Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp04

Orthogroup ID

OG0013811

Physical Location & Seq

Genomic Coordinates Forward (+)

2089862 .. 2092387

Gene Structure 2526 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.4G043600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1020 bp

ATGGCTTCGTTCGACGCGTTCAGCATTGACGGCGACGATCTCAACGCTTCCAGCAGTCACTTTGACCAAGACGACGTCGTCGTCGAAAACTACACCGACTACGCCGAGTACTCCAGCTTCTCCGGCGGAGCTCCGACTGACGCCGAAGTTACCGCTGACCACGCCGCCGGTGCCTCAACGGATGTTTTCGGATTCGACGATCCGAGCTCCAACTACTCCCACTCGACCCCGTTCGATTCGGTTCCCGTTGAGAACGGTAATGGAAATGGATATGGTGTGGGCGAGCACGCAATCGACGATGACGTTTTCACATCGGACGGTCCCGTGCTACCTCCACCGAGCGAGATGGTGCCTGAGGAAGGTTTTGCTCTTCGTGAATGGCGGCGTCTAAATGCCCTCCAGCTTGAGGAGAAGGAGAAGAGGGAGAAAGAACTAAGGAACCAGATTATTGAAGAAGCTGAGGAGTACAAACGTGCATTCTATGAGAAAAGGAAGCTTAATGTTGAGACCAACAAGGTTGAGAACAGAGAAAAGGAGAAGTTATTCTTGGCCAATCAAGAGAATTTCCATAAAAACGCTGACAAGCAAAGTTGGAAAGCAATAGCAGAGCTCATTCCTCATGAGGTTCCCAACATTGAGAAGAAGAGAGGCAAGAAGGATCAGGACAAGAAACCATCGATCACAGTCGTTCAGGGCCCGAAGCCTGGAAAACCCACTGATCTTTCAAGGCTGCGGCAAATACTTTTGAAGCTGAAGCATAAAACTCCACCTCATATGATTCCACCCCCACCTGCACCTGCTAAAGATGCCAAAGATGCCAAAGATGGAAAGGCTCCAGCTAAAGATCCCAAAGATGGGAAGGATGCCAAAAATGCCCAGAATGTAAAGGATGCAGCATCTAAAACTAATGGGTCCTCAGAAGCCGAGGTGCCTGCTTCACAAGCCAAGGATGCCACCTCTAACGGTTCTTCGGATGCACCCGAACAAAGCACTCCTTCTATCGAGGACCTCTCTGCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005198 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005886 GO:0006810 GO:0006897 GO:0006898 GO:0008150 GO:0012506 GO:0016020 GO:0016192 GO:0030117 GO:0030118 GO:0030120 GO:0030125 GO:0030135 GO:0030136 GO:0030276 GO:0030659 GO:0030662 GO:0030665 GO:0031090 GO:0031410 GO:0031982 GO:0032050 GO:0032991 GO:0043226 GO:0043227 GO:0043229 GO:0044422 GO:0044424 GO:0044425 GO:0044433 GO:0044444 GO:0044446 GO:0044464 GO:0048475 GO:0051179 GO:0051234 GO:0071944 GO:0072583 GO:0097708 GO:0098588 GO:0098657 GO:0098796 GO:0098805

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Clathrin_lg_ch

Protein Analysis

340

Amino Acids

37.11

Weight (kDa)

4.97

Isoelectric Point (pI)

