Rmu_ssc0000243.1_g000019

von Willebrand factor (vWF) type A domain

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_ssc0000243.1
Physical Location & Seq
Forward (+)
67696 .. 70566
2871 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_ssc0000243.1_g000019.1.cds

Sequence Viewer

Length: 1812 bp
atgggaggaggaggaggactgcgaaaagcggccaagaagatggtggtggcagctgccaatgcatgtggtggttccttctcttccaggaggaagcctctcgtggaccccatcgtcttcttcgatcataccaccgccactgcctccatctcaggttcttcggctgtgtctcccaccaactccacagcagcagaagaagaagaagaagaagaatgcattgcaaaggagacggaatctgcaatcaccaattctaacaatgtaccttcctcttcttcttctaataagatctcaggttcttcggctgtgtctcccaccaactccacagcagcagaagaagaagaagaagaatgcattgcaaaggagatggaatctgcaatcaccaattctaacaatgtaccttcctcttcttcttctaataagaacttgtgcgcaatatgtctagaccctctgagttaccatagcaagggacggatctcagggcaggctatattcacggcccagtgctcccatgcattccactttgcctgcatctcttccaatgtccgccatggtagtgtcacctgccccatctgccgtgcccattggactcagctgccccgcaatctgaacccacctgggggttccctttcctcttgcaacccaactgatcccatcctccaaatccttgatgactctatagccactttccgcatccacaggcgctctttcctgcgctctgctcgctatgatgatgatgacccgattgagcctcccgatcacatgcctaatttcccccgtctccaattctctctagcacccttaccacctagtactccaccccatagctttcaaccgtcctggtgcaccacacacccatatcatccacccccacatcacctgagctatagctccacatcattgttacaatcgccaaccaggccaaagccctatactactatgtatgcctcttcggacagagcttatctttcggtgaaattggcagagcagcgagcaactgattttgtcttggttgctagtcccaacggacctcacttgaggcttctcaagcagtgcatggcattggtggttttctcccttagacctattgatcgtttggccattgttacctactcatcagctgctgctcgtgtcttccctctaagacgcatgacatcttatgggaagcgaacagcccagcaggttattgaccgcctgttctacatggggcaagcagatccagtggaagggctcaagaaagggatcaagatacttcaagatcgtgtatacaagaatcaaaattcgggtatcctgcatctttctgacaccccaactcgatcctaccatgctgctctcaatatggacgtgcccattccagtgcatcgttttcatgtaggatttggatttggcacttcaaatggttttatcatgcatgaatttgaagagttcctcagaagactcataggtggtgttgttagagaaatccagttaaggatcagcacaactgaggaagccagcagtaggattgtaagaataggagagctaagaaacggagaagaaaggaaaatcttagtggacttgagtgtttgtggacatatttgcgtgggatacagctacatagaggatggtgagattgacgaacccatcacaacaggggaaactatggtgagcataggagacggtaaaagtaatatgagtgcagctgaagcagcgtctgctgggtcagggacgagcggtccaattattggtgggaggcctagtagtgcagacagttgggactaccatgatccttacatggctagaagatgggccaaacatttgcatggctacaggctttga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

603

Amino Acids

65.71

Weight (kDa)

7.09

Isoelectric Point (pI)

