Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp04

Orthogroup ID

OG0007493

Physical Location & Seq

Genomic Coordinates Forward (+)

2170670 .. 2175702

Gene Structure 5033 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.4G045500.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1575 bp

ATGGAGGCCTCTGGTTTGAATGGGGCGTCAAATTTTGATGATGAGAAGGCGTTGAAGGGTTTGCTTGAAGCGTTTGGTGCTGCGTTTTCTCTTGATCAAATAGCTTCTGCTTATTGCAAGGCTGGGAAGAATGCTGGCGATGCTGCTGAAGCTCTGGCTATGTCTACACCTAATGGTGAGGCAAAGCCAAGGGGTGAAGAAGAATCTTCACGATTATCTCTCGGTAATAGCTCTAAGAAGCCATATCTATATCAAGCAAATGGGAATTCCAGAGCTTCAAAGCCCAAATATCGTGCTGTTTCAGGGGGCAGTGTTTCAAGCATTATTGGGAAACATTATGGGAAGAAAACACCATCAGCAGATGGGTCTTGTAATGCAACCAAACCCTTGAAGCTGGACTCTGAGGTGTTGCCAATGTCGGAAACTTGGGTGGAAAAGGCTGAGTCCAATCCTTCAAGGAATGATGGTCTCCACCAGGATATGGAAGATTTTCTATTCACTATGCTTGGAGATGGATTCAAGCTAGAAAGAGAGAGGATTCGAGAAGTTCTTGATAGTTGCGGACATGATATGGAAAAGAGCATGGAAAAGTTGATTAATTTGCCAGCATCAACATCTGACAAAAGGAACGGACTCGTTGCTAGATCCAGTGATAAGTCTGCAGGTTTGTATCAGAAATCTGAAGTATCTTCTGAGAGAAAGTGCATAAACTCCTCTGAAGGTAATGGAGATAAGGCTTCAAATACAAATGGCGTGGACTTTACGGGACAAAAAAAAGAGAGAAGTGATCTCCAGAAGGAAGTTCTGGCTGCTTTGTTCAGTGCTTCTGAGAAATCCGAGGAGAGACCTGAGGAGCTACCAAGAAGAACAATAAAGGCAGCAAATAGATATGGAGCATATGGACAATTAGTTGTTGAACCTCCAAATGATTTCATTTCAGAGTGCAAATCTGTTGTGTATCAACAGCATCCTAAGGAGGATGGTATGCAACCTTGTCTATATGGGGGAAACTTCATTTCCCTTGTTTTTTTTAGGAGAGCAATGTTGGGATCAGTTTGTATGGTAAATGATGCAGATGACGAAGATGACTACCAGGTTCTTCGTAAAGCTGTGAAGGAGTATCGGACTACGATGAAGGAATATTTCCAGGCTGCTGTAGAGGCATTTTCTAAGAAGGATCATGATCGAGCAAACAAACTTCTAGAACAAGGAAAATTTTTCCAAGAAAAGGCACGCGAAGCGGATGAAGAGTCAAATGAAATGATTCTAAGAACAAGAAACGTTGAGACACAAGGTGAAATAGTGCTTGACTTGCATGAACGCAGTGCCAAGGAGGCAATACGTCTTTTGAAGTGTCAAATTTCTTCATTTTCTGGAATCTCATCAATCAAGTGTCTTAAGGTCATCATTGATACACAAGAGGAAGAGATCTCAAAAGGATCTCGTAGACGAGTATTGGTTTTGAAGCTACTGCAGGAAGAATCGATTAAGTGGACTGAAGGGGAAAAGGCCGGAACAATACTAATCCAATTAGACAATATTAATCGGAAACGTTTAACTTTCATTAAAAAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF1771

Protein Analysis

525

Amino Acids

58.18

Weight (kDa)

6.43

Isoelectric Point (pI)

37.25

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007493)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g09380 FvH4_6g17870 FvH4_6g17870 FvH4_6g17870 FvH4_6g17870 FvH4_6g17870 FvH4_6g17870 FvH4_6g17870 FvH4_6g17870
malus_domestica	MD00G1095600.v1.1 MD05G1314000.v1.1
prunus_persica	Prupe.4G045500_v2.0.a1 Prupe.4G045500_v2.0.a1
pyrus_communis	pycom05g29180 pycom10g24770
rosa_chinensis	RchiOBHm_Chr5g0008211
rosa_laevigata	RLG00000031549
rosa_roxburghii	Rroxscaffold_1G00068270
rosa_rugosa	Rorug04G0434300 Rorug04G0434400
rosa_samantha	Rh5AG062700 Rh5BG059000 Rh5CG069600 Rh5DG058600
rosa_wichuraiana	Rw5G005830