50.48

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013811)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g04840
malus_domestica	MD05G1316400.v1.1 MD10G1296900.v1.1
prunus_persica	Prupe.4G043600_v2.0.a1
pyrus_communis	pycom10g24980
rosa_chinensis	RchiOBHm_Chr5g0008001
rosa_laevigata	RLG00000031526
rosa_multiflora	Rmu_co8429453.1_g000001 Rmu_co8446221.1_g000001 Rmu_sc0007348.1_g000005
rosa_roxburghii	Rroxscaffold_1G00068470
rosa_rugosa	Rorug04G0432300
rosa_samantha	Rh5AG060500 Rh5BG057300 Rh5CG067400 Rh5DG056500
rosa_wichuraiana	Rw5G006010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	2 cut(s)	799, 805
AasI	GACNNNNNNGTC	2 cut(s)	77, 80
AatII	GACGTC	1 cut(s)	78
Acc36I	ACCTGC	2 cut(s)	799, 805
AccB1I	GGYRCC	3 cut(s)	170, 349, 928
AccII	CGCG	1 cut(s)	17
AciI	CCGC	5 cut(s)	126, 153, 165, 382, 733
AclWI	GGATC	3 cut(s)	194, 666, 839
AcoI	YGGCCR	1 cut(s)	549
AcsI	RAATTY	1 cut(s)	562
AcuI	CTGAAG	1 cut(s)	773
AcyI	GRCGYC	3 cut(s)	75, 141, 385
AfaI	GTAC	2 cut(s)	110, 467
AfiI	CCNNNNNNNGG	5 cut(s)	359, 406, 704, 854, 855
AflIII	ACRYGT	1 cut(s)	15
AgsI	TTSAA	3 cut(s)	452, 726, 748
AjnI	CCWGG	1 cut(s)	703
AjuI	GAANNNNNNNTTGG	2 cut(s)	530, 562
AluBI	AGCT	9 cut(s)	117, 131, 207, 403, 458, 496, 610, 751, 839
AluI	AGCT	9 cut(s)	117, 131, 207, 403, 458, 496, 610, 751, 839
Alw21I	GWGCWC	4 cut(s)	133, 209, 288, 612
Alw26I	GTCTC	1 cut(s)	500
AlwI	GGATC	3 cut(s)	194, 666, 839
AoxI	GGCC	2 cut(s)	549, 694
ApaI	GGGCCC	1 cut(s)	698
ApeKI	GCWGC	2 cut(s)	730, 893
ApoI	RAATTY	1 cut(s)	562
Asp700I	GAANNNNTTC	1 cut(s)	542
AspS9I	GGNCC	5 cut(s)	320, 694, 695, 912, 1006
AvaII	GGWCC	3 cut(s)	320, 912, 1006
AxyI	CCTNAGG	1 cut(s)	354
BaeGI	GKGCMC	1 cut(s)	698
BalI	TGGCCA	1 cut(s)	551
BanI	GGYRCC	3 cut(s)	170, 349, 928
BanII	GRGCYC	4 cut(s)	133, 209, 612, 698
BarI	GAAGNNNNNNTAC	2 cut(s)	101, 133
Bbv12I	GWGCWC	4 cut(s)	133, 209, 288, 612
BbvCI	CCTCAGC	1 cut(s)	459
BbvI	GCAGC	2 cut(s)	717, 905
BccI	CCATC	4 cut(s)	340, 682, 818, 848
BceAI	ACGGC	1 cut(s)	46
BcgI	CGANNNNNNTGC	2 cut(s)	914, 948
BciT130I	CCWGG	1 cut(s)	705
BcoDI	GTCTC	1 cut(s)	500
BfuAI	ACCTGC	2 cut(s)	799, 805
