Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8429453.1

Orthogroup ID

OG0013811

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 884

Gene Structure 884 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8429453.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 649 bp

tcaaaatgccattctgcttgaggggaaggaaaagagagagaaagaactgaggatccagattattgaagaagctgaggagttcaagcgcgcattctatgagaaaaggaagcttaatgttgagactaacaaggttcagaacagggaaaaggagaagttgttcttggctgatcaagagaacttccacaagaatgcagacaagcaaagttggaaggcaatagctgagctcattcctcacgagattcccaacattgagaaaaagagaggcaagaaggatcaggacaagaaaccatcgatcacggtcattcagggtccaaagcctggaaaacccactgatctttcaaggatgcgacaaatacttttgaagctgaagcatacaactccgcctcacatgattcctaaaccacctgctcctgctaaagatgcaaaagatggaaaggatgcaaaagatgccaagaatgtaaaggatgcaaaagatgccaaaaatgtaaaggatgcaaaagatgtgaagactgcagcatctaaaactaatggatctgcagaagctgcggtgcctgctgcttcagaaaccaaagatgccaccacctctaatggcacttcagatgcaccggaacaatcagttcctgtttctactgaggaacagtctgcttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005198 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005886 GO:0006810 GO:0006897 GO:0006898 GO:0008150 GO:0012506 GO:0016020 GO:0016192 GO:0030117 GO:0030118 GO:0030120 GO:0030125 GO:0030135 GO:0030136 GO:0030276 GO:0030659 GO:0030662 GO:0030665 GO:0031090 GO:0031410 GO:0031982 GO:0032050 GO:0032991 GO:0043226 GO:0043227 GO:0043229 GO:0044422 GO:0044424 GO:0044425 GO:0044433 GO:0044444 GO:0044446 GO:0044464 GO:0048475 GO:0051179 GO:0051234 GO:0071944 GO:0072583 GO:0097708 GO:0098588 GO:0098657 GO:0098796 GO:0098805

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Clathrin_lg_ch

Protein Analysis

215

Amino Acids

23.9

Weight (kDa)

9.37

Isoelectric Point (pI)

