Prupe.4G001000_v2.0.a1

von Willebrand factor (vWF) type A domain

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp04
Physical Location & Seq
Reverse (-)
122482 .. 126470
3989 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.4G001000.5

Sequence Viewer

Length: 1659 bp
ATGGGAATGGGAGGAGCAGGAGGAGGAGCATCGTCAAAATCTAAACTGAGAAATGCAGCGAAGAAAATGGTGGTGGCAGCTGCAAATGCTTGTGGTTCCTTCTCCCGGAGAAAGGCTCTTGTGGATCCCATCGTCTTCGATCATACCAACACCACAGCCACTGCCTCTATCTCAGGTTCTTCAGCGGTGTCTCCCACAACCCCAAAGAATATCTCAGGAGAAGAAGTTGCAAAGGAAACGGAATTTACGATCAAGAGTAACAATATGCCTTCAACTTCAACTAAGAATTTGTGCGCAATATGTCTAGACCCTCTGAGTTACCATAGCAAGAGCAGCACCCCAGGTCTTGCTATATTCACGGCCCAGTGCTCCCATGCTTTCCACTTTGCCTGCATCTCCTCCAATGTCCGCCATGGTAGTGTTACCTGCCCCATCTGCCGTGCCCATTGGACTCAGCTGCCTCGCAATCTGAACCCACCCGGGGGTTCCCTCTCGTCTTGCAACCGACCTGACCCCATCCTCCAAATCCTTGATGACTCTATTGCCACTTTCCGTATCCACAGGCGCTCCTTCTTGCGCTCTGCTCACTATGATGATGATGACCCAATTGAGCCTGATCATATGCCTAATTGGCCTCGTCTCCAACTCTCTCTAATACCCATCCCACCTAGTGCACCCCCTAGCTGGTGCACCCCATACCCATACCATCCGTCCCCACATCACCAAAGCTGTAGCTCTTCATCATTGTTACAATCACCAACTAGGCCAAAGCCTTTTACTCTCTGTGCCTTTTCAGATAGGGCATATCTTTCCGTGAAATTAGCACATCAACGAGCAACAGACTTGGTCTTGGTTGCTAGCCCCAATGGGCCACACTTGAGGCTTCTCAAGCAGTGCATGGCACTGGTGGTTTTTTCTCTTAGACCTATTGACCGTTTGGCCATTGTTACCTACTCATCAGCTGCTGCCCGTCTCTTCCCTTTGAGACGCATGACATCTTATGGGAAGCGAACGGCCCAACAGGTTATTGACCGTCTGTTCTATATGGGGCAAGCAGATCCAATAGAAGGGATCAAGAAAGGAATCAAGATACTTGAAGATCGTGCATACAAGAATCCAGAGTCCAGTATCCTGCATCTGTCTGACAGCCCAACCCAATCCTACCATGCTGCAATGAGCATGGAGTTGCCGATTCCAGTCCATCGCTTTCATGTAGGATTTGGCTTTGGCACTTCAAATGGGTTTATCATGCATGAGTTTGAAGAGTTACTAGGAACACTCATAGGTGGCATCGTTAGAGAAGTCCAGTTGAGAATCAGAATAGGGGAGGAGGCAAGCAGTAGGATCGTAAGGATAGGAGAGCTAAGAGGAGGTGAAGAAAGGAAAATCTTGGTGGAATTGGGTGTGTGTGGACATATCTGTGTGGGATATAGTTATATTGAGGAGGGTGAGATTGACGAACCTTTCACAACAGGAGAAACTGTGGTGAGCATAGGAGACAGCAAAAGTAAGGCAACAGAAGGAGCGGCTGCTGCTTCTGGGACGAGCGATGCAATCATTTGTGGGAGGTCTAGCAGTGCAAGTGTAGAAACTTGGGATTACCATGATCCTTACATGGCTAGAAGATGGGCCAAGCATTTGCATGGCTACAGGCTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

553

Amino Acids

60.21

Weight (kDa)

8.8

Isoelectric Point (pI)

