 138, 171
TaqI	TCGA	1 cut(s)	132
TauI	GCSGC	3 cut(s)	29, 52, 200
Tru1I	TTAA	2 cut(s)	186, 296
Tru9I	TTAA	2 cut(s)	186, 296
TseFI	GTSAC	1 cut(s)	10
TseI	GCWGC	1 cut(s)	233
Tsp45I	GTSAC	1 cut(s)	10
TspGWI	ACGGA	1 cut(s)	336
Tth111I	GACNNNGTC	1 cut(s)	170
XmiI	GTMKAC	1 cut(s)	132
ZraI	GACGTC	2 cut(s)	15, 169

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.