Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0013811

Physical Location & Seq

Genomic Coordinates Forward (+)

5922251 .. 5924193

Gene Structure 1943 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000031526

Sequence Viewer

CDS Protein Promoter (2k)

Length: 885 bp

ATGGCTTCGTTCGACGCTTTCAGCATCGACGGCGACGATCTCAACGCCTCATCCAACCGTCCATTTGACCAGGACGAGGTCGTCGTCGAGAGCTACGACTACGGCTCGTACTCGGATTTCTCCGGCGGGCTTCCCACCGAAGGAGTGTCGACGGATCAGGCGGCGGCCTCGCCGTTCGGATTCGAAGATCCGAGCCCGAACTACTCTGGCTCGTCGCCGTTCGGGCCTGCTCCGGCTGAGAACGGTAATGGATATGGAATCGGCGAGAATGGAATCGGCGAGAATGGAATCGACGATGGAGTTTTTGCTTCCGACGGTCCTGTGCTGCCGGAGCCGAGCGAGATGCAGGAGGAAGGGTTTGCTCTTCGTGAGTGGAGGAGTAGTTCTTTATATTTGTTCTTGGCTGATCAAGAGAACTTCCACAAGAATGCAGACAAGCAAAGTTGGAAGGCAATAGCTGAGCTCATTCCTCACGAGATTCCCAACATCGAGAAAAAGAGAGGCAAGAAGGATCAGGACAAGAAACCATCGATCACGGTCATTCAGGGTCCAAAGCCTGGAAAACCCACTGATCTTTCAAGGATGCGACAAATACTTTTGAAGCTGAAGCATACAACTCCACCTCACATGATTCCTAAACCACCTGCTCCTGCTAAAGATGCAAAAGATGGAAAGGATGCAAAAGATGCCAAGAATGTAAAGGATGCAAAAGATGCCAAGAATGTAAAGGATGCAAAAGATGTGAAGACGGCAGCATCTAAAACTAATGGATCAGCAGAAGCTGTGGTGCCTGCTGCTTCAGAAGCCAAAGATGCCACCTCTAATGGCACTTCAGATGCACCGGAACAATCAGTTCCTGTTTCTACCGGGGAACAGTCTGCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005198 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005886 GO:0006810 GO:0006897 GO:0006898 GO:0008150 GO:0012506 GO:0016020 GO:0016192 GO:0030117 GO:0030118 GO:0030120 GO:0030125 GO:0030135 GO:0030136 GO:0030276 GO:0030659 GO:0030662 GO:0030665 GO:0031090 GO:0031410 GO:0031982 GO:0032050 GO:0032991 GO:0043226 GO:0043227 GO:0043229 GO:0044422 GO:0044424 GO:0044425 GO:0044433 GO:0044444 GO:0044446 GO:0044464 GO:0048475 GO:0051179 GO:0051234 GO:0071944 GO:0072583 GO:0097708 GO:0098588 GO:0098657 GO:0098796 GO:0098805

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Clathrin_lg_ch

Protein Analysis

295

Amino Acids

31.2

Weight (kDa)

4.76

Isoelectric Point (pI)

