Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0007348.1

Orthogroup ID

OG0013811

Physical Location & Seq

Genomic Coordinates Reverse (-)

22799 .. 25070

Gene Structure 2272 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0007348.1_g000005.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1014 bp

atggcctcgttcgacgctttcagcatcgacggcgacgatctcaacgcctcatccaaccgtccatttgaccaggacgaggtcgtcgtcgagagttacgactacgcctcctactctgacttctccggcgggcttcccgccgaaggagtgtcgacggatcaggcggcggcctcgccgttcggattcgaagatccgagcccgaactactctggctcgtcgccgttcggggctgctccggctgagaacggtaatggatatggaatcggcgagaatggaatcgacgatggagtttttgcttccgacggtcctgtgctgccggagccgagcgagatgcaggaggaagggtttgctcttcgtgagtggaggagtcaaaatgccattctgcttgaggggaaggaaaagagagagaaagaactgaggatccagattattgaagaagctgaggagttcaagcgcgcattctatgagaaaaggaagcttaatgttgagactaacaaggttcagaacagggaaaaggagaagttgttcttggctgatcaagagaacttccacaagaatgcagacaagcaaagttggaaggcaatagctgagctcattcctcacgagattcccaacattgagaaaaagagaggcaagaaggatcaggacaagaaaccatcgatcacggtcattcagggtccaaagcctggaaaacccactgatctttcaaggatgcgacaaatacttttgaagctgaagcatacaactccgcctcacatgattcctaaaccacctgctcctgctaaagatgcaaaagatggaaaggatgcaaaagatgccaagaatgtaaaggatgcaaaagatgccaaaaatgtaaaggatgcaaaagatgtgaagactgcagcatctaaaactaatggatctgcagaagctgcggtgcctgctgcttcagaaaccaaagatgccaccacctctaatggcacttcagatgcaccggaacaatcagttcctgtttctactgaggaacagtctgcttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005198 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005886 GO:0006810 GO:0006897 GO:0006898 GO:0008150 GO:0012506 GO:0016020 GO:0016192 GO:0030117 GO:0030118 GO:0030120 GO:0030125 GO:0030135 GO:0030136 GO:0030276 GO:0030659 GO:0030662 GO:0030665 GO:0031090 GO:0031410 GO:0031982 GO:0032050 GO:0032991 GO:0043226 GO:0043227 GO:0043229 GO:0044422 GO:0044424 GO:0044425 GO:0044433 GO:0044444 GO:0044446 GO:0044464 GO:0048475 GO:0051179 GO:0051234 GO:0071944 GO:0072583 GO:0097708 GO:0098588 GO:0098657 GO:0098796 GO:0098805

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Clathrin_lg_ch

Protein Analysis

337

Amino Acids

36.67

Weight (kDa)

5.03

Isoelectric Point (pI)

