pycom10g24980

Clathrin is the major protein of the polyhedral coat of coated pits and vesicles

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr10
Physical Location & Seq
Reverse (-)
26694616 .. 26696657
2042 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom10g24980.3

Sequence Viewer

Length: 975 bp
ATGGCTTCCTTCGACGCGTTCAGCATGGACGGCGACGATCTCCACGCCCCCAACAGCCACTTTGACCAGGACGACGTCGTCGTCGAGAGCTACGCTGACTACGGCTCCTACACCGACCCCGCTGCCGCCGCCCCTGCCTCCCCGGATGTTTTCGGTTTCGAAGATCCCAGCCCCAACTACTCCCACTCCACTCCTTTCGATTCCGTTCCCGTTGAGAACGGCAACGGCAATGGCTACGGCGTCGGCGAGAACGGAATCGACGATGGCGTCTTCACATCGGACGGTCCCGTGCTCCCGGAACCTAGCGAGTTTGTCGAGGAAGGTGCAGCTCTTCGTGAGTGGCGCCGTCAAAATGCAATCCTACTTGAGGAGAAGGAGAAGAGGGAGAAAGAACTGAGGAACCAAATTATTGAAGAGGCTGAGGAGTTCAAGCGTGCATTCTACGAGAAAAGGAAGCTTAACGTTGAGACCAACAAGGTCGAGAACAGAGAAAAGGAGAAGTTATTCTTGGTTAATCAAGAGAATTTCCATAAAAATGCTGACAAGCAAAGTTGGAAAGCAATCGCGGAGCTCATTCCTCACGAGGTTCCCAACATTGAGAAGAGGAGAGGCAAGAAGGACCAGGAAAAGAAACCAGGGATCCAAGTCATTCAGGGCCCAAAGCCTGGAAAACCCACTGATCTTTCGCGTCTGCGGCAAATACTTGTGAAGCTGAAGCATAAAACTCCACCTCACATGATTCCACCCCCACCCGCTCCAGCCAAAGACGCCAAAGACGCCAAAGATGCCAAAGACGCCAAAGATGGGAAGGCTCCTGCCAAAGATACCAAAAATGTAAAGGATGCAGCACCAAAAGCTAATGGGTCTGCAGAAGCTGAGGTGCCTGCTTCAGAAGCCAAGGATGCCACCTCCAATAGTTCTTCAGATGCACCCGAACAAGCCGCTCCGGCACCTACTGAGGAACTCACTGCTTGA

Protein Analysis

325

Amino Acids

35.55

Weight (kDa)

5.03

Isoelectric Point (pI)