57.47

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 295
Acc36I ACCTGC 1 cut(s) 434
AccBSI CCGCTC 1 cut(s) 1526
AciI CCGC 3 cut(s) 185, 409, 1526
AclWI GGATC 6 cut(s) 119, 132, 1052, 1079, 1352, 1601
AcoI YGGCCR 1 cut(s) 939
AcsI RAATTY 2 cut(s) 242, 286
AcuI CTGAAG 1 cut(s) 165
AdeI CACNNNGTG 1 cut(s) 671
AfiI CCNNNNNNNGG 6 cut(s) 105, 112, 481, 482, 684, 1067
AgsI TTSAA 5 cut(s) 273, 279, 1097, 1236, 1262
AjnI CCWGG 1 cut(s) 340
AluBI AGCT 7 cut(s) 80, 457, 684, 729, 735, 962, 1363
AluI AGCT 7 cut(s) 80, 457, 684, 729, 735, 962, 1363
Alw21I GWGCWC 3 cut(s) 371, 676, 692
Alw26I GTCTC 5 cut(s) 195, 644, 977, 979, 1491
Alw44I GTGCAC 2 cut(s) 672, 688
AlwI GGATC 6 cut(s) 119, 132, 1052, 1079, 1352, 1601
AlwNI CAGNNNCTG 3 cut(s) 161, 965, 1656
Ama87I CYCGRG 1 cut(s) 479
AoxI GGCC 7 cut(s) 360, 632, 764, 869, 939, 1014, 1629
ApaLI GTGCAC 2 cut(s) 672, 688
ApoI RAATTY 2 cut(s) 242, 286
AspLEI GCGC 3 cut(s) 296, 567, 579
AspS9I GGNCC 4 cut(s) 361, 869, 1015, 1629
AsuC2I CCSGG 3 cut(s) 106, 480, 481
AsuHPI GGTGA 5 cut(s) 713, 747, 1385, 1460, 1498
AsuNHI GCTAGC 1 cut(s) 857
AvaI CYCGRG 1 cut(s) 479
BaeGI GKGCMC 3 cut(s) 445, 676, 692
BalI TGGCCA 1 cut(s) 941
BamHI GGATCC 1 cut(s) 124
BbsI GAAGAC 1 cut(s) 127
Bbv12I GWGCWC 3 cut(s) 371, 676, 692
BccI CCATC 7 cut(s) 137, 440, 524, 668, 714, 1209, 1620
BceAI ACGGC 3 cut(s) 375, 423, 1029
BcgI CGANNNNNNTGC 2 cut(s) 1327, 1361
BciT130I CCWGG 1 cut(s) 342
BciVI GTATCC 2 cut(s) 566, 1139
BclI TGATCA 1 cut(s) 616
BcnI CCSGG 3 cut(s) 106, 480, 481
BcoDI GTCTC 5 cut(s) 195, 644, 977, 979, 1491
BfaI CTAG 8 cut(s) 305, 669, 681, 762, 858, 1271, 1572, 1620
BfmI CTRYAG 2 cut(s) 730, 1648
BfoI RGCGCY 1 cut(s) 568
BfuAI ACCTGC 1 cut(s) 434
BfuI GTATCC 2 cut(s) 566, 1139
BglI GCCNNNNNGGC 1 cut(s) 631
Bme1390I CCNGG 4 cut(s) 106, 342, 480, 481
BmeT110I CYCGRG 1 cut(s) 479
BmgT120I GGNCC 4 cut(s) 361, 869, 1015, 1629
BmiI GGNNCC 3 cut(s) 97, 126, 487
BmrFI CCNGG 4 cut(s) 106, 342, 480, 481
BmrI ACTGGG 1 cut(s) 358
BmsI GCATC 5 cut(s) 38, 402, 1144, 1299, 1540
BmtI GCTAGC 1 cut(s) 861
BmuI ACTGGG 1 cut(s) 358
BpiI GAAGAC 1 cut(s) 127
BplI GAGNNNNNCTC 2 cut(s) 100, 132
BpuEI CTTGAG 2 cut(s) 872, 898
BpuMI CCSGG 3 cut(s) 106, 480, 481
BsaJI CCNNGG 4 cut(s) 340, 412, 479, 480
BsaXI ACNNNNNCTCC 6 cut(s) 210, 240, 551, 581, 1467, 1497
Bsc4I CCNNNNNNNGG 6 cut(s) 105, 112, 481, 482, 684, 1067
Bse1I ACTGG 5 cut(s) 364, 909, 1125, 1196, 1306
Bse3DI GCAATG 1 cut(s) 1179
BseBI CCWGG 1 cut(s) 342
BseDI CCNNGG 4 cut(s) 340, 412, 479, 480
BseGI GGATG 3 cut(s) 516, 660, 706