50.69

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013811)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g04840
malus_domestica	MD05G1316400.v1.1 MD10G1296900.v1.1
prunus_persica	Prupe.4G043600_v2.0.a1
pyrus_communis	pycom10g24980
rosa_chinensis	RchiOBHm_Chr5g0008001
rosa_laevigata	RLG00000031526
rosa_multiflora	Rmu_co8429453.1_g000001 Rmu_co8446221.1_g000001 Rmu_sc0007348.1_g000005
rosa_roxburghii	Rroxscaffold_1G00068470
rosa_rugosa	Rorug04G0432300
rosa_samantha	Rh5AG060500 Rh5BG057300 Rh5CG067400 Rh5DG056500
rosa_wichuraiana	Rw5G006010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	778
AasI	GACNNNNNNGTC	1 cut(s)	80
Acc36I	ACCTGC	1 cut(s)	778
AccB1I	GGYRCC	1 cut(s)	913
AccB7I	CCANNNNNTGG	1 cut(s)	683
AccI	GTMKAC	1 cut(s)	149
AccII	CGCG	1 cut(s)	453
AciI	CCGC	6 cut(s)	126, 135, 161, 164, 746, 911
AclWI	GGATC	6 cut(s)	162, 182, 412, 425, 645, 904
AcuI	CTGAAG	3 cut(s)	752, 909, 945
AfiI	CCNNNNNNNGG	3 cut(s)	76, 140, 683
AgsI	TTSAA	4 cut(s)	431, 448, 705, 727
AjnI	CCWGG	2 cut(s)	69, 682
AjuI	GAANNNNNNNTTGG	2 cut(s)	509, 541
AloI	GAACNNNNNNTCC	4 cut(s)	402, 434, 506, 538
AluBI	AGCT	6 cut(s)	437, 475, 584, 589, 730, 908
AluI	AGCT	6 cut(s)	437, 475, 584, 589, 730, 908
Alw21I	GWGCWC	1 cut(s)	591
Alw26I	GTCTC	1 cut(s)	479
AlwI	GGATC	6 cut(s)	162, 182, 412, 425, 645, 904
AlwNI	CAGNNNCTG	2 cut(s)	908, 986
AoxI	GGCC	2 cut(s)	3, 165
ApeKI	GCWGC	5 cut(s)	227, 310, 878, 908, 920
Asp700I	GAANNNNTTC	1 cut(s)	521
AspLEI	GCGC	2 cut(s)	453, 455
AspS9I	GGNCC	2 cut(s)	302, 674
AsuII	TTCGAA	1 cut(s)	183
AvaII	GGWCC	2 cut(s)	302, 674
BamHI	GGATCC	1 cut(s)	417
BanI	GGYRCC	1 cut(s)	913
BanII	GRGCYC	2 cut(s)	197, 591
BauI	CACGAG	1 cut(s)	599
BbsI	GAAGAC	1 cut(s)	878
Bbv12I	GWGCWC	1 cut(s)	591
BbvCI	CCTCAGC	1 cut(s)	438
BbvI	GCAGC	5 cut(s)	214, 297, 890, 895, 907
BccI	CCATC	3 cut(s)	275, 661, 788
BceAI	ACGGC	3 cut(s)	46, 157, 202
BcgI	CGANNNNNNTGC	2 cut(s)	310, 344
BciT130I	CCWGG	2 cut(s)	71, 684
BclI	TGATCA	1 cut(s)	532
BcoDI	GTCTC	1 cut(s)	479
BfmI	CTRYAG	2 cut(s)	876, 900
BfuAI	ACCTGC	1 cut(s)	778
BisI	GCNGC	7 cut(s)	162, 165, 228, 311, 879, 909, 921
BlpI	GCTNAGC	1 cut(s)	585
BlsI	GCNGC	7 cut(s)	163, 166, 229, 312, 880, 910, 922
Bme1390I	CCNGG	2 cut(s)	71, 684
Bme18I	GGWCC	2 cut(s)	302, 674
BmgT120I	GGNCC	2 cut(s)	302, 674
BmiI	GGNNCC	4 cut(s)	318, 419, 675, 915
BmrFI	CCNGG	2 cut(s)	71, 684
BpiI	GAAGAC	1 cut(s)	878
Bpu10I	CCTNAGC	1 cut(s)	438
Bpu1102I	GCTNAGC	1 cut(s)	585
Bpu14I	TTCGAA	1 cut(s)	183
BpuEI	CTTGAG	1 cut(s)	404
Bsa29I	ATCGAT	1 cut(s)	656
