pycom05g33030

von Willebrand factor (vWF) type A domain

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr5
Physical Location & Seq
Forward (+)
32216464 .. 32218940
2477 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom05g33030.1

Sequence Viewer

Length: 1695 bp
ATGGGAGGAGGAGGAGGCGCATCTTCAAAACTGAGAAAAGCAGCAAAGAAAATGGCGGTGGCTGCTGCAAATGCATGTGGTGGTTCCTTCTCCCGCAGAAAGACCATCGTCTCCGATCATACCAACACTACCACTCCCACTATCTCAGGTTCTTCAGCCGTGTCTCCAACAAACCCAACGAATGTCCAACCAGCAACAGCAGCAGCAAAAGAAGAAGAAGGTGCAAAAGAAACGGAAATGACAATCAATTATAGCAATGTGCCTTCTGCTAAGAGTTTGTGCGCAATATGTCTAGACCCTCTGAGTTACCATAGCAAGGGGAGCAGCCCAGGGCAGGCTATATTCACGGCCCAGTGCTCCCATGCTTTCCACTTTTCCTGCATCTCCTCCAATGTTCGCCATGGTAGTGTTACCTGCCCCATTTGCCGCGCCCATTGGACCCAGCTGCCCCGCAATCTGAACCCACCTTGGGGTTCCCTGTCTTCTTGCAACCGAGCTGACCCTATCTTCCAAATCCTGGATGACTCTATTGCCACTTTCCGCATCCACAGGCGCTCATTCTTGCGCTCTGCTCACTATGATGATGACGACCCAATTGAGCCTGACCACGTCTCTAGTTTCCCCCGTCTCCAATTCTGTTTGATACCCATCCCACATAGTGCACCCCCTAGTTTGTTTACTCCATATTCATATCATCCGCCCCCACATCACCTAAGCTGTAGCTCCTCATCATTGTTACAATCACCAACCAGGCCAAAGTCTTATACTATGTGTGCCTTCTCAGACAGAGCATACCTTTCTGTGAAATTAGCCAACCAACGAGCAACAGACTTGGTGTTGGTTGCTAGCCCCAATGGACCGCACTTGAGGCTTCTCAAGCAGTGCATGGCATTGGTGGTTTTTTCCCTTAGACCAATTGATCGTTTGGCCATTGTTACCTACTCATCAGCTGCTGCTCGCGTCTTCCCTTTGAGACGCATGACATCTTATGGAAAGCGAACAGCCCAACAGGTTATTGATCGTCTGTTCTACATGGGGCAAGCAGATCCCGTGGAAGGGATCAAGAAGGGGATAAAGATACTTGAAGATCGTGCATACAAGAACCCAGAGTGTGGCATCCTGCATCTGTCTGACAGCCCAATGCGATCCTACCATGCTGCAATGGACATGGATGTGCCGATTCCAGTCCATCGCTTCCATGTAGGATTTGGATTTGGCACTTCGAATGGATATATCATGCATGAGTTTGAAGATTTGCTAAGAAGAATCCTAGGCGGCATGATTAGAGAAATTGAGTTGAGGATGAGAATAGGGGAGGAGGCCAGCAGAAGCAGTCGGATCGTGAGAATAGGAGAGCTAAGAGGAGGTGAAGAAAAGAAAATCTTAGTGGACTTGGGCGTGTGTGAACATATTTGTGTGGGATATAGCTACATTGAGGAGGGTGATGAGATGACAACAGGGGAAACAGTGGCGAAGGTAGGACTAGGAGATGATGTTGGTAAGAGTAGTAGTAGTAGTAATGCAACGGTTAGAGGAGGACGGGGAGGATTTGCTTGTGGTGCTGCATCAGGGACGAGTGGTGCAATCATCGGCGGGAGGTCTAGTACAAGTACTAGTAGTGTAGAAAGTTGGGACTACCATGACGCTTACATGGCTAGAAGATGGGCCAAGCATTTGCATGCCTACAGGCTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

565

Amino Acids

61.37

Weight (kDa)

9.02

Isoelectric Point (pI)