62.01

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 566
AasI GACNNNNNNGTC 1 cut(s) 110
Acc16I TGCGCA 1 cut(s) 427
Acc36I ACCTGC 2 cut(s) 566, 1165
AccB7I CCANNNNNTGG 1 cut(s) 1718
AccBSI CCGCTC 1 cut(s) 1707
AccI GTMKAC 1 cut(s) 1260
AciI CCGC 7 cut(s) 29, 132, 541, 595, 685, 1186, 1707
AclWI GGATC 7 cut(s) 476, 638, 1205, 1244, 1305, 1475, 1754
AcoI YGGCCR 2 cut(s) 30, 1092
AcsI RAATTY 2 cut(s) 1273, 1409
AcuI CTGAAG 1 cut(s) 1698
AfaI GTAC 3 cut(s) 258, 393, 808
AfiI CCNNNNNNNGG 6 cut(s) 460, 613, 614, 1220, 1494, 1718
AgsI TTSAA 4 cut(s) 827, 1250, 1389, 1415
AhdI GACNNNNNGTC 1 cut(s) 1707
AjiI CACGTC 1 cut(s) 1339
AjnI CCWGG 4 cut(s) 83, 610, 833, 911
Alw21I GWGCWC 2 cut(s) 503, 842
Alw26I GTCTC 5 cut(s) 171, 218, 309, 779, 1644
Alw44I GTGCAC 1 cut(s) 838
AlwI GGATC 7 cut(s) 476, 638, 1205, 1244, 1305, 1475, 1754
AlwNI CAGNNNCTG 2 cut(s) 1118, 1688
AoxI GGCC 6 cut(s) 30, 492, 914, 1092, 1727, 1782
ApaLI GTGCAC 1 cut(s) 838
ApoI RAATTY 2 cut(s) 1273, 1409
AspLEI GCGC 3 cut(s) 428, 699, 711
AspS9I GGNCC 5 cut(s) 103, 493, 1022, 1709, 1782
AsuHPI GGTGA 7 cut(s) 232, 367, 547, 863, 979, 1613, 1651
AvaII GGWCC 3 cut(s) 103, 1022, 1709
BaeGI GKGCMC 3 cut(s) 577, 842, 1344
BalI TGGCCA 1 cut(s) 1094
BanII GRGCYC 1 cut(s) 1227
BauI CACGAG 2 cut(s) 98, 1122
BbsI GAAGAC 3 cut(s) 106, 1120, 1435
Bbv12I GWGCWC 2 cut(s) 503, 842
BccI CCATC 9 cut(s) 34, 116, 152, 355, 572, 656, 1592, 1625, 1773
BceAI ACGGC 2 cut(s) 507, 555
BciT130I CCWGG 4 cut(s) 85, 612, 835, 913
BciVI GTATCC 2 cut(s) 1292, 1574
BcoDI GTCTC 5 cut(s) 171, 218, 309, 779, 1644
BfaI CTAG 6 cut(s) 437, 788, 804, 1011, 1731, 1773
BfmI CTRYAG 3 cut(s) 672, 880, 1801
BfoI RGCGCY 1 cut(s) 700
BfuAI ACCTGC 2 cut(s) 566, 1165
BfuI GTATCC 2 cut(s) 1292, 1574
BglI GCCNNNNNGGC 1 cut(s) 913
BglII AGATCT 1 cut(s) 282
BmcAI AGTACT 1 cut(s) 808
Bme1390I CCNGG 4 cut(s) 85, 612, 835, 913
Bme18I GGWCC 3 cut(s) 103, 1022, 1709
BmeRI GACNNNNNGTC 1 cut(s) 1707
BmgBI CACGTC 1 cut(s) 1339
BmgT120I GGNCC 5 cut(s) 103, 493, 1022, 1709, 1782
BmiI GGNNCC 3 cut(s) 73, 105, 619
BmrFI CCNGG 4 cut(s) 85, 612, 835, 913
BmrI ACTGGG 1 cut(s) 490