54.29

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0013811)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 3 cut(s) 77, 80, 266
AatII GACGTC 1 cut(s) 78
AccB1I GGYRCC 3 cut(s) 342, 880, 949
AccB7I CCANNNNNTGG 1 cut(s) 665
AccBSI CCGCTC 2 cut(s) 755, 944
AccII CGCG 3 cut(s) 17, 566, 688
AciI CCGC 7 cut(s) 120, 126, 129, 566, 694, 753, 942
AclI AACGTT 1 cut(s) 462
AclWI GGATC 3 cut(s) 158, 634, 647
AcsI RAATTY 1 cut(s) 523
AcuI CTGAAG 3 cut(s) 734, 873, 906
AcyI GRCGYC 7 cut(s) 75, 240, 267, 343, 768, 777, 795
AfiI CCNNNNNNNGG 3 cut(s) 367, 665, 804
AflIII ACRYGT 1 cut(s) 15
AgsI TTSAA 2 cut(s) 413, 430
AjnI CCWGG 4 cut(s) 66, 621, 634, 664
AjuI GAANNNNNNNTTGG 2 cut(s) 491, 523
AluBI AGCT 7 cut(s) 90, 329, 457, 571, 712, 857, 875
AluI AGCT 7 cut(s) 90, 329, 457, 571, 712, 857, 875
Alw21I GWGCWC 2 cut(s) 294, 573
Alw26I GTCTC 1 cut(s) 461
AlwI GGATC 3 cut(s) 158, 634, 647
AlwNI CAGNNNCTG 1 cut(s) 875
AoxI GGCC 1 cut(s) 655
ApaI GGGCCC 1 cut(s) 659
ApeKI GCWGC 3 cut(s) 122, 326, 845
ApoI RAATTY 1 cut(s) 523
Asp700I GAANNNNTTC 1 cut(s) 503
AspLEI GCGC 1 cut(s) 345
AspS9I GGNCC 4 cut(s) 284, 619, 655, 656
AsuC2I CCSGG 2 cut(s) 143, 296
AsuII TTCGAA 1 cut(s) 159
AvaII GGWCC 2 cut(s) 284, 619
BaeGI GKGCMC 1 cut(s) 659
BamHI GGATCC 1 cut(s) 639
BanI GGYRCC 3 cut(s) 342, 880, 949
BanII GRGCYC 2 cut(s) 573, 659
BauI CACGAG 1 cut(s) 581
BbsI GAAGAC 1 cut(s) 262
Bbv12I GWGCWC 2 cut(s) 294, 573
BbvCI CCTCAGC 2 cut(s) 420, 876
BbvI GCAGC 3 cut(s) 109, 338, 857
BccI CCATC 2 cut(s) 257, 797
BceAI ACGGC 6 cut(s) 46, 118, 235, 241, 253, 330
BcgI CGANNNNNNTGC 4 cut(s) 104, 138, 305, 339
BciT130I CCWGG 4 cut(s) 68, 623, 636, 666
BcnI CCSGG 2 cut(s) 143, 296
BcoDI GTCTC 1 cut(s) 461
BfaI CTAG 1 cut(s) 303
BfmI CTRYAG 1 cut(s) 867
BfoI RGCGCY 1 cut(s) 346
BglI GCCNNNNNGGC 1 cut(s) 947
BisI GCNGC 7 cut(s) 123, 126, 129, 327, 695, 846, 942
BlsI GCNGC 7 cut(s) 124, 127, 130, 328, 696, 847, 943
Bme1390I CCNGG 6 cut(s) 68, 143, 296, 623, 636, 666
Bme18I GGWCC 2 cut(s) 284, 619
BmgT120I GGNCC 4 cut(s) 284, 619, 655, 656
BmrFI CCNGG 6 cut(s) 68, 143, 296, 623, 636, 666
BmsI GCATC 4 cut(s) 775, 832, 892, 916
BpiI GAAGAC 1 cut(s) 262
BpmI CTGGAG 1 cut(s) 741
Bpu10I CCTNAGC 2 cut(s) 420, 876
Bpu14I TTCGAA 1 cut(s) 159
BpuEI CTTGAG 1 cut(s) 386
BpuMI CCSGG 2 cut(s) 143, 296
BsaHI GRCGYC 7 cut(s) 75, 240, 267, 343, 768, 777, 795
BsaI GGTCTC 1 cut(s) 461
BsaJI CCNNGG 3 cut(s) 141, 635, 897
BsaXI ACNNNNNCTCC 4 cut(s) 89, 119, 170, 200
Bsc4I CCNNNNNNNGG 3 cut(s) 367, 665, 804
Bse3DI GCAATG 1 cut(s) 235
BseBI CCWGG 4 cut(s) 68, 623, 636, 666
BseDI CCNNGG 3 cut(s) 141, 635, 897