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	653
AccB7I	CCANNNNNTGG	1 cut(s)	481
AccI	GTMKAC	2 cut(s)	164, 1447
AccII	CGCG	1 cut(s)	1236
AciI	CCGC	2 cut(s)	561, 1241
AclI	AACGTT	2 cut(s)	1281, 1552
AclWI	GGATC	4 cut(s)	639, 1057, 1185, 1447
AcsI	RAATTY	4 cut(s)	31, 265, 1214, 1359
AcuI	CTGAAG	4 cut(s)	168, 702, 738, 1518
AcyI	GRCGYC	1 cut(s)	26
AdeI	CACNNNGTG	1 cut(s)	1295
AfiI	CCNNNNNNNGG	2 cut(s)	481, 1228
AflII	CTTAAG	1 cut(s)	1397
AjnI	CCWGG	3 cut(s)	474, 1092, 1146
AluBI	AGCT	9 cut(s)	104, 152, 231, 275, 394, 523, 856, 1109, 1468
AluI	AGCT	9 cut(s)	104, 152, 231, 275, 394, 523, 856, 1109, 1468
Alw26I	GTCTC	3 cut(s)	473, 838, 1280
AlwI	GGATC	4 cut(s)	639, 1057, 1185, 1447
AoxI	GGCC	2 cut(s)	6, 1509
ApeKI	GCWGC	5 cut(s)	80, 143, 809, 878, 1151
ApoI	RAATTY	4 cut(s)	31, 265, 1214, 1359
AseI	ATTAAT	2 cut(s)	597, 1542
Asp700I	GAANNNNTTC	2 cut(s)	489, 1263
AsuHPI	GGTGA	3 cut(s)	188, 206, 1307
AxyI	CCTNAGG	2 cut(s)	849, 972
BbvI	GCAGC	5 cut(s)	67, 130, 796, 890, 1138
BccI	CCATC	5 cut(s)	356, 361, 458, 506, 974
BciT130I	CCWGG	3 cut(s)	476, 1094, 1148
BclI	TGATCA	1 cut(s)	94
BcoDI	GTCTC	3 cut(s)	473, 838, 1280
BfaI	CTAG	3 cut(s)	524, 642, 1202
BfmI	CTRYAG	3 cut(s)	660, 1155, 1472
BfrI	CTTAAG	1 cut(s)	1397
BfuAI	ACCTGC	1 cut(s)	653
BglI	GCCNNNNNGGC	1 cut(s)	1334
BglII	AGATCT	1 cut(s)	1428
BisI	GCNGC	5 cut(s)	81, 144, 810, 879, 1152
BlsI	GCNGC	5 cut(s)	82, 145, 811, 880, 1153
Bme1390I	CCNGG	3 cut(s)	476, 1094, 1148
BmrFI	CCNGG	3 cut(s)	476, 1094, 1148
BmsI	GCATC	4 cut(s)	130, 617, 976, 1060
BpmI	CTGGAG	1 cut(s)	776
Bsa29I	ATCGAT	1 cut(s)	1484
BsaBI	GATNNNNATC	1 cut(s)	1182
BsaHI	GRCGYC	1 cut(s)	26
BsaI	GGTCTC	2 cut(s)	473, 838
BsaJI	CCNNGG	3 cut(s)	188, 837, 1329
Bsc4I	CCNNNNNNNGG	2 cut(s)	481, 1228
Bse1I	ACTGG	1 cut(s)	648
Bse21I	CCTNAGG	2 cut(s)	849, 972
Bse3DI	GCAATG	1 cut(s)	1047
Bse8I	GATNNNNATC	1 cut(s)	1182
BseBI	CCWGG	3 cut(s)	476, 1094, 1148
BseCI	ATCGAT	1 cut(s)	1484
BseDI	CCNNGG	3 cut(s)	188, 837, 1329
BseGI	GGATG	3 cut(s)	967, 985, 1249
BseJI	GATNNNNATC	1 cut(s)	1182
BseLI	CCNNNNNNNGG	2 cut(s)	481, 1228
BseMI	GCAATG	1 cut(s)	1047
BseMII	CTCAG	5 cut(s)	393, 432, 684, 819, 840
BseNI	ACTGG	1 cut(s)	648
BseRI	GAGGAG	3 cut(s)	703, 854, 866
BseXI	GCAGC	5 cut(s)	67, 130, 796, 890, 1138
BseYI	CCCAGC	1 cut(s)	122
Bsh1236I	CGCG	1 cut(s)	1236
BshFI	GGCC	2 cut(s)	8, 1511
BshVI	ATCGAT	1 cut(s)	1484
BsiSI	CCGG	1 cut(s)	1512
BslFI	GGGAC	1 cut(s)	780
BslI	CCNNNNNNNGG	2 cut(s)	481, 1228
BsmAI	GTCTC	3 cut(s)	473, 838, 1280
BsmFI	GGGAC	1 cut(s)	780
BsmI	GAATGC	1 cut(s)	136
BsnI	GGCC	2 cut(s)	8, 1511
Bso31I	GGTCTC	2 cut(s)	473, 838
Bsp143I	GATC	8 cut(s)	94, 644, 787, 1049, 1177, 1183, 1428, 1439