BisI	GCNGC	5 cut(s)	165, 383, 731, 734, 894
BlsI	GCNGC	5 cut(s)	166, 384, 732, 735, 895
BmcAI	AGTACT	1 cut(s)	110
Bme1390I	CCNGG	1 cut(s)	705
Bme18I	GGWCC	3 cut(s)	320, 912, 1006
BmgT120I	GGNCC	5 cut(s)	320, 694, 695, 912, 1006
BmrFI	CCNGG	1 cut(s)	705
BmsI	GCATC	7 cut(s)	796, 805, 853, 880, 905, 940, 964
BplI	GAGNNNNNCTC	1 cut(s)	995
BpmI	CTGGAG	3 cut(s)	97, 383, 819
Bpu10I	CCTNAGC	1 cut(s)	459
BpuEI	CTTGAG	1 cut(s)	425
Bsa29I	ATCGAT	1 cut(s)	677
BsaHI	GRCGYC	3 cut(s)	75, 141, 385
BsaI	GGTCTC	1 cut(s)	500
BsaJI	CCNNGG	2 cut(s)	924, 945
Bsc4I	CCNNNNNNNGG	5 cut(s)	359, 406, 704, 854, 855
Bse118I	RCCGGY	1 cut(s)	167
Bse21I	CCTNAGG	1 cut(s)	354
BseBI	CCWGG	1 cut(s)	705
BseCI	ATCGAT	1 cut(s)	677
BseDI	CCNNGG	2 cut(s)	924, 945
BseGI	GGATG	5 cut(s)	187, 868, 895, 955, 979
BseLI	CCNNNNNNNGG	5 cut(s)	359, 406, 704, 854, 855
BseMII	CTCAG	3 cut(s)	345, 450, 930
BseRI	GAGGAG	2 cut(s)	422, 476
BseSI	GKGCMC	1 cut(s)	698
BseXI	GCAGC	2 cut(s)	717, 905
BsgI	GTGCAG	1 cut(s)	777
Bsh1236I	CGCG	1 cut(s)	17
BshFI	GGCC	2 cut(s)	551, 696
BshNI	GGYRCC	3 cut(s)	170, 349, 928
BshVI	ATCGAT	1 cut(s)	677
BsiHKAI	GWGCWC	4 cut(s)	133, 209, 288, 612
BsiSI	CCGG	2 cut(s)	123, 168
BslFI	GGGAC	1 cut(s)	306
BslI	CCNNNNNNNGG	5 cut(s)	359, 406, 704, 854, 855
BsmAI	GTCTC	1 cut(s)	500
BsmFI	GGGAC	1 cut(s)	306
BsmI	GAATGC	1 cut(s)	476
BsnI	GGCC	2 cut(s)	551, 696
Bso31I	GGTCTC	1 cut(s)	500
Bsp120I	GGGCCC	1 cut(s)	694
Bsp1286I	GDGCHC	5 cut(s)	133, 209, 288, 612, 698
Bsp143I	GATC	6 cut(s)	37, 199, 658, 678, 718, 844
BspACI	CCGC	5 cut(s)	126, 153, 165, 382, 733
BspANI	GGCC	2 cut(s)	551, 696
BspCNI	CTCAG	3 cut(s)	346, 451, 929
BspDI	ATCGAT	1 cut(s)	677
BspFNI	CGCG	1 cut(s)	17
BspHI	TCATGA	1 cut(s)	619
BspMI	ACCTGC	2 cut(s)	799, 805
BspPI	GGATC	3 cut(s)	194, 666, 839
BspQI	GCTCTTC	1 cut(s)	375
BspT107I	GGYRCC	3 cut(s)	170, 349, 928
BspTNI	GGTCTC	1 cut(s)	500
BsrFI	RCCGGY	1 cut(s)	167
BssAI	RCCGGY	1 cut(s)	167
BssECI	CCNNGG	2 cut(s)	924, 945
BssMI	GATC	6 cut(s)	37, 199, 658, 678, 718, 844
BssNI	GRCGYC	3 cut(s)	75, 141, 385
BssT1I	CCWWGG	1 cut(s)	945
Bst2UI	CCWGG	1 cut(s)	705
Bst4CI	ACNGT	4 cut(s)	257, 320, 685, 965
Bst6I	CTCTTC	3 cut(s)	375, 413, 638