BseGI GGATG 3 cut(s) 151, 847, 907
BseLI CCNNNNNNNGG 3 cut(s) 367, 665, 804
BseMI GCAATG 1 cut(s) 235
BseMII CTCAG 4 cut(s) 386, 411, 867, 948
BseRI GAGGAG 3 cut(s) 383, 437, 619
BseSI GKGCMC 1 cut(s) 659
BseXI GCAGC 3 cut(s) 109, 338, 857
BseYI CCCAGC 1 cut(s) 167
BsgI GTGCAG 1 cut(s) 345
Bsh1236I CGCG 3 cut(s) 17, 566, 688
BshFI GGCC 1 cut(s) 657
BshNI GGYRCC 3 cut(s) 342, 880, 949
BsiHKAI GWGCWC 2 cut(s) 294, 573
BsiSI CCGG 3 cut(s) 143, 296, 947
BslFI GGGAC 1 cut(s) 270
BslI CCNNNNNNNGG 3 cut(s) 367, 665, 804
BsmAI GTCTC 1 cut(s) 461
BsmFI GGGAC 1 cut(s) 270
BsmI GAATGC 1 cut(s) 437
BsnI GGCC 1 cut(s) 657
Bso31I GGTCTC 1 cut(s) 461
Bsp119I TTCGAA 1 cut(s) 159
Bsp120I GGGCCC 1 cut(s) 655
Bsp1286I GDGCHC 3 cut(s) 294, 573, 659
Bsp143I GATC 4 cut(s) 37, 163, 639, 679
BspACI CCGC 7 cut(s) 120, 126, 129, 566, 694, 753, 942
BspANI GGCC 1 cut(s) 657
BspCNI CTCAG 4 cut(s) 387, 412, 868, 949
BspFNI CGCG 3 cut(s) 17, 566, 688
BspMAI CTGCAG 1 cut(s) 871
BspPI GGATC 3 cut(s) 158, 634, 647
BspQI GCTCTTC 1 cut(s) 336
BspT104I TTCGAA 1 cut(s) 159
BspT107I GGYRCC 3 cut(s) 342, 880, 949
BspTNI GGTCTC 1 cut(s) 461
BsrBI CCGCTC 2 cut(s) 755, 944
BsrDI GCAATG 1 cut(s) 235
BssECI CCNNGG 3 cut(s) 141, 635, 897
BssMI GATC 4 cut(s) 37, 163, 639, 679
BssNI GRCGYC 7 cut(s) 75, 240, 267, 343, 768, 777, 795
BssSI CACGAG 1 cut(s) 581
BssT1I CCWWGG 1 cut(s) 897
Bst2BI CACGAG 1 cut(s) 581
Bst2UI CCWGG 4 cut(s) 68, 623, 636, 666
Bst4CI ACNGT 1 cut(s) 284
Bst6I CTCTTC 4 cut(s) 336, 374, 408, 596
BstACI GRCGYC 7 cut(s) 75, 240, 267, 343, 768, 777, 795
BstBI TTCGAA 1 cut(s) 159
BstC8I GCNNGC 2 cut(s) 435, 885
BstDEI CTNAG 4 cut(s) 395, 420, 876, 957
BstENI CCTNNNNNAGG 1 cut(s) 365
BstF5I GGATG 3 cut(s) 151, 847, 907
BstFNI CGCG 3 cut(s) 17, 566, 688
BstH2I RGCGCY 1 cut(s) 346
BstHHI GCGC 1 cut(s) 345
BstKTI GATC 4 cut(s) 40, 166, 642, 682
BstMAI GTCTC 1 cut(s) 461
BstMBI GATC 4 cut(s) 37, 163, 639, 679
BstNI CCWGG 4 cut(s) 68, 623, 636, 666
BstSCI CCNGG 6 cut(s) 66, 141, 294, 621, 634, 664
BstSFI CTRYAG 1 cut(s) 867
BstSLI GKGCMC 1 cut(s) 659
BstUI CGCG 3 cut(s) 17, 566, 688
BstV1I GCAGC 3 cut(s) 109, 338, 857
BstV2I GAAGAC 1 cut(s) 262
BstX2I RGATCY 2 cut(s) 163, 639
BstYI RGATCY 2 cut(s) 163, 639
BsuRI GGCC 1 cut(s) 657
BtsCI GGATG 3 cut(s) 151, 847, 907
BtsI GCAGTG 1 cut(s) 966
BtsIMutI CAGTG 2 cut(s) 675, 966
Cac8I GCNNGC 2 cut(s) 435, 885
CaiI CAGNNNCTG 1 cut(s) 875
CfoI GCGC 1 cut(s) 345
Cfr13I GGNCC 4 cut(s) 284, 619, 655, 656
CseI GACGC 7 cut(s) 23, 229, 256, 677, 776, 785, 803
CviAII CATG 2 cut(s) 25, 736
DdeI CTNAG 4 cut(s) 395, 420, 876, 957
DinI GGCGCC 1 cut(s) 344
DpnI GATC 4 cut(s) 39, 165, 641, 681