BsaWI	WCCGGW	1 cut(s)	970
BsaXI	ACNNNNNCTCC	6 cut(s)	89, 119, 326, 356, 506, 536
Bsc4I	CCNNNNNNNGG	3 cut(s)	76, 140, 683
BseBI	CCWGG	2 cut(s)	71, 684
BseCI	ATCGAT	1 cut(s)	656
BseGI	GGATG	5 cut(s)	50, 714, 808, 835, 862
BseLI	CCNNNNNNNGG	3 cut(s)	76, 140, 683
BseMII	CTCAG	5 cut(s)	228, 404, 429, 576, 987
BsePI	GCGCGC	1 cut(s)	451
BseRI	GAGGAG	2 cut(s)	376, 455
BseXI	GCAGC	5 cut(s)	214, 297, 890, 895, 907
Bsh1236I	CGCG	1 cut(s)	453
BshFI	GGCC	2 cut(s)	5, 167
BshNI	GGYRCC	1 cut(s)	913
BshVI	ATCGAT	1 cut(s)	656
BsiHKAI	GWGCWC	1 cut(s)	591
BsiSI	CCGG	4 cut(s)	123, 233, 314, 971
BslI	CCNNNNNNNGG	3 cut(s)	76, 140, 683
BsmAI	GTCTC	1 cut(s)	479
BsmI	GAATGC	2 cut(s)	455, 559
BsnI	GGCC	2 cut(s)	5, 167
Bsp119I	TTCGAA	1 cut(s)	183
Bsp1286I	GDGCHC	2 cut(s)	197, 591
Bsp143I	GATC	9 cut(s)	37, 154, 187, 417, 532, 637, 657, 697, 896
Bsp1720I	GCTNAGC	1 cut(s)	585
BspACI	CCGC	6 cut(s)	126, 135, 161, 164, 746, 911
BspANI	GGCC	2 cut(s)	5, 167
BspCNI	CTCAG	5 cut(s)	229, 405, 430, 577, 988
BspDI	ATCGAT	1 cut(s)	656
BspFNI	CGCG	1 cut(s)	453
BspLI	GGNNCC	4 cut(s)	318, 419, 675, 915
BspMAI	CTGCAG	2 cut(s)	880, 904
BspMI	ACCTGC	1 cut(s)	778
BspPI	GGATC	6 cut(s)	162, 182, 412, 425, 645, 904
BspQI	GCTCTTC	1 cut(s)	354
BspT104I	TTCGAA	1 cut(s)	183
BspT107I	GGYRCC	1 cut(s)	913
BssHII	GCGCGC	1 cut(s)	451
BssMI	GATC	9 cut(s)	37, 154, 187, 417, 532, 637, 657, 697, 896
BssSI	CACGAG	1 cut(s)	599
Bst2BI	CACGAG	1 cut(s)	599
Bst2UI	CCWGG	2 cut(s)	71, 684
Bst4CI	ACNGT	5 cut(s)	59, 245, 302, 664, 1005
Bst6I	CTCTTC	1 cut(s)	354
BstAPI	GCANNNNNTGC	3 cut(s)	812, 839, 908
BstBI	TTCGAA	1 cut(s)	183
BstC8I	GCNNGC	3 cut(s)	128, 453, 918
BstDEI	CTNAG	5 cut(s)	237, 413, 438, 585, 996
BstF5I	GGATG	5 cut(s)	50, 714, 808, 835, 862
BstFNI	CGCG	1 cut(s)	453
BstHHI	GCGC	2 cut(s)	453, 455
BstKTI	GATC	9 cut(s)	40, 157, 190, 420, 535, 640, 660, 700, 899
BstMAI	GTCTC	1 cut(s)	479
BstMBI	GATC	9 cut(s)	37, 154, 187, 417, 532, 637, 657, 697, 896
BstMWI	GCNNNNNNNGC	8 cut(s)	30, 233, 316, 785, 812, 839, 908, 917
BstNI	CCWGG	2 cut(s)	71, 684
BstSCI	CCNGG	2 cut(s)	69, 682
BstSFI	CTRYAG	2 cut(s)	876, 900
BstUI	CGCG	1 cut(s)	453
BstV1I	GCAGC	5 cut(s)	214, 297, 890, 895, 907
BstV2I	GAAGAC	1 cut(s)	878
BstX2I	RGATCY	3 cut(s)	187, 417, 896
BstYI	RGATCY	3 cut(s)	187, 417, 896
Bsu15I	ATCGAT	1 cut(s)	656
BsuRI	GGCC	2 cut(s)	5, 167
BsuTUI	ATCGAT	1 cut(s)	656
BtsCI	GGATG	5 cut(s)	50, 714, 808, 835, 862
BtsIMutI	CAGTG	1 cut(s)	693
BveI	ACCTGC	1 cut(s)	778
Cac8I	GCNNGC	3 cut(s)	128, 453, 918
CaiI	CAGNNNCTG	2 cut(s)	908, 986
