Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8446221.1

Orthogroup ID

OG0013811

Physical Location & Seq

Genomic Coordinates Forward (+)

1025 .. 1393

Gene Structure 369 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8446221.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 369 bp

atggcctcgttcgacgctttcagcatcgacggcgacgatctcaacgcctcatccaaccgtccatttgaccaggacgaggtcgtcgtcgagagctacgactacgcctcctactctgacttctccggcgggcttcccgccgaaggagtgtcgacggatcaggcggcggcctcgccgttcggattcgaagatccgagcccgaactactctggctcgtcgccgttcggggctgctccggctgagaacggtaatggatatggaatcggcgagaatggaatcgacgatggagtttttgcttccgacggtcctgtgctgccggagccgagcgagatgcaggaggaagggtttgctcttcgtgagtggaggaggtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005198 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005886 GO:0006810 GO:0006897 GO:0006898 GO:0008150 GO:0012506 GO:0016020 GO:0016192 GO:0030117 GO:0030118 GO:0030120 GO:0030125 GO:0030135 GO:0030136 GO:0030276 GO:0030659 GO:0030662 GO:0030665 GO:0031090 GO:0031410 GO:0031982 GO:0032050 GO:0032991 GO:0043226 GO:0043227 GO:0043229 GO:0044422 GO:0044424 GO:0044425 GO:0044433 GO:0044444 GO:0044446 GO:0044464 GO:0048475 GO:0051179 GO:0051234 GO:0071944 GO:0072583 GO:0097708 GO:0098588 GO:0098657 GO:0098796 GO:0098805

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Clathrin_lg_ch

Protein Analysis

122

Amino Acids

12.85

Weight (kDa)

4.05

Isoelectric Point (pI)