DpnII GATC 4 cut(s) 37, 163, 639, 679
DrdI GACNNNNNNGTC 3 cut(s) 77, 80, 266
DseDI GACNNNNNNGTC 3 cut(s) 77, 80, 266
Eam1104I CTCTTC 4 cut(s) 336, 374, 408, 596
EarI CTCTTC 4 cut(s) 336, 374, 408, 596
Ecl136II GAGCTC 1 cut(s) 571
Eco130I CCWWGG 1 cut(s) 897
Eco24I GRGCYC 2 cut(s) 573, 659
Eco31I GGTCTC 1 cut(s) 461
Eco47I GGWCC 2 cut(s) 284, 619
Eco53kI GAGCTC 1 cut(s) 571
Eco57I CTGAAG 3 cut(s) 734, 873, 906
EcoICRI GAGCTC 1 cut(s) 571
EcoNI CCTNNNNNAGG 1 cut(s) 365
EcoO109I RGGNCCY 1 cut(s) 655
EcoRII CCWGG 4 cut(s) 66, 621, 634, 664
EcoT14I CCWWGG 1 cut(s) 897
EcoT38I GRGCYC 2 cut(s) 573, 659
EgeI GGCGCC 1 cut(s) 344
EheI GGCGCC 1 cut(s) 344
ErhI CCWWGG 1 cut(s) 897
FaeI CATG 2 cut(s) 28, 739
FaiI YATR 4 cut(s) 26, 531, 720, 737
FalI AAGNNNNNCTT 2 cut(s) 491, 523
FaqI GGGAC 1 cut(s) 270
FatI CATG 2 cut(s) 24, 735
FauI CCCGC 2 cut(s) 127, 760
Fnu4HI GCNGC 7 cut(s) 123, 126, 129, 327, 695, 846, 942
FokI GGATG 3 cut(s) 158, 854, 914
FriOI GRGCYC 2 cut(s) 573, 659
Fsp4HI GCNGC 7 cut(s) 123, 126, 129, 327, 695, 846, 942
FspBI CTAG 1 cut(s) 303
GlaI GCGC 1 cut(s) 344
GluI GCNGC 7 cut(s) 123, 126, 129, 327, 695, 846, 942
GsaI CCCAGC 1 cut(s) 171
GsuI CTGGAG 1 cut(s) 741
HaeII RGCGCY 1 cut(s) 346
HaeIII GGCC 1 cut(s) 657
HapII CCGG 3 cut(s) 143, 296, 947
HgaI GACGC 7 cut(s) 23, 229, 256, 677, 776, 785, 803
HhaI GCGC 1 cut(s) 345
Hin1I GRCGYC 7 cut(s) 75, 240, 267, 343, 768, 777, 795
Hin1II CATG 2 cut(s) 28, 739
Hin6I GCGC 1 cut(s) 343
HinP1I GCGC 1 cut(s) 343
HindIII AAGCTT 1 cut(s) 455
HinfI GANTC 3 cut(s) 200, 255, 739
HpaII CCGG 3 cut(s) 143, 296, 947
Hpy188I TCNGA 3 cut(s) 280, 892, 925
Hpy188III TCNNGA 5 cut(s) 85, 335, 481, 518, 581
Hpy99I CGWCG 8 cut(s) 17, 38, 77, 80, 83, 86, 245, 263
HpyAV CCTTC 5 cut(s) 19, 314, 367, 610, 802
HpyCH4III ACNGT 1 cut(s) 284
HpyCH4IV ACGT 2 cut(s) 75, 462
HpyCH4V TGCA 6 cut(s) 326, 356, 437, 845, 869, 929
HpyF3I CTNAG 4 cut(s) 395, 420, 876, 957
HpySE526I ACGT 2 cut(s) 75, 462
Hsp92I GRCGYC 7 cut(s) 75, 240, 267, 343, 768, 777, 795
Hsp92II CATG 2 cut(s) 28, 739
HspAI GCGC 1 cut(s) 343
KasI GGCGCC 1 cut(s) 342
Kzo9I GATC 4 cut(s) 37, 163, 639, 679
LguI GCTCTTC 1 cut(s) 336
LmnI GCTCC 6 cut(s) 110, 297, 568, 760, 817, 949
Lsp1109I GCAGC 3 cut(s) 109, 338, 857
LweI GCATC 4 cut(s) 775, 832, 892, 916
MaeI CTAG 1 cut(s) 303
MaeII ACGT 2 cut(s) 75, 462
MalI GATC 4 cut(s) 39, 165, 641, 681
MbiI CCGCTC 2 cut(s) 755, 944
MboI GATC 4 cut(s) 37, 163, 639, 679
MboII GAAGA 7 cut(s) 173, 262, 323, 391, 425, 613, 912
MflI RGATCY 2 cut(s) 163, 639
MhlI GDGCHC 3 cut(s) 294, 573, 659
MluCI AATT 2 cut(s) 405, 523
MluI ACGCGT 1 cut(s) 15