45.95

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013811)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g04840
malus_domestica	MD05G1316400.v1.1 MD10G1296900.v1.1
prunus_persica	Prupe.4G043600_v2.0.a1
pyrus_communis	pycom10g24980
rosa_chinensis	RchiOBHm_Chr5g0008001
rosa_laevigata	RLG00000031526
rosa_multiflora	Rmu_co8429453.1_g000001 Rmu_co8446221.1_g000001 Rmu_sc0007348.1_g000005
rosa_roxburghii	Rroxscaffold_1G00068470
rosa_rugosa	Rorug04G0432300
rosa_samantha	Rh5AG060500 Rh5BG057300 Rh5CG067400 Rh5DG056500
rosa_wichuraiana	Rw5G006010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	652
AasI	GACNNNNNNGTC	1 cut(s)	80
Acc36I	ACCTGC	1 cut(s)	652
AccB1I	GGYRCC	1 cut(s)	787
AccB7I	CCANNNNNTGG	1 cut(s)	557
AccI	GTMKAC	1 cut(s)	149
AciI	CCGC	3 cut(s)	126, 161, 164
AclWI	GGATC	4 cut(s)	162, 182, 519, 778
AcuI	CTGAAG	3 cut(s)	626, 783, 816
AfaI	GTAC	1 cut(s)	110
AfiI	CCNNNNNNNGG	3 cut(s)	76, 140, 557
AgsI	TTSAA	2 cut(s)	579, 601
AjnI	CCWGG	2 cut(s)	69, 556
AloI	GAACNNNNNNTCC	2 cut(s)	367, 399
AluBI	AGCT	5 cut(s)	93, 458, 463, 604, 782
AluI	AGCT	5 cut(s)	93, 458, 463, 604, 782
Alw21I	GWGCWC	1 cut(s)	465
AlwI	GGATC	4 cut(s)	162, 182, 519, 778
AlwNI	CAGNNNCTG	2 cut(s)	782, 857
AoxI	GGCC	2 cut(s)	165, 224
ApeKI	GCWGC	3 cut(s)	325, 752, 794
AspS9I	GGNCC	3 cut(s)	224, 317, 548
AsuC2I	CCSGG	1 cut(s)	868
AsuII	TTCGAA	1 cut(s)	183
AvaII	GGWCC	2 cut(s)	317, 548
BanI	GGYRCC	1 cut(s)	787
BanII	GRGCYC	2 cut(s)	197, 465
BauI	CACGAG	1 cut(s)	473
BbsI	GAAGAC	1 cut(s)	752
Bbv12I	GWGCWC	1 cut(s)	465
BbvI	GCAGC	3 cut(s)	312, 764, 781
BccI	CCATC	3 cut(s)	290, 535, 662
BceAI	ACGGC	5 cut(s)	46, 118, 157, 202, 765
BcgI	CGANNNNNNTGC	2 cut(s)	325, 359
BciT130I	CCWGG	2 cut(s)	71, 558
BclI	TGATCA	1 cut(s)	406
BcnI	CCSGG	1 cut(s)	868
BfuAI	ACCTGC	1 cut(s)	652
BglI	GCCNNNNNGGC	1 cut(s)	223
BisI	GCNGC	5 cut(s)	162, 165, 326, 753, 795
BlpI	GCTNAGC	1 cut(s)	459
BlsI	GCNGC	5 cut(s)	163, 166, 327, 754, 796
Bme1390I	CCNGG	3 cut(s)	71, 558, 868
Bme18I	GGWCC	2 cut(s)	317, 548
BmgT120I	GGNCC	3 cut(s)	224, 317, 548
BmiI	GGNNCC	3 cut(s)	333, 549, 789
BmrFI	CCNGG	3 cut(s)	71, 558, 868
BpiI	GAAGAC	1 cut(s)	752
Bpu1102I	GCTNAGC	1 cut(s)	459
Bpu14I	TTCGAA	1 cut(s)	183