BmsI GCATC 4 cut(s) 534, 696, 1297, 1363
BmuI ACTGGG 1 cut(s) 490
BpiI GAAGAC 3 cut(s) 106, 1120, 1435
BplI GAGNNNNNCTC 2 cut(s) 79, 111
Bpu10I CCTNAGC 1 cut(s) 875
BpuEI CTTGAG 4 cut(s) 1025, 1051, 1211, 1573
BsaJI CCNNGG 2 cut(s) 544, 611
BsaXI ACNNNNNCTCC 2 cut(s) 1717, 1747
Bsc4I CCNNNNNNNGG 6 cut(s) 460, 613, 614, 1220, 1494, 1718
Bse1I ACTGG 4 cut(s) 496, 1214, 1349, 1459
Bse3DI GCAATG 2 cut(s) 213, 348
BseBI CCWGG 4 cut(s) 85, 612, 835, 913
BseDI CCNNGG 2 cut(s) 544, 611
BseGI GGATG 4 cut(s) 648, 687, 856, 1603
BseLI CCNNNNNNNGG 6 cut(s) 460, 613, 614, 1220, 1494, 1718
BseMI GCAATG 2 cut(s) 213, 348
BseMII CTCAG 8 cut(s) 162, 300, 437, 486, 599, 866, 1438, 1470
BseNI ACTGG 4 cut(s) 496, 1214, 1349, 1459
BseRI GAGGAG 3 cut(s) 21, 24, 27
BseSI GKGCMC 3 cut(s) 577, 842, 1344
BseYI CCCAGC 2 cut(s) 1170, 1691
BsgI GTGCAG 2 cut(s) 1692, 1758
BshFI GGCC 6 cut(s) 32, 494, 916, 1094, 1729, 1784
BsiHKAI GWGCWC 2 cut(s) 503, 842
BslFI GGGAC 4 cut(s) 477, 999, 1714, 1763
BslI CCNNNNNNNGG 6 cut(s) 460, 613, 614, 1220, 1494, 1718
BsmAI GTCTC 5 cut(s) 171, 218, 309, 779, 1644
BsmBI CGTCTC 3 cut(s) 218, 779, 1644
BsmFI GGGAC 4 cut(s) 477, 999, 1714, 1763
BsmI GAATGC 3 cut(s) 215, 350, 509
BsnI GGCC 6 cut(s) 32, 494, 916, 1094, 1729, 1784
Bsp1286I GDGCHC 5 cut(s) 503, 577, 842, 1227, 1344
Bsp19I CCATGG 1 cut(s) 544
BspACI CCGC 7 cut(s) 29, 132, 541, 595, 685, 1186, 1707
BspANI GGCC 6 cut(s) 32, 494, 916, 1094, 1729, 1784
BspCNI CTCAG 8 cut(s) 161, 299, 438, 485, 598, 867, 1437, 1471
BspLI GGNNCC 3 cut(s) 73, 105, 619
BspMI ACCTGC 2 cut(s) 566, 1165
BspPI GGATC 7 cut(s) 476, 638, 1205, 1244, 1305, 1475, 1754
BsrBI CCGCTC 1 cut(s) 1707
BsrDI GCAATG 2 cut(s) 213, 348
BsrI ACTGG 4 cut(s) 496, 1214, 1349, 1459
BssECI CCNNGG 2 cut(s) 544, 611
BssNAI GTATAC 1 cut(s) 1261
BssSI CACGAG 2 cut(s) 98, 1122
BssT1I CCWWGG 1 cut(s) 544
Bst1107I GTATAC 1 cut(s) 1261
Bst2BI CACGAG 2 cut(s) 98, 1122
Bst2UI CCWGG 4 cut(s) 85, 612, 835, 913
Bst4CI ACNGT 3 cut(s) 831, 1655, 1745
Bst6I CTCTTC 6 cut(s) 85, 271, 406, 535, 949, 1410
BstAPI GCANNNNNTGC 1 cut(s) 1688
BstC8I GCNNGC 6 cut(s) 480, 523, 718, 987, 1206, 1489