BseLI CCNNNNNNNGG 6 cut(s) 105, 112, 481, 482, 684, 1067
BseMI GCAATG 1 cut(s) 1179
BseMII CTCAG 5 cut(s) 38, 186, 228, 305, 467
BseNI ACTGG 5 cut(s) 364, 909, 1125, 1196, 1306
BseRI GAGGAG 7 cut(s) 27, 36, 39, 388, 1343, 1383, 1457
BseSI GKGCMC 3 cut(s) 445, 676, 692
BshFI GGCC 7 cut(s) 362, 634, 766, 871, 941, 1016, 1631
BsiHKAI GWGCWC 3 cut(s) 371, 676, 692
BsiHKCI CYCGRG 1 cut(s) 479
BsiSI CCGG 2 cut(s) 106, 480
BslFI GGGAC 2 cut(s) 697, 1555
BslI CCNNNNNNNGG 6 cut(s) 105, 112, 481, 482, 684, 1067
BsmAI GTCTC 5 cut(s) 195, 644, 977, 979, 1491
BsmBI CGTCTC 3 cut(s) 644, 977, 979
BsmFI GGGAC 2 cut(s) 697, 1555
BsnI GGCC 7 cut(s) 362, 634, 766, 871, 941, 1016, 1631
BsoBI CYCGRG 1 cut(s) 479
Bsp1286I GDGCHC 4 cut(s) 371, 445, 676, 692
Bsp143I GATC 9 cut(s) 124, 139, 249, 616, 1057, 1071, 1099, 1344, 1606
Bsp19I CCATGG 1 cut(s) 412
BspACI CCGC 3 cut(s) 185, 409, 1526
BspANI GGCC 7 cut(s) 362, 634, 766, 871, 941, 1016, 1631
BspCNI CTCAG 5 cut(s) 39, 185, 227, 306, 466
BspLI GGNNCC 3 cut(s) 97, 126, 487
BspMI ACCTGC 1 cut(s) 434
BspOI GCTAGC 1 cut(s) 861
BspPI GGATC 6 cut(s) 119, 132, 1052, 1079, 1352, 1601
BspQI GCTCTTC 1 cut(s) 742
BsrBI CCGCTC 1 cut(s) 1526
BsrDI GCAATG 1 cut(s) 1179
BsrI ACTGG 5 cut(s) 364, 909, 1125, 1196, 1306
BssECI CCNNGG 4 cut(s) 340, 412, 479, 480
BssMI GATC 9 cut(s) 124, 139, 249, 616, 1057, 1071, 1099, 1344, 1606
BssT1I CCWWGG 1 cut(s) 412
Bst2UI CCWGG 1 cut(s) 342
Bst4CI ACNGT 3 cut(s) 935, 1034, 1483
Bst6I CTCTTC 3 cut(s) 742, 980, 1257
BstC8I GCNNGC 4 cut(s) 391, 859, 1053, 1336
BstDEI CTNAG 8 cut(s) 47, 172, 214, 282, 314, 453, 920, 1364
BstDSI CCRYGG 1 cut(s) 412
BstF5I GGATG 3 cut(s) 516, 660, 706
BstH2I RGCGCY 1 cut(s) 568
BstHHI GCGC 3 cut(s) 296, 567, 579
BstKTI GATC 9 cut(s) 127, 142, 252, 619, 1060, 1074, 1102, 1347, 1609
BstMAI GTCTC 5 cut(s) 195, 644, 977, 979, 1491
BstMBI GATC 9 cut(s) 124, 139, 249, 616, 1057, 1071, 1099, 1344, 1606
BstMWI GCNNNNNNNGC 6 cut(s) 86, 333, 435, 631, 889, 1532
BstNI CCWGG 1 cut(s) 342
BstSCI CCNGG 4 cut(s) 104, 340, 478, 479
BstSFI CTRYAG 2 cut(s) 730, 1648
BstSLI GKGCMC 3 cut(s) 445, 676, 692
BstV2I GAAGAC 1 cut(s) 127
BstX2I RGATCY 2 cut(s) 124, 1057
BstYI RGATCY 2 cut(s) 124, 1057
BsuI GTATCC 2 cut(s) 566, 1139
BsuRI GGCC 7 cut(s) 362, 634, 766, 871, 941, 1016, 1631
BtgI CCRYGG 1 cut(s) 412
BtgZI GCGATG 2 cut(s) 1187, 1563
BtsCI GGATG 3 cut(s) 516, 660, 706
BtsI GCAGTG 3 cut(s) 159, 899, 1582
BtsIMutI CAGTG 5 cut(s) 159, 371, 899, 902, 1582
BveI ACCTGC 1 cut(s) 434
Cac8I GCNNGC 4 cut(s) 391, 859, 1053, 1336