BpuMI	CCSGG	1 cut(s)	868
Bsa29I	ATCGAT	1 cut(s)	530
BsaJI	CCNNGG	1 cut(s)	867
BsaWI	WCCGGW	1 cut(s)	841
BsaXI	ACNNNNNCTCC	4 cut(s)	341, 367, 371, 397
Bsc4I	CCNNNNNNNGG	3 cut(s)	76, 140, 557
BseBI	CCWGG	2 cut(s)	71, 558
BseCI	ATCGAT	1 cut(s)	530
BseDI	CCNNGG	1 cut(s)	867
BseGI	GGATG	5 cut(s)	50, 588, 682, 709, 736
BseLI	CCNNNNNNNGG	3 cut(s)	76, 140, 557
BseMII	CTCAG	2 cut(s)	228, 450
BseRI	GAGGAG	1 cut(s)	391
BseXI	GCAGC	3 cut(s)	312, 764, 781
BshFI	GGCC	2 cut(s)	167, 226
BshNI	GGYRCC	1 cut(s)	787
BshVI	ATCGAT	1 cut(s)	530
BsiHKAI	GWGCWC	1 cut(s)	465
BsiSI	CCGG	5 cut(s)	123, 233, 329, 842, 867
BslI	CCNNNNNNNGG	3 cut(s)	76, 140, 557
BsmI	GAATGC	1 cut(s)	433
BsnI	GGCC	2 cut(s)	167, 226
Bsp119I	TTCGAA	1 cut(s)	183
Bsp1286I	GDGCHC	2 cut(s)	197, 465
Bsp143I	GATC	8 cut(s)	37, 154, 187, 406, 511, 531, 571, 770
Bsp1720I	GCTNAGC	1 cut(s)	459
BspACI	CCGC	3 cut(s)	126, 161, 164
BspANI	GGCC	2 cut(s)	167, 226
BspCNI	CTCAG	2 cut(s)	229, 451
BspDI	ATCGAT	1 cut(s)	530
BspLI	GGNNCC	3 cut(s)	333, 549, 789
BspMI	ACCTGC	1 cut(s)	652
BspPI	GGATC	4 cut(s)	162, 182, 519, 778
BspQI	GCTCTTC	1 cut(s)	369
BspT104I	TTCGAA	1 cut(s)	183
BspT107I	GGYRCC	1 cut(s)	787
BssECI	CCNNGG	1 cut(s)	867
BssMI	GATC	8 cut(s)	37, 154, 187, 406, 511, 531, 571, 770
BssSI	CACGAG	1 cut(s)	473
Bst2BI	CACGAG	1 cut(s)	473
Bst2UI	CCWGG	2 cut(s)	71, 558
Bst4CI	ACNGT	5 cut(s)	59, 245, 317, 538, 876
Bst6I	CTCTTC	1 cut(s)	369
BstAPI	GCANNNNNTGC	2 cut(s)	686, 713
BstBI	TTCGAA	1 cut(s)	183
BstC8I	GCNNGC	3 cut(s)	128, 228, 792
BstDEI	CTNAG	2 cut(s)	237, 459
BstF5I	GGATG	5 cut(s)	50, 588, 682, 709, 736
BstKTI	GATC	8 cut(s)	40, 157, 190, 409, 514, 534, 574, 773
BstMBI	GATC	8 cut(s)	37, 154, 187, 406, 511, 531, 571, 770
BstMWI	GCNNNNNNNGC	8 cut(s)	30, 223, 331, 659, 686, 713, 803, 812
BstNI	CCWGG	2 cut(s)	71, 558
BstSCI	CCNGG	3 cut(s)	69, 556, 866
BstV1I	GCAGC	3 cut(s)	312, 764, 781
BstV2I	GAAGAC	1 cut(s)	752
BstX2I	RGATCY	1 cut(s)	187
BstYI	RGATCY	1 cut(s)	187
Bsu15I	ATCGAT	1 cut(s)	530
BsuRI	GGCC	2 cut(s)	167, 226
BsuTUI	ATCGAT	1 cut(s)	530
BtsCI	GGATG	5 cut(s)	50, 588, 682, 709, 736
BtsIMutI	CAGTG	1 cut(s)	567
BveI	ACCTGC	1 cut(s)	652
Cac8I	GCNNGC	3 cut(s)	128, 228, 792
CaiI	CAGNNNCTG	2 cut(s)	782, 857