45.29

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013811)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g04840
malus_domestica	MD05G1316400.v1.1 MD10G1296900.v1.1
prunus_persica	Prupe.4G043600_v2.0.a1
pyrus_communis	pycom10g24980
rosa_chinensis	RchiOBHm_Chr5g0008001
rosa_laevigata	RLG00000031526
rosa_multiflora	Rmu_co8429453.1_g000001 Rmu_co8446221.1_g000001 Rmu_sc0007348.1_g000005
rosa_roxburghii	Rroxscaffold_1G00068470
rosa_rugosa	Rorug04G0432300
rosa_samantha	Rh5AG060500 Rh5BG057300 Rh5CG067400 Rh5DG056500
rosa_wichuraiana	Rw5G006010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	413
Acc36I	ACCTGC	1 cut(s)	413
AccB1I	GGYRCC	1 cut(s)	548
AccB7I	CCANNNNNTGG	1 cut(s)	318
AccII	CGCG	1 cut(s)	88
AciI	CCGC	2 cut(s)	381, 546
AclWI	GGATC	4 cut(s)	47, 60, 280, 539
AcuI	CTGAAG	3 cut(s)	387, 544, 580
AfiI	CCNNNNNNNGG	1 cut(s)	318
AgsI	TTSAA	4 cut(s)	66, 83, 340, 362
AjnI	CCWGG	1 cut(s)	317
AjuI	GAANNNNNNNTTGG	2 cut(s)	144, 176
AloI	GAACNNNNNNTCC	4 cut(s)	37, 69, 141, 173
AluBI	AGCT	6 cut(s)	72, 110, 219, 224, 365, 543
AluI	AGCT	6 cut(s)	72, 110, 219, 224, 365, 543
Alw21I	GWGCWC	1 cut(s)	226
Alw26I	GTCTC	1 cut(s)	114
AlwI	GGATC	4 cut(s)	47, 60, 280, 539
AlwNI	CAGNNNCTG	2 cut(s)	543, 621
ApeKI	GCWGC	3 cut(s)	513, 543, 555
Asp700I	GAANNNNTTC	1 cut(s)	156
AspLEI	GCGC	2 cut(s)	88, 90
AspS9I	GGNCC	1 cut(s)	309
AvaII	GGWCC	1 cut(s)	309
BamHI	GGATCC	1 cut(s)	52
BanI	GGYRCC	1 cut(s)	548
BanII	GRGCYC	1 cut(s)	226
BauI	CACGAG	1 cut(s)	234
BbsI	GAAGAC	1 cut(s)	513
Bbv12I	GWGCWC	1 cut(s)	226
BbvCI	CCTCAGC	1 cut(s)	73
BbvI	GCAGC	3 cut(s)	525, 530, 542
BccI	CCATC	2 cut(s)	296, 423
BciT130I	CCWGG	1 cut(s)	319
BclI	TGATCA	1 cut(s)	167
BcoDI	GTCTC	1 cut(s)	114
BfmI	CTRYAG	2 cut(s)	511, 535
BfuAI	ACCTGC	1 cut(s)	413
BisI	GCNGC	3 cut(s)	514, 544, 556
BlpI	GCTNAGC	1 cut(s)	220
BlsI	GCNGC	3 cut(s)	515, 545, 557
Bme1390I	CCNGG	1 cut(s)	319
Bme18I	GGWCC	1 cut(s)	309
BmgT120I	GGNCC	1 cut(s)	309
BmiI	GGNNCC	3 cut(s)	54, 310, 550
BmrFI	CCNGG	1 cut(s)	319
BpiI	GAAGAC	1 cut(s)	513
Bpu10I	CCTNAGC	1 cut(s)	73
Bpu1102I	GCTNAGC	1 cut(s)	220
BpuEI	CTTGAG	1 cut(s)	39
Bsa29I	ATCGAT	1 cut(s)	291
BsaWI	WCCGGW	1 cut(s)	605
BsaXI	ACNNNNNCTCC	2 cut(s)	141, 171
Bsc4I	CCNNNNNNNGG	1 cut(s)	318
BseBI	CCWGG	1 cut(s)	319
BseCI	ATCGAT	1 cut(s)	291
BseGI	GGATG	4 cut(s)	349, 443, 470, 497
BseLI	CCNNNNNNNGG	1 cut(s)	318
BseMII	CTCAG	4 cut(s)	39, 64, 211, 622
BsePI	GCGCGC	1 cut(s)	86
BseRI	GAGGAG	1 cut(s)	90
BseXI	GCAGC	3 cut(s)	525, 530, 542
Bsh1236I	CGCG	1 cut(s)	88
BshNI	GGYRCC	1 cut(s)	548
BshVI	ATCGAT	1 cut(s)	291
BsiHKAI	GWGCWC	1 cut(s)	226