BstDSI CCRYGG 1 cut(s) 544
BstF5I GGATG 4 cut(s) 648, 687, 856, 1603
BstH2I RGCGCY 1 cut(s) 700
BstHHI GCGC 3 cut(s) 428, 699, 711
BstMAI GTCTC 5 cut(s) 171, 218, 309, 779, 1644
BstMWI GCNNNNNNNGC 8 cut(s) 59, 567, 717, 913, 1042, 1679, 1682, 1688
BstNI CCWGG 4 cut(s) 85, 612, 835, 913
BstNSI RCATGY 2 cut(s) 66, 760
BstSCI CCNGG 4 cut(s) 83, 610, 833, 911
BstSFI CTRYAG 3 cut(s) 672, 880, 1801
BstSLI GKGCMC 3 cut(s) 577, 842, 1344
BstV2I GAAGAC 3 cut(s) 106, 1120, 1435
BstX2I RGATCY 3 cut(s) 282, 468, 1210
BstXI CCANNNNNNTGG 1 cut(s) 40
BstYI RGATCY 3 cut(s) 282, 468, 1210
BstZ17I GTATAC 1 cut(s) 1261
BsuI GTATCC 2 cut(s) 1292, 1574
BsuRI GGCC 6 cut(s) 32, 494, 916, 1094, 1729, 1784
BtgI CCRYGG 1 cut(s) 544
BtrI CACGTC 1 cut(s) 1339
BtsCI GGATG 4 cut(s) 648, 687, 856, 1603
BtsI GCAGTG 2 cut(s) 135, 1052
BtsIMutI CAGTG 5 cut(s) 135, 503, 1052, 1221, 1356
BveI ACCTGC 2 cut(s) 566, 1165
Cac8I GCNNGC 6 cut(s) 480, 523, 718, 987, 1206, 1489
CaiI CAGNNNCTG 2 cut(s) 1118, 1688
CfoI GCGC 3 cut(s) 428, 699, 711
Cfr13I GGNCC 5 cut(s) 103, 493, 1022, 1709, 1782
CseI GACGC 2 cut(s) 1149, 1674
Csp6I GTAC 3 cut(s) 257, 392, 807
CspCI CAANNNNNGTGG 2 cut(s) 46, 81
CviQI GTAC 3 cut(s) 257, 392, 807
DrdI GACNNNNNNGTC 1 cut(s) 110
DriI GACNNNNNGTC 1 cut(s) 1707
DseDI GACNNNNNNGTC 1 cut(s) 110
EaeI YGGCCR 2 cut(s) 30, 1092
Eam1104I CTCTTC 6 cut(s) 85, 271, 406, 535, 949, 1410
Eam1105I GACNNNNNGTC 1 cut(s) 1707
EarI CTCTTC 6 cut(s) 85, 271, 406, 535, 949, 1410
EciI GGCGGA 1 cut(s) 530
Eco130I CCWWGG 1 cut(s) 544
Eco147I AGGCCT 1 cut(s) 1729
Eco24I GRGCYC 1 cut(s) 1227
Eco47I GGWCC 3 cut(s) 103, 1022, 1709
Eco57I CTGAAG 1 cut(s) 1698
EcoRII CCWGG 4 cut(s) 83, 610, 833, 911
EcoT14I CCWWGG 1 cut(s) 544
EcoT22I ATGCAT 5 cut(s) 64, 215, 350, 511, 1407
EcoT38I GRGCYC 1 cut(s) 1227
ErhI CCWWGG 1 cut(s) 544
Esp3I CGTCTC 3 cut(s) 218, 779, 1644
FaqI GGGAC 4 cut(s) 477, 999, 1714, 1763
FauI CCCGC 1 cut(s) 602
FblI GTMKAC 1 cut(s) 1260
FokI GGATG 4 cut(s) 635, 674, 843, 1610
FriOI GRGCYC 1 cut(s) 1227
FspBI CTAG 6 cut(s) 437, 788, 804, 1011, 1731, 1773
FspI TGCGCA 1 cut(s) 427
GlaI GCGC 3 cut(s) 427, 698, 710