55.73

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-RING_2 PF13639 93 - 143 1.5e-07 Ring finger domain
zf-rbx1 PF12678 93 - 143 4.2e-07 RING-H2 zinc finger domain
zf-C3HC4 PF00097 94 - 142 1.3e-07 Zinc finger, C3HC4 type (RING finger)
zf-RING_11 PF17123 94 - 128 1.4e-06 RING-like zinc finger
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 283
Acc36I ACCTGC 1 cut(s) 422
AccB7I CCANNNNNTGG 2 cut(s) 517, 1112
AccII CGCG 2 cut(s) 429, 960
AciI CCGC 9 cut(s) 56, 94, 427, 451, 541, 698, 860, 1275, 1593
AclWI GGATC 4 cut(s) 1040, 1067, 1140, 1346
AcoI YGGCCR 1 cut(s) 927
AcuI CTGAAG 1 cut(s) 138
AdeI CACNNNGTG 1 cut(s) 659
AfaI GTAC 2 cut(s) 1606, 1612
AfiI CCNNNNNNNGG 8 cut(s) 316, 334, 469, 470, 517, 1055, 1056, 1112
AgsI TTSAA 3 cut(s) 27, 1085, 1250
AhlI ACTAGT 1 cut(s) 1613
AjiI CACGTC 1 cut(s) 610
AjnI CCWGG 3 cut(s) 328, 516, 749
AluBI AGCT 7 cut(s) 445, 497, 717, 723, 950, 1357, 1428
AluI AGCT 7 cut(s) 445, 497, 717, 723, 950, 1357, 1428
Alw21I GWGCWC 2 cut(s) 359, 664
Alw26I GTCTC 5 cut(s) 115, 168, 616, 632, 967
Alw44I GTGCAC 1 cut(s) 660
AlwI GGATC 4 cut(s) 1040, 1067, 1140, 1346
AlwNI CAGNNNCTG 1 cut(s) 953
AoxI GGCC 5 cut(s) 348, 752, 927, 1320, 1665
ApaLI GTGCAC 1 cut(s) 660
AspA2I CCTAGG 1 cut(s) 1270
AspLEI GCGC 5 cut(s) 20, 284, 431, 555, 567
AspS9I GGNCC 4 cut(s) 349, 438, 857, 1665
AsuHPI GGTGA 4 cut(s) 701, 735, 1379, 1454
AsuII TTCGAA 1 cut(s) 1223
AsuNHI GCTAGC 1 cut(s) 845
AvaII GGWCC 2 cut(s) 438, 857
AvrII CCTAGG 1 cut(s) 1270
BaeGI GKGCMC 1 cut(s) 664
BalI TGGCCA 1 cut(s) 929
BbsI GAAGAC 2 cut(s) 474, 955
Bbv12I GWGCWC 2 cut(s) 359, 664
BccI CCATC 4 cut(s) 113, 656, 1197, 1656
BceAI ACGGC 2 cut(s) 143, 363
BcgI CGANNNNNNTGC 2 cut(s) 1321, 1355
BciT130I CCWGG 3 cut(s) 330, 518, 751
BcoDI GTCTC 5 cut(s) 115, 168, 616, 632, 967
BcuI ACTAGT 1 cut(s) 1613
BfaI CTAG 9 cut(s) 293, 615, 669, 846, 1271, 1484, 1602, 1614, 1656
BfmI CTRYAG 2 cut(s) 718, 1684
BfoI RGCGCY 1 cut(s) 556
BfuAI ACCTGC 1 cut(s) 422
BlnI CCTAGG 1 cut(s) 1270
BmcAI AGTACT 1 cut(s) 1612
Bme1390I CCNGG 3 cut(s) 330, 518, 751
Bme18I GGWCC 2 cut(s) 438, 857
BmgBI CACGTC 1 cut(s) 610
BmgT120I GGNCC 4 cut(s) 349, 438, 857, 1665
BmiI GGNNCC 3 cut(s) 85, 440, 475