59.64

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013811)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g04840
malus_domestica	MD05G1316400.v1.1 MD10G1296900.v1.1
prunus_persica	Prupe.4G043600_v2.0.a1
pyrus_communis	pycom10g24980
rosa_chinensis	RchiOBHm_Chr5g0008001
rosa_laevigata	RLG00000031526
rosa_multiflora	Rmu_co8429453.1_g000001 Rmu_co8446221.1_g000001 Rmu_sc0007348.1_g000005
rosa_roxburghii	Rroxscaffold_1G00068470
rosa_rugosa	Rorug04G0432300
rosa_samantha	Rh5AG060500 Rh5BG057300 Rh5CG067400 Rh5DG056500
rosa_wichuraiana	Rw5G006010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	80
AccI	GTMKAC	1 cut(s)	149
AciI	CCGC	4 cut(s)	126, 135, 161, 164
AclWI	GGATC	2 cut(s)	162, 182
AfiI	CCNNNNNNNGG	2 cut(s)	76, 140
AjnI	CCWGG	1 cut(s)	69
AluBI	AGCT	1 cut(s)	93
AluI	AGCT	1 cut(s)	93
AlwI	GGATC	2 cut(s)	162, 182
AoxI	GGCC	2 cut(s)	3, 165
ApeKI	GCWGC	2 cut(s)	227, 310
AspS9I	GGNCC	1 cut(s)	302
AsuII	TTCGAA	1 cut(s)	183
AvaII	GGWCC	1 cut(s)	302
BanII	GRGCYC	1 cut(s)	197
BbvI	GCAGC	2 cut(s)	214, 297
BccI	CCATC	1 cut(s)	275
BceAI	ACGGC	3 cut(s)	46, 157, 202
BcgI	CGANNNNNNTGC	2 cut(s)	310, 344
BciT130I	CCWGG	1 cut(s)	71
BisI	GCNGC	4 cut(s)	162, 165, 228, 311
BlsI	GCNGC	4 cut(s)	163, 166, 229, 312
Bme1390I	CCNGG	1 cut(s)	71
Bme18I	GGWCC	1 cut(s)	302
BmgT120I	GGNCC	1 cut(s)	302
BmiI	GGNNCC	1 cut(s)	318
BmrFI	CCNGG	1 cut(s)	71
BmsI	GCATC	2 cut(s)	33, 318
Bpu14I	TTCGAA	1 cut(s)	183
BsaXI	ACNNNNNCTCC	4 cut(s)	89, 119, 326, 356
Bsc4I	CCNNNNNNNGG	2 cut(s)	76, 140
BseBI	CCWGG	1 cut(s)	71
BseGI	GGATG	1 cut(s)	50
BseLI	CCNNNNNNNGG	2 cut(s)	76, 140
BseMII	CTCAG	1 cut(s)	228
BseXI	GCAGC	2 cut(s)	214, 297
BshFI	GGCC	2 cut(s)	5, 167
BsiSI	CCGG	3 cut(s)	123, 233, 314
BslI	CCNNNNNNNGG	2 cut(s)	76, 140
BsnI	GGCC	2 cut(s)	5, 167
Bsp119I	TTCGAA	1 cut(s)	183
Bsp1286I	GDGCHC	1 cut(s)	197
Bsp143I	GATC	3 cut(s)	37, 154, 187
BspACI	CCGC	4 cut(s)	126, 135, 161, 164
BspANI	GGCC	2 cut(s)	5, 167
BspCNI	CTCAG	1 cut(s)	229
BspLI	GGNNCC	1 cut(s)	318
BspPI	GGATC	2 cut(s)	162, 182
BspQI	GCTCTTC	1 cut(s)	354
BspT104I	TTCGAA	1 cut(s)	183
BssMI	GATC	3 cut(s)	37, 154, 187
Bst2UI	CCWGG	1 cut(s)	71
Bst4CI	ACNGT	3 cut(s)	59, 245, 302
Bst6I	CTCTTC	1 cut(s)	354
BstBI	TTCGAA	1 cut(s)	183
BstC8I	GCNNGC	1 cut(s)	128
BstDEI	CTNAG	1 cut(s)	237
BstF5I	GGATG	1 cut(s)	50
BstKTI	GATC	3 cut(s)	40, 157, 190
BstMBI	GATC	3 cut(s)	37, 154, 187
BstMWI	GCNNNNNNNGC	3 cut(s)	30, 233, 316
BstNI	CCWGG	1 cut(s)	71
BstSCI	CCNGG	1 cut(s)	69
BstV1I	GCAGC	2 cut(s)	214, 297
BstX2I	RGATCY	1 cut(s)	187
BstYI	RGATCY	1 cut(s)	187
BsuRI	GGCC	2 cut(s)	5, 167
BtsCI	GGATG	1 cut(s)	50
Cac8I	GCNNGC	1 cut(s)	128
Cfr13I	GGNCC	1 cut(s)	302
CseI	GACGC	1 cut(s)	23
CviJI	RGCY	9 cut(s)	5, 93, 130, 167, 195, 210, 227, 236, 319
CviKI_1	RGCY	9 cut(s)	5, 93, 130, 167, 195, 210, 227, 236, 319
DdeI	CTNAG	1 cut(s)	237