GsaI CCCAGC 2 cut(s) 1174, 1695
HaeII RGCGCY 1 cut(s) 700
HaeIII GGCC 6 cut(s) 32, 494, 916, 1094, 1729, 1784
HgaI GACGC 2 cut(s) 1149, 1674
HhaI GCGC 3 cut(s) 428, 699, 711
Hin6I GCGC 3 cut(s) 426, 697, 709
HinP1I GCGC 3 cut(s) 426, 697, 709
HinfI GANTC 6 cut(s) 230, 365, 583, 668, 1267, 1431
HphI GGTGA 7 cut(s) 232, 367, 547, 863, 979, 1613, 1651
Hpy166II GTNNAC 5 cut(s) 103, 840, 1261, 1549, 1565
Hpy188I TCNGA 5 cut(s) 447, 603, 949, 1297, 1427
Hpy188III TCNNGA 5 cut(s) 437, 749, 1228, 1240, 1250
Hpy8I GTNNAC 5 cut(s) 103, 840, 1261, 1549, 1565
HpyAV CCTTC 4 cut(s) 85, 270, 405, 1214
HpyCH4III ACNGT 3 cut(s) 831, 1655, 1745
HpyCH4IV ACGT 1 cut(s) 1338
HpyF10VI GCNNNNNNNGC 8 cut(s) 59, 567, 717, 913, 1042, 1679, 1682, 1688
HpySE526I ACGT 1 cut(s) 1338
HspAI GCGC 3 cut(s) 426, 697, 709
LmnI GCTCC 2 cut(s) 506, 890
LweI GCATC 4 cut(s) 534, 696, 1297, 1363
MaeI CTAG 6 cut(s) 437, 788, 804, 1011, 1731, 1773
MaeII ACGT 1 cut(s) 1338
MaeIII GTNAC 4 cut(s) 449, 553, 897, 1099
MbiI CCGCTC 1 cut(s) 1707
MflI RGATCY 3 cut(s) 282, 468, 1210
MhlI GDGCHC 5 cut(s) 503, 577, 842, 1227, 1344
MlsI TGGCCA 1 cut(s) 1094
MluCI AATT 8 cut(s) 244, 379, 763, 779, 971, 1273, 1409, 1713
MluNI TGGCCA 1 cut(s) 1094
MlyI GAGTC 3 cut(s) 577, 662, 1425
Mox20I TGGCCA 1 cut(s) 1094
Mph1103I ATGCAT 5 cut(s) 64, 215, 350, 511, 1407
MscI TGGCCA 1 cut(s) 1094
MseI TTAA 1 cut(s) 1463
MslI CAYNNNNRTG 3 cut(s) 549, 1349, 1794
Msp20I TGGCCA 1 cut(s) 1094
MspA1I CMGCKG 4 cut(s) 53, 589, 1115, 1676
MspR9I CCNGG 4 cut(s) 85, 612, 835, 913
Mva1269I GAATGC 3 cut(s) 215, 350, 509
MvaI CCWGG 4 cut(s) 85, 612, 835, 913
MwoI GCNNNNNNNGC 8 cut(s) 59, 567, 717, 913, 1042, 1679, 1682, 1688
NcoI CCATGG 1 cut(s) 544
NlaIV GGNNCC 3 cut(s) 73, 105, 619
NmuCI GTSAC 1 cut(s) 553
NsbI TGCGCA 1 cut(s) 427
NsiI ATGCAT 5 cut(s) 64, 215, 350, 511, 1407
NspI RCATGY 2 cut(s) 66, 760
PaqCI CACCTGC 1 cut(s) 566
PceI AGGCCT 1 cut(s) 1729
PcsI WCGNNNNNNNCGW 1 cut(s) 117
PctI GAATGC 3 cut(s) 215, 350, 509
PfeI GAWTC 3 cut(s) 230, 365, 1267
PflMI CCANNNNNTGG 1 cut(s) 1718
PfoI TCCNGGA 1 cut(s) 83
PleI GAGTC 3 cut(s) 577, 662, 1425