BmrFI CCNGG 3 cut(s) 330, 518, 751
BmrI ACTGGG 1 cut(s) 346
BmsI GCATC 6 cut(s) 29, 390, 552, 1125, 1132, 1574
BmtI GCTAGC 1 cut(s) 849
BmuI ACTGGG 1 cut(s) 346
BoxI GACNNNNGTC 1 cut(s) 107
BpiI GAAGAC 2 cut(s) 474, 955
Bpu10I CCTNAGC 1 cut(s) 713
Bpu14I TTCGAA 1 cut(s) 1223
BpuEI CTTGAG 2 cut(s) 860, 886
BsaBI GATNNNNATC 1 cut(s) 647
BsaJI CCNNGG 6 cut(s) 328, 329, 400, 467, 1050, 1270
BsaXI ACNNNNNCTCC 6 cut(s) 118, 148, 1479, 1509, 1588, 1618
Bsc4I CCNNNNNNNGG 8 cut(s) 316, 334, 469, 470, 517, 1055, 1056, 1112
Bse1I ACTGG 2 cut(s) 352, 1184
Bse3DI GCAATG 2 cut(s) 262, 1167
Bse8I GATNNNNATC 1 cut(s) 647
BseBI CCWGG 3 cut(s) 330, 518, 751
BseDI CCNNGG 6 cut(s) 328, 329, 400, 467, 1050, 1270
BseGI GGATG 7 cut(s) 526, 543, 648, 694, 1116, 1177, 1308
BseJI GATNNNNATC 1 cut(s) 647
BseLI CCNNNNNNNGG 8 cut(s) 316, 334, 469, 470, 517, 1055, 1056, 1112
BseMI GCAATG 2 cut(s) 262, 1167
BseMII CTCAG 4 cut(s) 23, 159, 293, 795
BseNI ACTGG 2 cut(s) 352, 1184
BseRI GAGGAG 9 cut(s) 21, 24, 27, 376, 715, 1331, 1377, 1451, 1548
BseSI GKGCMC 1 cut(s) 664
BseYI CCCAGC 1 cut(s) 441
Bsh1236I CGCG 2 cut(s) 429, 960
BshFI GGCC 5 cut(s) 350, 754, 929, 1322, 1667
BsiHKAI GWGCWC 2 cut(s) 359, 664
BslFI GGGAC 2 cut(s) 1585, 1646
BslI CCNNNNNNNGG 8 cut(s) 316, 334, 469, 470, 517, 1055, 1056, 1112
BsmAI GTCTC 5 cut(s) 115, 168, 616, 632, 967
BsmBI CGTCTC 4 cut(s) 115, 616, 632, 967
BsmFI GGGAC 2 cut(s) 1585, 1646
BsnI GGCC 5 cut(s) 350, 754, 929, 1322, 1667
Bsp119I TTCGAA 1 cut(s) 1223
Bsp1286I GDGCHC 2 cut(s) 359, 664
Bsp143I GATC 8 cut(s) 115, 919, 1018, 1045, 1059, 1087, 1145, 1338
Bsp19I CCATGG 1 cut(s) 400
BspACI CCGC 9 cut(s) 56, 94, 427, 451, 541, 698, 860, 1275, 1593
BspANI GGCC 5 cut(s) 350, 754, 929, 1322, 1667
BspCNI CTCAG 4 cut(s) 24, 158, 294, 794
BspFNI CGCG 2 cut(s) 429, 960
BspLI GGNNCC 3 cut(s) 85, 440, 475
BspMI ACCTGC 1 cut(s) 422
BspOI GCTAGC 1 cut(s) 849
BspPI GGATC 4 cut(s) 1040, 1067, 1140, 1346
BspT104I TTCGAA 1 cut(s) 1223
BsrDI GCAATG 2 cut(s) 262, 1167
BsrI ACTGG 2 cut(s) 352, 1184
BssECI CCNNGG 6 cut(s) 328, 329, 400, 467, 1050, 1270
BssMI GATC 8 cut(s) 115, 919, 1018, 1045, 1059, 1087, 1145, 1338
BssT1I CCWWGG 3 cut(s) 400, 467, 1270