Cfr13I	GGNCC	3 cut(s)	224, 317, 548
ClaI	ATCGAT	1 cut(s)	530
CseI	GACGC	1 cut(s)	23
Csp6I	GTAC	1 cut(s)	109
CviAII	CATG	1 cut(s)	628
CviQI	GTAC	1 cut(s)	109
DdeI	CTNAG	2 cut(s)	237, 459
DpnI	GATC	8 cut(s)	39, 156, 189, 408, 513, 533, 573, 772
DpnII	GATC	8 cut(s)	37, 154, 187, 406, 511, 531, 571, 770
DrdI	GACNNNNNNGTC	1 cut(s)	80
DseDI	GACNNNNNNGTC	1 cut(s)	80
Eam1104I	CTCTTC	1 cut(s)	369
EarI	CTCTTC	1 cut(s)	369
Ecl136II	GAGCTC	1 cut(s)	463
Eco24I	GRGCYC	2 cut(s)	197, 465
Eco47I	GGWCC	2 cut(s)	317, 548
Eco53kI	GAGCTC	1 cut(s)	463
Eco57I	CTGAAG	3 cut(s)	626, 783, 816
EcoICRI	GAGCTC	1 cut(s)	463
EcoRII	CCWGG	2 cut(s)	69, 556
EcoT38I	GRGCYC	2 cut(s)	197, 465
FaeI	CATG	1 cut(s)	631
FaiI	YATR	4 cut(s)	255, 391, 612, 629
FatI	CATG	1 cut(s)	627
FauI	CCCGC	1 cut(s)	119
FbaI	TGATCA	1 cut(s)	406
FblI	GTMKAC	1 cut(s)	149
Fnu4HI	GCNGC	5 cut(s)	162, 165, 326, 753, 795
FokI	GGATG	5 cut(s)	37, 595, 689, 716, 743
FriOI	GRGCYC	2 cut(s)	197, 465
Fsp4HI	GCNGC	5 cut(s)	162, 165, 326, 753, 795
GluI	GCNGC	5 cut(s)	162, 165, 326, 753, 795
HaeIII	GGCC	2 cut(s)	167, 226
HapII	CCGG	5 cut(s)	123, 233, 329, 842, 867
HgaI	GACGC	1 cut(s)	23
Hin1II	CATG	1 cut(s)	631
HincII	GTYRAC	1 cut(s)	150
HindII	GTYRAC	1 cut(s)	150
HinfI	GANTC	6 cut(s)	180, 258, 273, 288, 478, 631
HpaII	CCGG	5 cut(s)	123, 233, 329, 842, 867
Hpy166II	GTNNAC	1 cut(s)	150
Hpy188I	TCNGA	6 cut(s)	115, 179, 192, 313, 802, 835
Hpy188III	TCNNGA	6 cut(s)	88, 368, 410, 473, 490, 515
Hpy8I	GTNNAC	1 cut(s)	150
Hpy99I	CGWCG	9 cut(s)	17, 32, 38, 86, 89, 154, 217, 296, 317
HpyAV	CCTTC	4 cut(s)	134, 347, 442, 502
HpyCH4III	ACNGT	5 cut(s)	59, 245, 317, 538, 876
HpyCH4V	TGCA	7 cut(s)	346, 431, 662, 680, 707, 734, 839
HpyF10VI	GCNNNNNNNGC	8 cut(s)	30, 223, 331, 659, 686, 713, 803, 812
HpyF3I	CTNAG	2 cut(s)	237, 459
Hsp92II	CATG	1 cut(s)	631
Ksp22I	TGATCA	1 cut(s)	406
Kzo9I	GATC	8 cut(s)	37, 154, 187, 406, 511, 531, 571, 770
LguI	GCTCTTC	1 cut(s)	369
LmnI	GCTCC	3 cut(s)	235, 331, 652
Lsp1109I	GCAGC	3 cut(s)	312, 764, 781
MalI	GATC	8 cut(s)	39, 156, 189, 408, 513, 533, 573, 772
MboI	GATC	8 cut(s)	37, 154, 187, 406, 511, 531, 571, 770
MboII	GAAGA	3 cut(s)	197, 356, 757
MflI	RGATCY	1 cut(s)	187
MhlI	GDGCHC	2 cut(s)	197, 465