CfoI	GCGC	2 cut(s)	453, 455
Cfr13I	GGNCC	2 cut(s)	302, 674
ClaI	ATCGAT	1 cut(s)	656
CseI	GACGC	1 cut(s)	23
CviAII	CATG	1 cut(s)	754
DdeI	CTNAG	5 cut(s)	237, 413, 438, 585, 996
DpnI	GATC	9 cut(s)	39, 156, 189, 419, 534, 639, 659, 699, 898
DpnII	GATC	9 cut(s)	37, 154, 187, 417, 532, 637, 657, 697, 896
DrdI	GACNNNNNNGTC	1 cut(s)	80
DseDI	GACNNNNNNGTC	1 cut(s)	80
Eam1104I	CTCTTC	1 cut(s)	354
EarI	CTCTTC	1 cut(s)	354
EciI	GGCGGA	1 cut(s)	735
Ecl136II	GAGCTC	1 cut(s)	589
Eco24I	GRGCYC	2 cut(s)	197, 591
Eco47I	GGWCC	2 cut(s)	302, 674
Eco53kI	GAGCTC	1 cut(s)	589
Eco57I	CTGAAG	3 cut(s)	752, 909, 945
EcoICRI	GAGCTC	1 cut(s)	589
EcoRII	CCWGG	2 cut(s)	69, 682
EcoT38I	GRGCYC	2 cut(s)	197, 591
FaeI	CATG	1 cut(s)	757
FaiI	YATR	4 cut(s)	255, 462, 738, 755
FalI	AAGNNNNNCTT	2 cut(s)	509, 541
FatI	CATG	1 cut(s)	753
FauI	CCCGC	2 cut(s)	119, 142
FbaI	TGATCA	1 cut(s)	532
FblI	GTMKAC	1 cut(s)	149
Fnu4HI	GCNGC	7 cut(s)	162, 165, 228, 311, 879, 909, 921
FokI	GGATG	5 cut(s)	37, 721, 815, 842, 869
FriOI	GRGCYC	2 cut(s)	197, 591
Fsp4HI	GCNGC	7 cut(s)	162, 165, 228, 311, 879, 909, 921
GlaI	GCGC	2 cut(s)	452, 454
GluI	GCNGC	7 cut(s)	162, 165, 228, 311, 879, 909, 921
HaeIII	GGCC	2 cut(s)	5, 167
HapII	CCGG	4 cut(s)	123, 233, 314, 971
HgaI	GACGC	1 cut(s)	23
HhaI	GCGC	2 cut(s)	453, 455
Hin1II	CATG	1 cut(s)	757
Hin6I	GCGC	2 cut(s)	451, 453
HinP1I	GCGC	2 cut(s)	451, 453
HincII	GTYRAC	1 cut(s)	150
HindII	GTYRAC	1 cut(s)	150
HindIII	AAGCTT	1 cut(s)	473
HinfI	GANTC	6 cut(s)	180, 258, 273, 364, 604, 757
HpaII	CCGG	4 cut(s)	123, 233, 314, 971
Hpy166II	GTNNAC	1 cut(s)	150
Hpy188I	TCNGA	7 cut(s)	115, 179, 192, 298, 501, 928, 964
Hpy188III	TCNNGA	6 cut(s)	88, 353, 421, 536, 599, 641
Hpy8I	GTNNAC	1 cut(s)	150
Hpy99I	CGWCG	9 cut(s)	17, 32, 38, 86, 89, 154, 217, 281, 302
HpyAV	CCTTC	5 cut(s)	134, 332, 385, 568, 628
HpyCH4III	ACNGT	5 cut(s)	59, 245, 302, 664, 1005
HpyCH4V	TGCA	9 cut(s)	331, 557, 788, 806, 833, 860, 878, 902, 968
HpyF10VI	GCNNNNNNNGC	8 cut(s)	30, 233, 316, 785, 812, 839, 908, 917
HpyF3I	CTNAG	5 cut(s)	237, 413, 438, 585, 996
Hsp92II	CATG	1 cut(s)	757
HspAI	GCGC	2 cut(s)	451, 453
Ksp22I	TGATCA	1 cut(s)	532
Kzo9I	GATC	9 cut(s)	37, 154, 187, 417, 532, 637, 657, 697, 896
LguI	GCTCTTC	1 cut(s)	354
LmnI	GCTCC	3 cut(s)	235, 316, 778
Lsp1109I	GCAGC	5 cut(s)	214, 297, 890, 895, 907
MaeIII	GTNAC	1 cut(s)	92
MalI	GATC	9 cut(s)	39, 156, 189, 419, 534, 639, 659, 699, 898
MboI	GATC	9 cut(s)	37, 154, 187, 417, 532, 637, 657, 697, 896
MboII	GAAGA	4 cut(s)	197, 341, 443, 883