Bst2UI CCWGG 3 cut(s) 330, 518, 751
Bst4CI ACNGT 2 cut(s) 1468, 1528
BstBI TTCGAA 1 cut(s) 1223
BstC8I GCNNGC 6 cut(s) 336, 847, 958, 1041, 1324, 1680
BstDSI CCRYGG 2 cut(s) 400, 1050
BstF5I GGATG 7 cut(s) 526, 543, 648, 694, 1116, 1177, 1308
BstFNI CGCG 2 cut(s) 429, 960
BstH2I RGCGCY 1 cut(s) 556
BstHHI GCGC 5 cut(s) 20, 284, 431, 555, 567
BstKTI GATC 8 cut(s) 118, 922, 1021, 1048, 1062, 1090, 1148, 1341
BstMAI GTCTC 5 cut(s) 115, 168, 616, 632, 967
BstMBI GATC 8 cut(s) 115, 919, 1018, 1045, 1059, 1087, 1145, 1338
BstMWI GCNNNNNNNGC 9 cut(s) 62, 71, 200, 321, 423, 868, 877, 1559, 1652
BstNI CCWGG 3 cut(s) 330, 518, 751
BstNSI RCATGY 2 cut(s) 78, 1682
BstPAI GACNNNNGTC 1 cut(s) 107
BstSCI CCNGG 3 cut(s) 328, 516, 749
BstSFI CTRYAG 2 cut(s) 718, 1684
BstSLI GKGCMC 1 cut(s) 664
BstUI CGCG 2 cut(s) 429, 960
BstV2I GAAGAC 2 cut(s) 474, 955
BstX2I RGATCY 1 cut(s) 1045
BstYI RGATCY 1 cut(s) 1045
BsuRI GGCC 5 cut(s) 350, 754, 929, 1322, 1667
BtgI CCRYGG 2 cut(s) 400, 1050
BtgZI GCGATG 1 cut(s) 1175
BtrI CACGTC 1 cut(s) 610
BtsCI GGATG 7 cut(s) 526, 543, 648, 694, 1116, 1177, 1308
BtsI GCAGTG 1 cut(s) 887
BtsIMutI CAGTG 3 cut(s) 359, 887, 1473
BveI ACCTGC 1 cut(s) 422
Cac8I GCNNGC 6 cut(s) 336, 847, 958, 1041, 1324, 1680
CaiI CAGNNNCTG 1 cut(s) 953
CfoI GCGC 5 cut(s) 20, 284, 431, 555, 567
Cfr13I GGNCC 4 cut(s) 349, 438, 857, 1665
CseI GACGC 3 cut(s) 949, 984, 1652
Csp6I GTAC 2 cut(s) 1605, 1611
CviQI GTAC 2 cut(s) 1605, 1611
DpnI GATC 8 cut(s) 117, 921, 1020, 1047, 1061, 1089, 1147, 1340
DpnII GATC 8 cut(s) 115, 919, 1018, 1045, 1059, 1087, 1145, 1338
DraIII CACNNNGTG 1 cut(s) 659
EaeI YGGCCR 1 cut(s) 927
EciI GGCGGA 1 cut(s) 687
Eco130I CCWWGG 3 cut(s) 400, 467, 1270
Eco47I GGWCC 2 cut(s) 438, 857
Eco57I CTGAAG 1 cut(s) 138
EcoRII CCWGG 3 cut(s) 328, 516, 749
EcoT14I CCWWGG 3 cut(s) 400, 467, 1270
EcoT22I ATGCAT 2 cut(s) 76, 1242
ErhI CCWWGG 3 cut(s) 400, 467, 1270
Esp3I CGTCTC 4 cut(s) 115, 616, 632, 967
FalI AAGNNNNNCTT 2 cut(s) 1367, 1399
FaqI GGGAC 2 cut(s) 1585, 1646
FauI CCCGC 3 cut(s) 101, 458, 1586
FokI GGATG 7 cut(s) 530, 533, 635, 681, 1103, 1184, 1315
FspBI CTAG 9 cut(s) 293, 615, 669, 846, 1271, 1484, 1602, 1614, 1656