BstACI	GRCGYC	3 cut(s)	75, 141, 385
BstC8I	GCNNGC	3 cut(s)	284, 288, 933
BstDEI	CTNAG	4 cut(s)	354, 434, 459, 916
BstENI	CCTNNNNNAGG	1 cut(s)	357
BstF5I	GGATG	5 cut(s)	187, 868, 895, 955, 979
BstFNI	CGCG	1 cut(s)	17
BstKTI	GATC	6 cut(s)	40, 202, 661, 681, 721, 847
BstMAI	GTCTC	1 cut(s)	500
BstMBI	GATC	6 cut(s)	37, 199, 658, 678, 718, 844
BstMWI	GCNNNNNNNGC	9 cut(s)	30, 123, 161, 170, 806, 815, 872, 941, 950
BstNI	CCWGG	1 cut(s)	705
BstSCI	CCNGG	1 cut(s)	703
BstSLI	GKGCMC	1 cut(s)	698
BstUI	CGCG	1 cut(s)	17
BstV1I	GCAGC	2 cut(s)	717, 905
BstX2I	RGATCY	1 cut(s)	844
BstYI	RGATCY	1 cut(s)	844
Bsu15I	ATCGAT	1 cut(s)	677
Bsu36I	CCTNAGG	1 cut(s)	354
BsuRI	GGCC	2 cut(s)	551, 696
BsuTUI	ATCGAT	1 cut(s)	677
BtsCI	GGATG	5 cut(s)	187, 868, 895, 955, 979
BtsIMutI	CAGTG	1 cut(s)	714
BveI	ACCTGC	2 cut(s)	799, 805
Cac8I	GCNNGC	3 cut(s)	284, 288, 933
CciI	TCATGA	1 cut(s)	619
Cfr10I	RCCGGY	1 cut(s)	167
Cfr13I	GGNCC	5 cut(s)	320, 694, 695, 912, 1006
ClaI	ATCGAT	1 cut(s)	677
CseI	GACGC	3 cut(s)	23, 149, 374
Csp6I	GTAC	2 cut(s)	109, 466
CviAII	CATG	1 cut(s)	620
CviQI	GTAC	2 cut(s)	109, 466
DdeI	CTNAG	4 cut(s)	354, 434, 459, 916
DpnI	GATC	6 cut(s)	39, 201, 660, 680, 720, 846
DpnII	GATC	6 cut(s)	37, 199, 658, 678, 718, 844
DrdI	GACNNNNNNGTC	2 cut(s)	77, 80
DseDI	GACNNNNNNGTC	2 cut(s)	77, 80
EaeI	YGGCCR	1 cut(s)	549
Eam1104I	CTCTTC	3 cut(s)	375, 413, 638
EarI	CTCTTC	3 cut(s)	375, 413, 638
EciI	GGCGGA	1 cut(s)	141
Ecl136II	GAGCTC	3 cut(s)	131, 207, 610
Eco130I	CCWWGG	1 cut(s)	945
Eco24I	GRGCYC	4 cut(s)	133, 209, 612, 698
Eco31I	GGTCTC	1 cut(s)	500
Eco47I	GGWCC	3 cut(s)	320, 912, 1006
Eco53kI	GAGCTC	3 cut(s)	131, 207, 610
Eco57I	CTGAAG	1 cut(s)	773
Eco81I	CCTNAGG	1 cut(s)	354
EcoICRI	GAGCTC	3 cut(s)	131, 207, 610
EcoNI	CCTNNNNNAGG	1 cut(s)	357
EcoO109I	RGGNCCY	3 cut(s)	694, 912, 1006
EcoRII	CCWGG	1 cut(s)	703
EcoT14I	CCWWGG	1 cut(s)	945
EcoT38I	GRGCYC	4 cut(s)	133, 209, 612, 698
ErhI	CCWWGG	1 cut(s)	945
FaeI	CATG	1 cut(s)	623
FaiI	YATR	7 cut(s)	273, 483, 570, 621, 759, 774, 776
FalI	AAGNNNNNCTT	4 cut(s)	530, 562, 979, 1011
FaqI	GGGAC	1 cut(s)	306
FatI	CATG	1 cut(s)	619
FauNDI	CATATG	1 cut(s)	774