MflI	RGATCY	3 cut(s)	187, 417, 896
MhlI	GDGCHC	2 cut(s)	197, 591
MlyI	GAGTC	1 cut(s)	373
MmeI	TCCRAC	3 cut(s)	78, 321, 551
MroXI	GAANNNNTTC	1 cut(s)	521
MseI	TTAA	2 cut(s)	477, 1012
MslI	CAYNNNNRTG	1 cut(s)	552
MspI	CCGG	4 cut(s)	123, 233, 314, 971
MspR9I	CCNGG	2 cut(s)	71, 684
Mva1269I	GAATGC	2 cut(s)	455, 559
MvaI	CCWGG	2 cut(s)	71, 684
MvnI	CGCG	1 cut(s)	453
MwoI	GCNNNNNNNGC	8 cut(s)	30, 233, 316, 785, 812, 839, 908, 917
NdeII	GATC	9 cut(s)	37, 154, 187, 417, 532, 637, 657, 697, 896
NlaIII	CATG	1 cut(s)	757
NlaIV	GGNNCC	4 cut(s)	318, 419, 675, 915
NmeAIII	GCCGAG	1 cut(s)	345
NspV	TTCGAA	1 cut(s)	183
PaqCI	CACCTGC	1 cut(s)	778
PauI	GCGCGC	1 cut(s)	451
PciSI	GCTCTTC	1 cut(s)	354
PcsI	WCGNNNNNNNCGW	3 cut(s)	33, 81, 93
PctI	GAATGC	2 cut(s)	455, 559
PdmI	GAANNNNTTC	1 cut(s)	521
PfeI	GAWTC	5 cut(s)	180, 258, 273, 604, 757
PflFI	GACNNNGTC	1 cut(s)	77
PflMI	CCANNNNNTGG	1 cut(s)	683
PkrI	GCNGC	7 cut(s)	163, 166, 229, 312, 880, 910, 922
PleI	GAGTC	1 cut(s)	372
PpsI	GAGTC	1 cut(s)	372
Psp124BI	GAGCTC	1 cut(s)	591
Psp6I	CCWGG	2 cut(s)	69, 682
PspGI	CCWGG	2 cut(s)	69, 682
PspN4I	GGNNCC	4 cut(s)	318, 419, 675, 915
PspPI	GGNCC	2 cut(s)	302, 674
PstI	CTGCAG	2 cut(s)	880, 904
PstNI	CAGNNNCTG	2 cut(s)	908, 986
PsuI	RGATCY	3 cut(s)	187, 417, 896
PsyI	GACNNNGTC	1 cut(s)	77
PteI	GCGCGC	1 cut(s)	451
RseI	CAYNNNNRTG	1 cut(s)	552
SacI	GAGCTC	1 cut(s)	591
SalI	GTCGAC	1 cut(s)	148
SapI	GCTCTTC	1 cut(s)	354
SaqAI	TTAA	2 cut(s)	477, 1012
SatI	GCNGC	7 cut(s)	162, 165, 228, 311, 879, 909, 921
Sau3AI	GATC	9 cut(s)	37, 154, 187, 417, 532, 637, 657, 697, 896
Sau96I	GGNCC	2 cut(s)	302, 674
SchI	GAGTC	1 cut(s)	373
ScrFI	CCNGG	2 cut(s)	71, 684
SduI	GDGCHC	2 cut(s)	197, 591
SfcI	CTRYAG	2 cut(s)	876, 900
SfuI	TTCGAA	1 cut(s)	183
SinI	GGWCC	2 cut(s)	302, 674
SmiMI	CAYNNNNRTG	1 cut(s)	552
SmlI	CTYRAG	1 cut(s)	383
SmoI	CTYRAG	1 cut(s)	383
SsiI	CCGC	6 cut(s)	126, 135, 161, 164, 746, 911
SstI	GAGCTC	1 cut(s)	591
StyD4I	CCNGG	2 cut(s)	69, 682
TaaI	ACNGT	5 cut(s)	59, 245, 302, 664, 1005
TaqI	TCGA	7 cut(s)	12, 27, 87, 149, 183, 276, 656
TauI	GCSGC	2 cut(s)	164, 167
TfiI	GAWTC	5 cut(s)	180, 258, 273, 604, 757
Tru1I	TTAA	2 cut(s)	477, 1012
Tru9I	TTAA	2 cut(s)	477, 1012
TscAI	CASTG	1 cut(s)	700
TseI	GCWGC	5 cut(s)	227, 310, 878, 908, 920
TspGWI	ACGGA	1 cut(s)	167
TspRI	CASTG	1 cut(s)	700
Tth111I	GACNNNGTC	1 cut(s)	77
Van91I	CCANNNNNTGG	1 cut(s)	683
VpaK11BI	GGWCC	2 cut(s)	302, 674
XmiI	GTMKAC	1 cut(s)	149
XmnI	GAANNNNTTC	1 cut(s)	521

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.