BsiSI	CCGG	1 cut(s)	606
BslI	CCNNNNNNNGG	1 cut(s)	318
BsmAI	GTCTC	1 cut(s)	114
BsmI	GAATGC	2 cut(s)	90, 194
Bsp1286I	GDGCHC	1 cut(s)	226
Bsp143I	GATC	6 cut(s)	52, 167, 272, 292, 332, 531
Bsp1720I	GCTNAGC	1 cut(s)	220
BspACI	CCGC	2 cut(s)	381, 546
BspCNI	CTCAG	4 cut(s)	40, 65, 212, 623
BspDI	ATCGAT	1 cut(s)	291
BspFNI	CGCG	1 cut(s)	88
BspLI	GGNNCC	3 cut(s)	54, 310, 550
BspMAI	CTGCAG	2 cut(s)	515, 539
BspMI	ACCTGC	1 cut(s)	413
BspPI	GGATC	4 cut(s)	47, 60, 280, 539
BspT107I	GGYRCC	1 cut(s)	548
BssHII	GCGCGC	1 cut(s)	86
BssMI	GATC	6 cut(s)	52, 167, 272, 292, 332, 531
BssSI	CACGAG	1 cut(s)	234
Bst2BI	CACGAG	1 cut(s)	234
Bst2UI	CCWGG	1 cut(s)	319
Bst4CI	ACNGT	2 cut(s)	299, 640
BstAPI	GCANNNNNTGC	3 cut(s)	447, 474, 543
BstC8I	GCNNGC	2 cut(s)	88, 553
BstDEI	CTNAG	4 cut(s)	48, 73, 220, 631
BstF5I	GGATG	4 cut(s)	349, 443, 470, 497
BstFNI	CGCG	1 cut(s)	88
BstHHI	GCGC	2 cut(s)	88, 90
BstKTI	GATC	6 cut(s)	55, 170, 275, 295, 335, 534
BstMAI	GTCTC	1 cut(s)	114
BstMBI	GATC	6 cut(s)	52, 167, 272, 292, 332, 531
BstMWI	GCNNNNNNNGC	5 cut(s)	420, 447, 474, 543, 552
BstNI	CCWGG	1 cut(s)	319
BstSCI	CCNGG	1 cut(s)	317
BstSFI	CTRYAG	2 cut(s)	511, 535
BstUI	CGCG	1 cut(s)	88
BstV1I	GCAGC	3 cut(s)	525, 530, 542
BstV2I	GAAGAC	1 cut(s)	513
BstX2I	RGATCY	2 cut(s)	52, 531
BstYI	RGATCY	2 cut(s)	52, 531
Bsu15I	ATCGAT	1 cut(s)	291
BsuTUI	ATCGAT	1 cut(s)	291
BtsCI	GGATG	4 cut(s)	349, 443, 470, 497
BtsIMutI	CAGTG	1 cut(s)	328
BveI	ACCTGC	1 cut(s)	413
Cac8I	GCNNGC	2 cut(s)	88, 553
CaiI	CAGNNNCTG	2 cut(s)	543, 621
CfoI	GCGC	2 cut(s)	88, 90
Cfr13I	GGNCC	1 cut(s)	309
ClaI	ATCGAT	1 cut(s)	291
CviAII	CATG	1 cut(s)	389
CviJI	RGCY	8 cut(s)	72, 110, 165, 219, 224, 317, 365, 543
CviKI_1	RGCY	8 cut(s)	72, 110, 165, 219, 224, 317, 365, 543
DdeI	CTNAG	4 cut(s)	48, 73, 220, 631
DpnI	GATC	6 cut(s)	54, 169, 274, 294, 334, 533
DpnII	GATC	6 cut(s)	52, 167, 272, 292, 332, 531
EciI	GGCGGA	1 cut(s)	370
Ecl136II	GAGCTC	1 cut(s)	224
Eco24I	GRGCYC	1 cut(s)	226
Eco47I	GGWCC	1 cut(s)	309
Eco53kI	GAGCTC	1 cut(s)	224
Eco57I	CTGAAG	3 cut(s)	387, 544, 580
EcoICRI	GAGCTC	1 cut(s)	224
EcoRII	CCWGG	1 cut(s)	317
EcoT38I	GRGCYC	1 cut(s)	226
FaeI	CATG	1 cut(s)	392
FaiI	YATR	3 cut(s)	97, 373, 390
FalI	AAGNNNNNCTT	2 cut(s)	144, 176
FatI	CATG	1 cut(s)	388
FbaI	TGATCA	1 cut(s)	167
Fnu4HI	GCNGC	3 cut(s)	514, 544, 556
FokI	GGATG	4 cut(s)	356, 450, 477, 504
FriOI	GRGCYC	1 cut(s)	226
Fsp4HI	GCNGC	3 cut(s)	514, 544, 556
GlaI	GCGC	2 cut(s)	87, 89
GluI	GCNGC	3 cut(s)	514, 544, 556
HapII	CCGG	1 cut(s)	606
HhaI	GCGC	2 cut(s)	88, 90
Hin1II	CATG	1 cut(s)	392
Hin6I	GCGC	2 cut(s)	86, 88
HinP1I	GCGC	2 cut(s)	86, 88