Fnu4HI	GCNGC	5 cut(s)	165, 383, 731, 734, 894
FokI	GGATG	5 cut(s)	194, 875, 902, 962, 986
FriOI	GRGCYC	4 cut(s)	133, 209, 612, 698
Fsp4HI	GCNGC	5 cut(s)	165, 383, 731, 734, 894
GluI	GCNGC	5 cut(s)	165, 383, 731, 734, 894
GsuI	CTGGAG	3 cut(s)	97, 383, 819
HaeIII	GGCC	2 cut(s)	551, 696
HapII	CCGG	2 cut(s)	123, 168
HgaI	GACGC	3 cut(s)	23, 149, 374
Hin1I	GRCGYC	3 cut(s)	75, 141, 385
Hin1II	CATG	1 cut(s)	623
HindIII	AAGCTT	1 cut(s)	494
HinfI	GANTC	3 cut(s)	192, 236, 778
HpaII	CCGG	2 cut(s)	123, 168
Hpy188I	TCNGA	6 cut(s)	135, 191, 204, 316, 919, 973
Hpy188III	TCNNGA	4 cut(s)	374, 557, 620, 662
Hpy99I	CGWCG	8 cut(s)	17, 38, 77, 80, 83, 86, 200, 299
HpyAV	CCTTC	5 cut(s)	353, 406, 649, 853, 1005
HpyCH4III	ACNGT	4 cut(s)	257, 320, 685, 965
HpyCH4IV	ACGT	3 cut(s)	75, 303, 472
HpyCH4V	TGCA	4 cut(s)	476, 794, 893, 977
HpyF10VI	GCNNNNNNNGC	9 cut(s)	30, 123, 161, 170, 806, 815, 872, 941, 950
HpyF3I	CTNAG	4 cut(s)	354, 434, 459, 916
HpySE526I	ACGT	3 cut(s)	75, 303, 472
Hsp92I	GRCGYC	3 cut(s)	75, 141, 385
Hsp92II	CATG	1 cut(s)	623
Kzo9I	GATC	6 cut(s)	37, 199, 658, 678, 718, 844
LguI	GCTCTTC	1 cut(s)	375
LmnI	GCTCC	4 cut(s)	128, 136, 212, 838
Lsp1109I	GCAGC	2 cut(s)	717, 905
LweI	GCATC	7 cut(s)	796, 805, 853, 880, 905, 940, 964
MaeII	ACGT	3 cut(s)	75, 303, 472
MaeIII	GTNAC	2 cut(s)	56, 148
MalI	GATC	6 cut(s)	39, 201, 660, 680, 720, 846
MboI	GATC	6 cut(s)	37, 199, 658, 678, 718, 844
MboII	GAAGA	6 cut(s)	362, 430, 464, 652, 655, 960
MflI	RGATCY	1 cut(s)	844
MhlI	GDGCHC	5 cut(s)	133, 209, 288, 612, 698
MlsI	TGGCCA	1 cut(s)	551
MluCI	AATT	1 cut(s)	562
MluI	ACGCGT	1 cut(s)	15
MluNI	TGGCCA	1 cut(s)	551
MmeI	TCCRAC	3 cut(s)	158, 234, 572
Mox20I	TGGCCA	1 cut(s)	551
MroXI	GAANNNNTTC	1 cut(s)	542
MscI	TGGCCA	1 cut(s)	551
MseI	TTAA	2 cut(s)	498, 1018
Msp20I	TGGCCA	1 cut(s)	551
MspA1I	CMGCKG	1 cut(s)	155
MspI	CCGG	2 cut(s)	123, 168
MspR9I	CCNGG	1 cut(s)	705
Mva1269I	GAATGC	1 cut(s)	476
MvaI	CCWGG	1 cut(s)	705
MvnI	CGCG	1 cut(s)	17
MwoI	GCNNNNNNNGC	9 cut(s)	30, 123, 161, 170, 806, 815, 872, 941, 950
NdeI	CATATG	1 cut(s)	774
NdeII	GATC	6 cut(s)	37, 199, 658, 678, 718, 844
NlaIII	CATG	1 cut(s)	623