MmeI	TCCRAC	3 cut(s)	78, 336, 425
MnlI	CCTC	9 cut(s)	58, 70, 178, 343, 369, 480, 494, 633, 829
MseI	TTAA	1 cut(s)	883
MslI	CAYNNNNRTG	1 cut(s)	426
MspI	CCGG	5 cut(s)	123, 233, 329, 842, 867
MspR9I	CCNGG	3 cut(s)	71, 558, 868
Mva1269I	GAATGC	1 cut(s)	433
MvaI	CCWGG	2 cut(s)	71, 558
MwoI	GCNNNNNNNGC	8 cut(s)	30, 223, 331, 659, 686, 713, 803, 812
NciI	CCSGG	1 cut(s)	868
NdeII	GATC	8 cut(s)	37, 154, 187, 406, 511, 531, 571, 770
NlaIII	CATG	1 cut(s)	631
NlaIV	GGNNCC	3 cut(s)	333, 549, 789
NmeAIII	GCCGAG	1 cut(s)	360
NspV	TTCGAA	1 cut(s)	183
PaqCI	CACCTGC	1 cut(s)	652
PciSI	GCTCTTC	1 cut(s)	369
PcsI	WCGNNNNNNNCGW	3 cut(s)	33, 81, 93
PctI	GAATGC	1 cut(s)	433
PfeI	GAWTC	6 cut(s)	180, 258, 273, 288, 478, 631
PflFI	GACNNNGTC	1 cut(s)	77
PflMI	CCANNNNNTGG	1 cut(s)	557
PkrI	GCNGC	5 cut(s)	163, 166, 327, 754, 796
Psp124BI	GAGCTC	1 cut(s)	465
Psp6I	CCWGG	2 cut(s)	69, 556
PspGI	CCWGG	2 cut(s)	69, 556
PspN4I	GGNNCC	3 cut(s)	333, 549, 789
PspPI	GGNCC	3 cut(s)	224, 317, 548
PstNI	CAGNNNCTG	2 cut(s)	782, 857
PsuI	RGATCY	1 cut(s)	187
PsyI	GACNNNGTC	1 cut(s)	77
RsaI	GTAC	1 cut(s)	110
RsaNI	GTAC	1 cut(s)	109
RseI	CAYNNNNRTG	1 cut(s)	426
SacI	GAGCTC	1 cut(s)	465
SalI	GTCGAC	1 cut(s)	148
SapI	GCTCTTC	1 cut(s)	369
SaqAI	TTAA	1 cut(s)	883
SatI	GCNGC	5 cut(s)	162, 165, 326, 753, 795
Sau3AI	GATC	8 cut(s)	37, 154, 187, 406, 511, 531, 571, 770
Sau96I	GGNCC	3 cut(s)	224, 317, 548
ScrFI	CCNGG	3 cut(s)	71, 558, 868
SduI	GDGCHC	2 cut(s)	197, 465
SetI	ASST	9 cut(s)	81, 95, 460, 465, 606, 625, 646, 784, 821
SfuI	TTCGAA	1 cut(s)	183
SinI	GGWCC	2 cut(s)	317, 548
SmiMI	CAYNNNNRTG	1 cut(s)	426
SsiI	CCGC	3 cut(s)	126, 161, 164
SstI	GAGCTC	1 cut(s)	465
StyD4I	CCNGG	3 cut(s)	69, 556, 866
TaaI	ACNGT	5 cut(s)	59, 245, 317, 538, 876
TaqI	TCGA	8 cut(s)	12, 27, 87, 149, 183, 291, 489, 530
TauI	GCSGC	2 cut(s)	164, 167
TfiI	GAWTC	6 cut(s)	180, 258, 273, 288, 478, 631
Tru1I	TTAA	1 cut(s)	883
Tru9I	TTAA	1 cut(s)	883
TscAI	CASTG	1 cut(s)	574
TseI	GCWGC	3 cut(s)	325, 752, 794
TspGWI	ACGGA	1 cut(s)	167
TspRI	CASTG	1 cut(s)	574
Tth111I	GACNNNGTC	1 cut(s)	77
Van91I	CCANNNNNTGG	1 cut(s)	557
VpaK11BI	GGWCC	2 cut(s)	317, 548
XmiI	GTMKAC	1 cut(s)	149

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.