CaiI CAGNNNCTG 3 cut(s) 161, 965, 1656
CfoI GCGC 3 cut(s) 296, 567, 579
Cfr13I GGNCC 4 cut(s) 361, 869, 1015, 1629
Cfr9I CCCGGG 1 cut(s) 479
CseI GACGC 1 cut(s) 996
DdeI CTNAG 8 cut(s) 47, 172, 214, 282, 314, 453, 920, 1364
DpnI GATC 9 cut(s) 126, 141, 251, 618, 1059, 1073, 1101, 1346, 1608
DpnII GATC 9 cut(s) 124, 139, 249, 616, 1057, 1071, 1099, 1344, 1606
DraIII CACNNNGTG 1 cut(s) 671
EaeI YGGCCR 1 cut(s) 939
Eam1104I CTCTTC 3 cut(s) 742, 980, 1257
EarI CTCTTC 3 cut(s) 742, 980, 1257
EciI GGCGGA 1 cut(s) 398
Eco130I CCWWGG 1 cut(s) 412
Eco57I CTGAAG 1 cut(s) 165
Eco88I CYCGRG 1 cut(s) 479
EcoRII CCWGG 1 cut(s) 340
EcoT14I CCWWGG 1 cut(s) 412
EcoT22I ATGCAT 1 cut(s) 1254
ErhI CCWWGG 1 cut(s) 412
Esp3I CGTCTC 3 cut(s) 644, 977, 979
FaqI GGGAC 2 cut(s) 697, 1555
FauNDI CATATG 1 cut(s) 621
FbaI TGATCA 1 cut(s) 616
FokI GGATG 3 cut(s) 503, 647, 693
FspBI CTAG 8 cut(s) 305, 669, 681, 762, 858, 1271, 1572, 1620
FspI TGCGCA 1 cut(s) 295
GlaI GCGC 3 cut(s) 295, 566, 578
HaeII RGCGCY 1 cut(s) 568
HaeIII GGCC 7 cut(s) 362, 634, 766, 871, 941, 1016, 1631
HapII CCGG 2 cut(s) 106, 480
HgaI GACGC 1 cut(s) 996
HhaI GCGC 3 cut(s) 296, 567, 579
Hin6I GCGC 3 cut(s) 294, 565, 577
HinP1I GCGC 3 cut(s) 294, 565, 577
HinfI GANTC 7 cut(s) 451, 536, 1083, 1114, 1121, 1192, 1314
HpaII CCGG 2 cut(s) 106, 480
HphI GGTGA 5 cut(s) 713, 747, 1385, 1460, 1498
Hpy166II GTNNAC 3 cut(s) 674, 690, 1412
Hpy188I TCNGA 6 cut(s) 315, 471, 796, 1144, 1319, 1658
Hpy188III TCNNGA 6 cut(s) 216, 253, 305, 1075, 1087, 1118
Hpy8I GTNNAC 3 cut(s) 674, 690, 1412
HpyAV CCTTC 5 cut(s) 109, 279, 580, 1061, 1514
HpyCH4III ACNGT 3 cut(s) 935, 1034, 1483
HpyF10VI GCNNNNNNNGC 6 cut(s) 86, 333, 435, 631, 889, 1532
HpyF3I CTNAG 8 cut(s) 47, 172, 214, 282, 314, 453, 920, 1364
HspAI GCGC 3 cut(s) 294, 565, 577
Ksp22I TGATCA 1 cut(s) 616
Kzo9I GATC 9 cut(s) 124, 139, 249, 616, 1057, 1071, 1099, 1344, 1606
LguI GCTCTTC 1 cut(s) 742
LmnI GCTCC 5 cut(s) 14, 26, 374, 572, 1523
LweI GCATC 5 cut(s) 38, 402, 1144, 1299, 1540
MaeI CTAG 8 cut(s) 305, 669, 681, 762, 858, 1271, 1572, 1620
MaeIII GTNAC 6 cut(s) 257, 317, 421, 747, 946, 1266
MalI GATC 9 cut(s) 126, 141, 251, 618, 1059, 1073, 1101, 1346, 1608
MbiI CCGCTC 1 cut(s) 1526
MboI GATC 9 cut(s) 124, 139, 249, 616, 1057, 1071, 1099, 1344, 1606
MfeI CAATTG 1 cut(s) 606
MflI RGATCY 2 cut(s) 124, 1057
MhlI GDGCHC 4 cut(s) 371, 445, 676, 692
MlsI TGGCCA 1 cut(s) 941
MluCI AATT 6 cut(s) 242, 286, 606, 628, 818, 1397
MluNI TGGCCA 1 cut(s) 941
MlyI GAGTC 3 cut(s) 445, 530, 1130