NmeAIII	GCCGAG	2 cut(s)	130, 949
NmuCI	GTSAC	1 cut(s)	56
PagI	TCATGA	1 cut(s)	619
PaqCI	CACCTGC	2 cut(s)	799, 805
PciSI	GCTCTTC	1 cut(s)	375
PcsI	WCGNNNNNNNCGW	6 cut(s)	14, 78, 81, 195, 294, 300
PctI	GAATGC	1 cut(s)	476
PdmI	GAANNNNTTC	1 cut(s)	542
PfeI	GAWTC	3 cut(s)	192, 236, 778
PflFI	GACNNNGTC	2 cut(s)	74, 77
PkrI	GCNGC	5 cut(s)	166, 384, 732, 735, 895
PpuMI	RGGWCCY	2 cut(s)	912, 1006
Psp124BI	GAGCTC	3 cut(s)	133, 209, 612
Psp5II	RGGWCCY	2 cut(s)	912, 1006
Psp6I	CCWGG	1 cut(s)	703
PspGI	CCWGG	1 cut(s)	703
PspOMI	GGGCCC	1 cut(s)	694
PspPI	GGNCC	5 cut(s)	320, 694, 695, 912, 1006
PspPPI	RGGWCCY	2 cut(s)	912, 1006
PsuI	RGATCY	1 cut(s)	844
PsyI	GACNNNGTC	2 cut(s)	74, 77
RsaI	GTAC	2 cut(s)	110, 467
RsaNI	GTAC	2 cut(s)	109, 466
SacI	GAGCTC	3 cut(s)	133, 209, 612
SapI	GCTCTTC	1 cut(s)	375
SaqAI	TTAA	2 cut(s)	498, 1018
SatI	GCNGC	5 cut(s)	165, 383, 731, 734, 894
Sau3AI	GATC	6 cut(s)	37, 199, 658, 678, 718, 844
Sau96I	GGNCC	5 cut(s)	320, 694, 695, 912, 1006
ScaI	AGTACT	1 cut(s)	110
ScrFI	CCNGG	1 cut(s)	705
SduI	GDGCHC	5 cut(s)	133, 209, 288, 612, 698
SfaNI	GCATC	7 cut(s)	796, 805, 853, 880, 905, 940, 964
SgrAI	CRCCGGYG	1 cut(s)	167
SinI	GGWCC	3 cut(s)	320, 912, 1006
SmlI	CTYRAG	1 cut(s)	404
SmoI	CTYRAG	1 cut(s)	404
Sse9I	AATT	1 cut(s)	562
SsiI	CCGC	5 cut(s)	126, 153, 165, 382, 733
SstI	GAGCTC	3 cut(s)	133, 209, 612
StyD4I	CCNGG	1 cut(s)	703
StyI	CCWWGG	1 cut(s)	945
TaaI	ACNGT	4 cut(s)	257, 320, 685, 965
TaiI	ACGT	3 cut(s)	78, 306, 475
TaqI	TCGA	8 cut(s)	12, 84, 195, 224, 234, 294, 677, 1002
TasI	AATT	1 cut(s)	562
TatI	WGTACW	2 cut(s)	108, 465
TauI	GCSGC	3 cut(s)	167, 385, 736
TfiI	GAWTC	3 cut(s)	192, 236, 778
Tru1I	TTAA	2 cut(s)	498, 1018
Tru9I	TTAA	2 cut(s)	498, 1018
TscAI	CASTG	1 cut(s)	721
TseFI	GTSAC	1 cut(s)	56
TseI	GCWGC	2 cut(s)	730, 893
Tsp45I	GTSAC	1 cut(s)	56
TspGWI	ACGGA	1 cut(s)	194
TspRI	CASTG	1 cut(s)	721
Tth111I	GACNNNGTC	2 cut(s)	74, 77
VpaK11BI	GGWCC	3 cut(s)	320, 912, 1006
XagI	CCTNNNNNAGG	1 cut(s)	357
XapI	RAATTY	1 cut(s)	562
XmnI	GAANNNNTTC	1 cut(s)	542
ZraI	GACGTC	1 cut(s)	76
ZrmI	AGTACT	1 cut(s)	110

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.