PpsI GAGTC 3 cut(s) 577, 662, 1425
Psp6I CCWGG 4 cut(s) 83, 610, 833, 911
PspFI CCCAGC 2 cut(s) 1170, 1691
PspGI CCWGG 4 cut(s) 83, 610, 833, 911
PspN4I GGNNCC 3 cut(s) 73, 105, 619
PspPI GGNCC 5 cut(s) 103, 493, 1022, 1709, 1782
PstNI CAGNNNCTG 2 cut(s) 1118, 1688
PsuI RGATCY 3 cut(s) 282, 468, 1210
PvuII CAGCTG 4 cut(s) 53, 589, 1115, 1676
RsaI GTAC 3 cut(s) 258, 393, 808
RsaNI GTAC 3 cut(s) 257, 392, 807
RseI CAYNNNNRTG 3 cut(s) 549, 1349, 1794
SaqAI TTAA 1 cut(s) 1463
Sau96I GGNCC 5 cut(s) 103, 493, 1022, 1709, 1782
ScaI AGTACT 1 cut(s) 808
SchI GAGTC 3 cut(s) 577, 662, 1425
ScrFI CCNGG 4 cut(s) 85, 612, 835, 913
SduI GDGCHC 5 cut(s) 503, 577, 842, 1227, 1344
SfaNI GCATC 4 cut(s) 534, 696, 1297, 1363
SfcI CTRYAG 3 cut(s) 672, 880, 1801
SinI GGWCC 3 cut(s) 103, 1022, 1709
SmiMI CAYNNNNRTG 3 cut(s) 549, 1349, 1794
SmlI CTYRAG 4 cut(s) 1030, 1040, 1226, 1552
SmoI CTYRAG 4 cut(s) 1030, 1040, 1226, 1552
Sse9I AATT 8 cut(s) 244, 379, 763, 779, 971, 1273, 1409, 1713
SseBI AGGCCT 1 cut(s) 1729
SsiI CCGC 7 cut(s) 29, 132, 541, 595, 685, 1186, 1707
SspMI CTAG 6 cut(s) 437, 788, 804, 1011, 1731, 1773
StuI AGGCCT 1 cut(s) 1729
StyD4I CCNGG 4 cut(s) 83, 610, 833, 911
StyI CCWWGG 1 cut(s) 544
TaaI ACNGT 3 cut(s) 831, 1655, 1745
TaiI ACGT 1 cut(s) 1341
TaqI TCGA 2 cut(s) 120, 1309
TasI AATT 8 cut(s) 244, 379, 763, 779, 971, 1273, 1409, 1713
TatI WGTACW 1 cut(s) 806
TauI GCSGC 1 cut(s) 32
TfiI GAWTC 3 cut(s) 230, 365, 1267
Tru1I TTAA 1 cut(s) 1463
Tru9I TTAA 1 cut(s) 1463
TscAI CASTG 5 cut(s) 142, 503, 1052, 1221, 1356
TseFI GTSAC 1 cut(s) 553
Tsp45I GTSAC 1 cut(s) 553
TspDTI ATGAA 2 cut(s) 1352, 1422
TspGWI ACGGA 4 cut(s) 242, 481, 1035, 1539
TspRI CASTG 5 cut(s) 142, 503, 1052, 1221, 1356
Van91I CCANNNNNTGG 1 cut(s) 1718
VneI GTGCAC 1 cut(s) 838
VpaK11BI GGWCC 3 cut(s) 103, 1022, 1709
XapI RAATTY 2 cut(s) 1273, 1409
XbaI TCTAGA 1 cut(s) 436
XceI RCATGY 2 cut(s) 66, 760
XcmI CCANNNNNNNNNTGG 1 cut(s) 40
XmiI GTMKAC 1 cut(s) 1260
XspI CTAG 6 cut(s) 437, 788, 804, 1011, 1731, 1773
ZrmI AGTACT 1 cut(s) 808
Zsp2I ATGCAT 5 cut(s) 64, 215, 350, 511, 1407
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.