HindIII	AAGCTT	1 cut(s)	108
HinfI	GANTC	2 cut(s)	239, 392
HpaII	CCGG	1 cut(s)	606
Hpy188I	TCNGA	3 cut(s)	136, 563, 599
Hpy188III	TCNNGA	4 cut(s)	56, 171, 234, 276
HpyAV	CCTTC	3 cut(s)	20, 203, 263
HpyCH4III	ACNGT	2 cut(s)	299, 640
HpyCH4V	TGCA	8 cut(s)	192, 423, 441, 468, 495, 513, 537, 603
HpyF10VI	GCNNNNNNNGC	5 cut(s)	420, 447, 474, 543, 552
HpyF3I	CTNAG	4 cut(s)	48, 73, 220, 631
Hsp92II	CATG	1 cut(s)	392
HspAI	GCGC	2 cut(s)	86, 88
Ksp22I	TGATCA	1 cut(s)	167
Kzo9I	GATC	6 cut(s)	52, 167, 272, 292, 332, 531
LmnI	GCTCC	1 cut(s)	413
Lsp1109I	GCAGC	3 cut(s)	525, 530, 542
MalI	GATC	6 cut(s)	54, 169, 274, 294, 334, 533
MboI	GATC	6 cut(s)	52, 167, 272, 292, 332, 531
MboII	GAAGA	2 cut(s)	78, 518
MflI	RGATCY	2 cut(s)	52, 531
MhlI	GDGCHC	1 cut(s)	226
MmeI	TCCRAC	1 cut(s)	186
MnlI	CCTC	8 cut(s)	14, 43, 68, 241, 255, 394, 593, 626
MroXI	GAANNNNTTC	1 cut(s)	156
MseI	TTAA	2 cut(s)	112, 647
MslI	CAYNNNNRTG	1 cut(s)	187
MspI	CCGG	1 cut(s)	606
MspR9I	CCNGG	1 cut(s)	319
Mva1269I	GAATGC	2 cut(s)	90, 194
MvaI	CCWGG	1 cut(s)	319
MvnI	CGCG	1 cut(s)	88
MwoI	GCNNNNNNNGC	5 cut(s)	420, 447, 474, 543, 552
NdeII	GATC	6 cut(s)	52, 167, 272, 292, 332, 531
NlaIII	CATG	1 cut(s)	392
NlaIV	GGNNCC	3 cut(s)	54, 310, 550
PaqCI	CACCTGC	1 cut(s)	413
PauI	GCGCGC	1 cut(s)	86
PctI	GAATGC	2 cut(s)	90, 194
PdmI	GAANNNNTTC	1 cut(s)	156
PfeI	GAWTC	2 cut(s)	239, 392
PflMI	CCANNNNNTGG	1 cut(s)	318
PkrI	GCNGC	3 cut(s)	515, 545, 557
Psp124BI	GAGCTC	1 cut(s)	226
Psp6I	CCWGG	1 cut(s)	317
PspGI	CCWGG	1 cut(s)	317
PspN4I	GGNNCC	3 cut(s)	54, 310, 550
PspPI	GGNCC	1 cut(s)	309
PstI	CTGCAG	2 cut(s)	515, 539
PstNI	CAGNNNCTG	2 cut(s)	543, 621
PsuI	RGATCY	2 cut(s)	52, 531
PteI	GCGCGC	1 cut(s)	86
RseI	CAYNNNNRTG	1 cut(s)	187
SacI	GAGCTC	1 cut(s)	226
SaqAI	TTAA	2 cut(s)	112, 647
SatI	GCNGC	3 cut(s)	514, 544, 556
Sau3AI	GATC	6 cut(s)	52, 167, 272, 292, 332, 531
Sau96I	GGNCC	1 cut(s)	309
ScrFI	CCNGG	1 cut(s)	319
SduI	GDGCHC	1 cut(s)	226
SetI	ASST	9 cut(s)	74, 112, 133, 221, 226, 367, 407, 545, 585
SfcI	CTRYAG	2 cut(s)	511, 535
SinI	GGWCC	1 cut(s)	309
SmiMI	CAYNNNNRTG	1 cut(s)	187
SmlI	CTYRAG	1 cut(s)	18
SmoI	CTYRAG	1 cut(s)	18
SsiI	CCGC	2 cut(s)	381, 546
SstI	GAGCTC	1 cut(s)	226
StyD4I	CCNGG	1 cut(s)	317
TaaI	ACNGT	2 cut(s)	299, 640
TaqI	TCGA	1 cut(s)	291
TfiI	GAWTC	2 cut(s)	239, 392
Tru1I	TTAA	2 cut(s)	112, 647
Tru9I	TTAA	2 cut(s)	112, 647
TscAI	CASTG	1 cut(s)	335
TseI	GCWGC	3 cut(s)	513, 543, 555
TspRI	CASTG	1 cut(s)	335
Van91I	CCANNNNNTGG	1 cut(s)	318
VpaK11BI	GGWCC	1 cut(s)	309
XmnI	GAANNNNTTC	1 cut(s)	156

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.