DpnI	GATC	3 cut(s)	39, 156, 189
DpnII	GATC	3 cut(s)	37, 154, 187
DrdI	GACNNNNNNGTC	1 cut(s)	80
DseDI	GACNNNNNNGTC	1 cut(s)	80
Eam1104I	CTCTTC	1 cut(s)	354
EarI	CTCTTC	1 cut(s)	354
Eco24I	GRGCYC	1 cut(s)	197
Eco47I	GGWCC	1 cut(s)	302
EcoRII	CCWGG	1 cut(s)	69
EcoT38I	GRGCYC	1 cut(s)	197
FaiI	YATR	1 cut(s)	255
FauI	CCCGC	2 cut(s)	119, 142
FblI	GTMKAC	1 cut(s)	149
Fnu4HI	GCNGC	4 cut(s)	162, 165, 228, 311
FokI	GGATG	1 cut(s)	37
FriOI	GRGCYC	1 cut(s)	197
Fsp4HI	GCNGC	4 cut(s)	162, 165, 228, 311
GluI	GCNGC	4 cut(s)	162, 165, 228, 311
HaeIII	GGCC	2 cut(s)	5, 167
HapII	CCGG	3 cut(s)	123, 233, 314
HgaI	GACGC	1 cut(s)	23
HincII	GTYRAC	1 cut(s)	150
HindII	GTYRAC	1 cut(s)	150
HinfI	GANTC	3 cut(s)	180, 258, 273
HpaII	CCGG	3 cut(s)	123, 233, 314
Hpy166II	GTNNAC	1 cut(s)	150
Hpy188I	TCNGA	4 cut(s)	115, 179, 192, 298
Hpy188III	TCNNGA	2 cut(s)	88, 353
Hpy8I	GTNNAC	1 cut(s)	150
Hpy99I	CGWCG	9 cut(s)	17, 32, 38, 86, 89, 154, 217, 281, 302
HpyAV	CCTTC	2 cut(s)	134, 332
HpyCH4III	ACNGT	3 cut(s)	59, 245, 302
HpyCH4V	TGCA	1 cut(s)	331
HpyF10VI	GCNNNNNNNGC	3 cut(s)	30, 233, 316
HpyF3I	CTNAG	1 cut(s)	237
Kzo9I	GATC	3 cut(s)	37, 154, 187
LguI	GCTCTTC	1 cut(s)	354
LmnI	GCTCC	2 cut(s)	235, 316
LpnPI	CCDG	9 cut(s)	56, 83, 136, 143, 192, 246, 317, 318, 327
Lsp1109I	GCAGC	2 cut(s)	214, 297
LweI	GCATC	2 cut(s)	33, 318
MalI	GATC	3 cut(s)	39, 156, 189
MboI	GATC	3 cut(s)	37, 154, 187
MboII	GAAGA	2 cut(s)	197, 341
MflI	RGATCY	1 cut(s)	187
MhlI	GDGCHC	1 cut(s)	197
MmeI	TCCRAC	2 cut(s)	78, 321
MnlI	CCTC	8 cut(s)	16, 58, 70, 115, 178, 328, 354, 357
MspI	CCGG	3 cut(s)	123, 233, 314
MspR9I	CCNGG	1 cut(s)	71
MvaI	CCWGG	1 cut(s)	71
MwoI	GCNNNNNNNGC	3 cut(s)	30, 233, 316
NdeII	GATC	3 cut(s)	37, 154, 187
NlaIV	GGNNCC	1 cut(s)	318
NmeAIII	GCCGAG	1 cut(s)	345
NspV	TTCGAA	1 cut(s)	183
PciSI	GCTCTTC	1 cut(s)	354
PcsI	WCGNNNNNNNCGW	3 cut(s)	33, 81, 93
PfeI	GAWTC	3 cut(s)	180, 258, 273
PflFI	GACNNNGTC	1 cut(s)	77
PkrI	GCNGC	4 cut(s)	163, 166, 229, 312
Psp6I	CCWGG	1 cut(s)	69
PspGI	CCWGG	1 cut(s)	69
PspN4I	GGNNCC	1 cut(s)	318
PspPI	GGNCC	1 cut(s)	302
PsuI	RGATCY	1 cut(s)	187
PsyI	GACNNNGTC	1 cut(s)	77
SalI	GTCGAC	1 cut(s)	148
SapI	GCTCTTC	1 cut(s)	354
SatI	GCNGC	4 cut(s)	162, 165, 228, 311
Sau3AI	GATC	3 cut(s)	37, 154, 187
Sau96I	GGNCC	1 cut(s)	302
ScrFI	CCNGG	1 cut(s)	71
SduI	GDGCHC	1 cut(s)	197
SetI	ASST	3 cut(s)	81, 95, 368
SfaNI	GCATC	2 cut(s)	33, 318
SfuI	TTCGAA	1 cut(s)	183
SinI	GGWCC	1 cut(s)	302
SsiI	CCGC	4 cut(s)	126, 135, 161, 164
StyD4I	CCNGG	1 cut(s)	69
TaaI	ACNGT	3 cut(s)	59, 245, 302
TaqI	TCGA	6 cut(s)	12, 27, 87, 149, 183, 276
TauI	GCSGC	2 cut(s)	164, 167
TfiI	GAWTC	3 cut(s)	180, 258, 273
TseI	GCWGC	2 cut(s)	227, 310
TspGWI	ACGGA	1 cut(s)	167
Tth111I	GACNNNGTC	1 cut(s)	77
VpaK11BI	GGWCC	1 cut(s)	302
XmiI	GTMKAC	1 cut(s)	149

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.