MmeI TCCRAC 1 cut(s) 667
Mox20I TGGCCA 1 cut(s) 941
Mph1103I ATGCAT 1 cut(s) 1254
MscI TGGCCA 1 cut(s) 941
MslI CAYNNNNRTG 4 cut(s) 417, 591, 1419, 1641
Msp20I TGGCCA 1 cut(s) 941
MspA1I CMGCKG 4 cut(s) 80, 185, 457, 962
MspI CCGG 2 cut(s) 106, 480
MspR9I CCNGG 4 cut(s) 106, 342, 480, 481
MunI CAATTG 1 cut(s) 606
MvaI CCWGG 1 cut(s) 342
MwoI GCNNNNNNNGC 6 cut(s) 86, 333, 435, 631, 889, 1532
NciI CCSGG 3 cut(s) 106, 480, 481
NcoI CCATGG 1 cut(s) 412
NdeI CATATG 1 cut(s) 621
NdeII GATC 9 cut(s) 124, 139, 249, 616, 1057, 1071, 1099, 1344, 1606
NheI GCTAGC 1 cut(s) 857
NlaIV GGNNCC 3 cut(s) 97, 126, 487
NsbI TGCGCA 1 cut(s) 295
NsiI ATGCAT 1 cut(s) 1254
PciSI GCTCTTC 1 cut(s) 742
PcsI WCGNNNNNNNCGW 1 cut(s) 245
PfeI GAWTC 4 cut(s) 1083, 1114, 1192, 1314
PflFI GACNNNGTC 1 cut(s) 845
PfoI TCCNGGA 1 cut(s) 104
PleI GAGTC 3 cut(s) 445, 530, 1129
PpsI GAGTC 3 cut(s) 445, 530, 1129
Psp6I CCWGG 1 cut(s) 340
PspGI CCWGG 1 cut(s) 340
PspN4I GGNNCC 3 cut(s) 97, 126, 487
PspPI GGNCC 4 cut(s) 361, 869, 1015, 1629
PstNI CAGNNNCTG 3 cut(s) 161, 965, 1656
PsuI RGATCY 2 cut(s) 124, 1057
PsyI GACNNNGTC 1 cut(s) 845
PvuII CAGCTG 3 cut(s) 80, 457, 962
RseI CAYNNNNRTG 4 cut(s) 417, 591, 1419, 1641
SapI GCTCTTC 1 cut(s) 742
Sau3AI GATC 9 cut(s) 124, 139, 249, 616, 1057, 1071, 1099, 1344, 1606
Sau96I GGNCC 4 cut(s) 361, 869, 1015, 1629
SchI GAGTC 3 cut(s) 445, 530, 1130
ScrFI CCNGG 4 cut(s) 106, 342, 480, 481
SduI GDGCHC 4 cut(s) 371, 445, 676, 692
SfaNI GCATC 5 cut(s) 38, 402, 1144, 1299, 1540
SfcI CTRYAG 2 cut(s) 730, 1648
SmaI CCCGGG 1 cut(s) 481
SmiMI CAYNNNNRTG 4 cut(s) 417, 591, 1419, 1641
SmlI CTYRAG 2 cut(s) 877, 887
SmoI CTYRAG 2 cut(s) 877, 887
Sse9I AATT 6 cut(s) 242, 286, 606, 628, 818, 1397
SsiI CCGC 3 cut(s) 185, 409, 1526
SspMI CTAG 8 cut(s) 305, 669, 681, 762, 858, 1271, 1572, 1620
StyD4I CCNGG 4 cut(s) 104, 340, 478, 479
StyI CCWWGG 1 cut(s) 412
TaaI ACNGT 3 cut(s) 935, 1034, 1483
TaqI TCGA 1 cut(s) 138
TasI AATT 6 cut(s) 242, 286, 606, 628, 818, 1397
TauI GCSGC 1 cut(s) 1529
TfiI GAWTC 4 cut(s) 1083, 1114, 1192, 1314
TscAI CASTG 5 cut(s) 166, 371, 899, 909, 1582
TspDTI ATGAA 2 cut(s) 729, 1199
TspGWI ACGGA 4 cut(s) 254, 542, 699, 802
TspMI CCCGGG 1 cut(s) 479
TspRI CASTG 5 cut(s) 166, 371, 899, 909, 1582
Tth111I GACNNNGTC 1 cut(s) 845
VneI GTGCAC 2 cut(s) 672, 688
XapI RAATTY 2 cut(s) 242, 286
XbaI TCTAGA 1 cut(s) 304
XmaI CCCGGG 1 cut(s) 479
XspI CTAG 8 cut(s) 305, 669, 681, 762, 858, 1271, 1572, 1620
Zsp2I ATGCAT 1 cut(s) 1254
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.