FspI TGCGCA 1 cut(s) 283
GlaI GCGC 5 cut(s) 19, 283, 430, 554, 566
GsaI CCCAGC 1 cut(s) 445
HaeII RGCGCY 1 cut(s) 556
HaeIII GGCC 5 cut(s) 350, 754, 929, 1322, 1667
HgaI GACGC 3 cut(s) 949, 984, 1652
HhaI GCGC 5 cut(s) 20, 284, 431, 555, 567
Hin6I GCGC 5 cut(s) 18, 282, 429, 553, 565
HinP1I GCGC 5 cut(s) 18, 282, 429, 553, 565
HinfI GANTC 3 cut(s) 524, 1180, 1266
HphI GGTGA 4 cut(s) 701, 735, 1379, 1454
Hpy166II GTNNAC 4 cut(s) 662, 678, 1390, 1406
Hpy188I TCNGA 6 cut(s) 115, 303, 459, 784, 1132, 1338
Hpy188III TCNNGA 3 cut(s) 293, 1063, 1342
Hpy8I GTNNAC 4 cut(s) 662, 678, 1390, 1406
HpyAV CCTTC 7 cut(s) 97, 212, 273, 787, 1049, 1060, 1468
HpyCH4III ACNGT 2 cut(s) 1468, 1528
HpyCH4IV ACGT 1 cut(s) 609
HpyF10VI GCNNNNNNNGC 9 cut(s) 62, 71, 200, 321, 423, 868, 877, 1559, 1652
HpySE526I ACGT 1 cut(s) 609
HspAI GCGC 5 cut(s) 18, 282, 429, 553, 565
Kzo9I GATC 8 cut(s) 115, 919, 1018, 1045, 1059, 1087, 1145, 1338
LmnI GCTCC 3 cut(s) 321, 362, 728
LweI GCATC 6 cut(s) 29, 390, 552, 1125, 1132, 1574
MaeI CTAG 9 cut(s) 293, 615, 669, 846, 1271, 1484, 1602, 1614, 1656
MaeII ACGT 1 cut(s) 609
MaeIII GTNAC 4 cut(s) 305, 409, 735, 934
MalI GATC 8 cut(s) 117, 921, 1020, 1047, 1061, 1089, 1147, 1340
MboI GATC 8 cut(s) 115, 919, 1018, 1045, 1059, 1087, 1145, 1338
MfeI CAATTG 2 cut(s) 594, 915
MflI RGATCY 1 cut(s) 1045
MhlI GDGCHC 2 cut(s) 359, 664
MlsI TGGCCA 1 cut(s) 929
MluCI AATT 6 cut(s) 247, 594, 632, 806, 915, 1290
MluNI TGGCCA 1 cut(s) 929
MlyI GAGTC 1 cut(s) 518
MmeI TCCRAC 3 cut(s) 191, 211, 1316
Mox20I TGGCCA 1 cut(s) 929
Mph1103I ATGCAT 2 cut(s) 76, 1242
MscI TGGCCA 1 cut(s) 929
MslI CAYNNNNRTG 5 cut(s) 405, 579, 1172, 1413, 1677
Msp20I TGGCCA 1 cut(s) 929
MspA1I CMGCKG 2 cut(s) 445, 950
MspR9I CCNGG 3 cut(s) 330, 518, 751
MunI CAATTG 2 cut(s) 594, 915
MvaI CCWGG 3 cut(s) 330, 518, 751
MvnI CGCG 2 cut(s) 429, 960
MwoI GCNNNNNNNGC 9 cut(s) 62, 71, 200, 321, 423, 868, 877, 1559, 1652
NcoI CCATGG 1 cut(s) 400
NdeII GATC 8 cut(s) 115, 919, 1018, 1045, 1059, 1087, 1145, 1338
NheI GCTAGC 1 cut(s) 845
NlaIV GGNNCC 3 cut(s) 85, 440, 475
NsbI TGCGCA 1 cut(s) 283
NsiI ATGCAT 2 cut(s) 76, 1242
NspI RCATGY 2 cut(s) 78, 1682
NspV TTCGAA 1 cut(s) 1223
PaeI GCATGC 1 cut(s) 1682