Mly113I GGCGCC 1 cut(s) 343
MmeI TCCRAC 1 cut(s) 533
MroXI GAANNNNTTC 1 cut(s) 503
MseI TTAA 2 cut(s) 459, 513
MslI CAYNNNNRTG 1 cut(s) 534
MspA1I CMGCKG 1 cut(s) 122
MspI CCGG 3 cut(s) 143, 296, 947
MspR9I CCNGG 6 cut(s) 68, 143, 296, 623, 636, 666
Mva1269I GAATGC 1 cut(s) 437
MvaI CCWGG 4 cut(s) 68, 623, 636, 666
MvnI CGCG 3 cut(s) 17, 566, 688
NarI GGCGCC 1 cut(s) 343
NciI CCSGG 2 cut(s) 143, 296
NdeII GATC 4 cut(s) 37, 163, 639, 679
NlaIII CATG 2 cut(s) 28, 739
NspV TTCGAA 1 cut(s) 159
PciSI GCTCTTC 1 cut(s) 336
PcsI WCGNNNNNNNCGW 5 cut(s) 78, 81, 243, 258, 264
PctI GAATGC 1 cut(s) 437
PdmI GAANNNNTTC 1 cut(s) 503
PfeI GAWTC 3 cut(s) 200, 255, 739
PflFI GACNNNGTC 2 cut(s) 74, 77
PflMI CCANNNNNTGG 1 cut(s) 665
PfoI TCCNGGA 1 cut(s) 294
PkrI GCNGC 7 cut(s) 124, 127, 130, 328, 696, 847, 943
PluTI GGCGCC 1 cut(s) 346
Psp124BI GAGCTC 1 cut(s) 573
Psp1406I AACGTT 1 cut(s) 462
Psp6I CCWGG 4 cut(s) 66, 621, 634, 664
PspFI CCCAGC 1 cut(s) 167
PspGI CCWGG 4 cut(s) 66, 621, 634, 664
PspOMI GGGCCC 1 cut(s) 655
PspPI GGNCC 4 cut(s) 284, 619, 655, 656
PstI CTGCAG 1 cut(s) 871
PstNI CAGNNNCTG 1 cut(s) 875
PsuI RGATCY 2 cut(s) 163, 639
PsyI GACNNNGTC 2 cut(s) 74, 77
RseI CAYNNNNRTG 1 cut(s) 534
SacI GAGCTC 1 cut(s) 573
SapI GCTCTTC 1 cut(s) 336
SaqAI TTAA 2 cut(s) 459, 513
SatI GCNGC 7 cut(s) 123, 126, 129, 327, 695, 846, 942
Sau3AI GATC 4 cut(s) 37, 163, 639, 679
Sau96I GGNCC 4 cut(s) 284, 619, 655, 656
ScrFI CCNGG 6 cut(s) 68, 143, 296, 623, 636, 666
SduI GDGCHC 3 cut(s) 294, 573, 659
SfaNI GCATC 4 cut(s) 775, 832, 892, 916
SfcI CTRYAG 1 cut(s) 867
SfoI GGCGCC 1 cut(s) 344
SfuI TTCGAA 1 cut(s) 159
SinI GGWCC 2 cut(s) 284, 619
SmiMI CAYNNNNRTG 1 cut(s) 534
SmlI CTYRAG 1 cut(s) 365
SmoI CTYRAG 1 cut(s) 365
Sse9I AATT 2 cut(s) 405, 523
SsiI CCGC 7 cut(s) 120, 126, 129, 566, 694, 753, 942
SspDI GGCGCC 1 cut(s) 342
SspMI CTAG 1 cut(s) 303
SstI GAGCTC 1 cut(s) 573
StyD4I CCNGG 6 cut(s) 66, 141, 294, 621, 634, 664
StyI CCWWGG 1 cut(s) 897
TaaI ACNGT 1 cut(s) 284
TaiI ACGT 2 cut(s) 78, 465
TaqI TCGA 7 cut(s) 12, 84, 159, 198, 258, 315, 480
TasI AATT 2 cut(s) 405, 523
TauI GCSGC 4 cut(s) 128, 131, 697, 944
TfiI GAWTC 3 cut(s) 200, 255, 739
Tru1I TTAA 2 cut(s) 459, 513
Tru9I TTAA 2 cut(s) 459, 513
TscAI CASTG 2 cut(s) 682, 973
TseI GCWGC 3 cut(s) 122, 326, 845
TspGWI ACGGA 2 cut(s) 193, 267
TspRI CASTG 2 cut(s) 682, 973
Tth111I GACNNNGTC 2 cut(s) 74, 77
Van91I CCANNNNNTGG 1 cut(s) 665
VpaK11BI GGWCC 2 cut(s) 284, 619
XagI CCTNNNNNAGG 1 cut(s) 365
XapI RAATTY 1 cut(s) 523
XmnI GAANNNNTTC 1 cut(s) 503
XspI CTAG 1 cut(s) 303
ZraI GACGTC 1 cut(s) 76
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.