PasI CCCWGGG 1 cut(s) 329
PfeI GAWTC 2 cut(s) 1180, 1266
PflFI GACNNNGTC 1 cut(s) 608
PflMI CCANNNNNTGG 2 cut(s) 517, 1112
PfoI TCCNGGA 1 cut(s) 516
PleI GAGTC 1 cut(s) 518
PpsI GAGTC 1 cut(s) 518
PshAI GACNNNNGTC 1 cut(s) 107
Psp6I CCWGG 3 cut(s) 328, 516, 749
PspFI CCCAGC 1 cut(s) 441
PspGI CCWGG 3 cut(s) 328, 516, 749
PspN4I GGNNCC 3 cut(s) 85, 440, 475
PspPI GGNCC 4 cut(s) 349, 438, 857, 1665
PstNI CAGNNNCTG 1 cut(s) 953
PsuI RGATCY 1 cut(s) 1045
PsyI GACNNNGTC 1 cut(s) 608
PvuII CAGCTG 2 cut(s) 445, 950
RsaI GTAC 2 cut(s) 1606, 1612
RsaNI GTAC 2 cut(s) 1605, 1611
RseI CAYNNNNRTG 5 cut(s) 405, 579, 1172, 1413, 1677
Sau3AI GATC 8 cut(s) 115, 919, 1018, 1045, 1059, 1087, 1145, 1338
Sau96I GGNCC 4 cut(s) 349, 438, 857, 1665
ScaI AGTACT 1 cut(s) 1612
SchI GAGTC 1 cut(s) 518
ScrFI CCNGG 3 cut(s) 330, 518, 751
SduI GDGCHC 2 cut(s) 359, 664
SfaNI GCATC 6 cut(s) 29, 390, 552, 1125, 1132, 1574
SfcI CTRYAG 2 cut(s) 718, 1684
SfuI TTCGAA 1 cut(s) 1223
SinI GGWCC 2 cut(s) 438, 857
SmiMI CAYNNNNRTG 5 cut(s) 405, 579, 1172, 1413, 1677
SmlI CTYRAG 2 cut(s) 865, 875
SmoI CTYRAG 2 cut(s) 865, 875
SpeI ACTAGT 1 cut(s) 1613
SphI GCATGC 1 cut(s) 1682
Sse9I AATT 6 cut(s) 247, 594, 632, 806, 915, 1290
SsiI CCGC 9 cut(s) 56, 94, 427, 451, 541, 698, 860, 1275, 1593
SspMI CTAG 9 cut(s) 293, 615, 669, 846, 1271, 1484, 1602, 1614, 1656
StyD4I CCNGG 3 cut(s) 328, 516, 749
StyI CCWWGG 3 cut(s) 400, 467, 1270
TaaI ACNGT 2 cut(s) 1468, 1528
TaiI ACGT 1 cut(s) 612
TaqI TCGA 1 cut(s) 1223
TasI AATT 6 cut(s) 247, 594, 632, 806, 915, 1290
TatI WGTACW 2 cut(s) 1604, 1610
TauI GCSGC 2 cut(s) 429, 1278
TfiI GAWTC 2 cut(s) 1180, 1266
TscAI CASTG 3 cut(s) 359, 887, 1473
TspDTI ATGAA 1 cut(s) 678
TspGWI ACGGA 1 cut(s) 248
TspRI CASTG 3 cut(s) 359, 887, 1473
Tth111I GACNNNGTC 1 cut(s) 608
Van91I CCANNNNNTGG 2 cut(s) 517, 1112
VneI GTGCAC 1 cut(s) 660
VpaK11BI GGWCC 2 cut(s) 438, 857
XbaI TCTAGA 1 cut(s) 292
XceI RCATGY 2 cut(s) 78, 1682
XcmI CCANNNNNNNNNTGG 1 cut(s) 1205
XmaJI CCTAGG 1 cut(s) 1270
XspI CTAG 9 cut(s) 293, 615, 669, 846, 1271, 1484, 1602, 1614, 1656
ZrmI AGTACT 1 cut(s) 1612
Zsp2I ATGCAT 2 cut(s) 76, 1242
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.