BspACI	CCGC	2 cut(s)	561, 1241
BspANI	GGCC	2 cut(s)	8, 1511
BspCNI	CTCAG	5 cut(s)	394, 433, 685, 820, 841
BspDI	ATCGAT	1 cut(s)	1484
BspFNI	CGCG	1 cut(s)	1236
BspHI	TCATGA	1 cut(s)	1180
BspMAI	CTGCAG	2 cut(s)	664, 1476
BspMI	ACCTGC	1 cut(s)	653
BspPI	GGATC	4 cut(s)	639, 1057, 1185, 1447
BspTI	CTTAAG	1 cut(s)	1397
BspTNI	GGTCTC	2 cut(s)	473, 838
BsrDI	GCAATG	1 cut(s)	1047
BsrI	ACTGG	1 cut(s)	648
BssECI	CCNNGG	3 cut(s)	188, 837, 1329
BssMI	GATC	8 cut(s)	94, 644, 787, 1049, 1177, 1183, 1428, 1439
BssNI	GRCGYC	1 cut(s)	26
BssT1I	CCWWGG	2 cut(s)	188, 1329
Bst2UI	CCWGG	3 cut(s)	476, 1094, 1148
Bst6I	CTCTTC	2 cut(s)	1242, 1419
BstACI	GRCGYC	1 cut(s)	26
BstAFI	CTTAAG	1 cut(s)	1397
BstC8I	GCNNGC	3 cut(s)	136, 606, 1234
BstDEI	CTNAG	9 cut(s)	234, 402, 441, 693, 828, 849, 972, 1170, 1268
BstF5I	GGATG	3 cut(s)	967, 985, 1249
BstFNI	CGCG	1 cut(s)	1236
BstKTI	GATC	8 cut(s)	97, 647, 790, 1052, 1180, 1186, 1431, 1442
BstMAI	GTCTC	3 cut(s)	473, 838, 1280
BstMBI	GATC	8 cut(s)	94, 644, 787, 1049, 1177, 1183, 1428, 1439
BstMWI	GCNNNNNNNGC	7 cut(s)	77, 140, 149, 1160, 1238, 1312, 1334
BstNI	CCWGG	3 cut(s)	476, 1094, 1148
BstSCI	CCNGG	3 cut(s)	474, 1092, 1146
BstSFI	CTRYAG	3 cut(s)	660, 1155, 1472
BstUI	CGCG	1 cut(s)	1236
BstV1I	GCAGC	5 cut(s)	67, 130, 796, 890, 1138
BstX2I	RGATCY	3 cut(s)	644, 1428, 1439
BstYI	RGATCY	3 cut(s)	644, 1428, 1439
Bsu15I	ATCGAT	1 cut(s)	1484
Bsu36I	CCTNAGG	2 cut(s)	849, 972
BsuRI	GGCC	2 cut(s)	8, 1511
BsuTUI	ATCGAT	1 cut(s)	1484
BtgZI	GCGATG	1 cut(s)	153
BtsCI	GGATG	3 cut(s)	967, 985, 1249
BtsI	GCAGTG	2 cut(s)	316, 1330
BtsIMutI	CAGTG	4 cut(s)	316, 655, 826, 1330
BveI	ACCTGC	1 cut(s)	653
Cac8I	GCNNGC	3 cut(s)	136, 606, 1234
CciI	TCATGA	1 cut(s)	1180
ClaI	ATCGAT	1 cut(s)	1484
CseI	GACGC	1 cut(s)	15
CsiI	ACCWGGT	1 cut(s)	1092
CspCI	CAANNNNNGTGG	2 cut(s)	735, 770
CviAII	CATG	4 cut(s)	566, 583, 1181, 1316
DdeI	CTNAG	9 cut(s)	234, 402, 441, 693, 828, 849, 972, 1170, 1268
DpnI	GATC	8 cut(s)	96, 646, 789, 1051, 1179, 1185, 1430, 1441
DpnII	GATC	8 cut(s)	94, 644, 787, 1049, 1177, 1183, 1428, 1439
DraIII	CACNNNGTG	1 cut(s)	1295
Eam1104I	CTCTTC	2 cut(s)	1242, 1419
EarI	CTCTTC	2 cut(s)	1242, 1419
Eco130I	CCWWGG	2 cut(s)	188, 1329
Eco147I	AGGCCT	1 cut(s)	8
Eco31I	GGTCTC	2 cut(s)	473, 838
Eco57I	CTGAAG	4 cut(s)	168, 702, 738, 1518
Eco81I	CCTNAGG	2 cut(s)	849, 972
EcoRI	GAATTC	1 cut(s)	265
EcoRII	CCWGG	3 cut(s)	474, 1092, 1146
EcoT14I	CCWWGG	2 cut(s)	188, 1329
ErhI	CCWWGG	2 cut(s)	188, 1329
FaeI	CATG	4 cut(s)	569, 586, 1184, 1319
FaqI	GGGAC	1 cut(s)	780
FatI	CATG	4 cut(s)	565, 582, 1180, 1315
FauNDI	CATATG	1 cut(s)	898
FbaI	TGATCA	1 cut(s)	94
FblI	GTMKAC	2 cut(s)	164, 1447
Fnu4HI	GCNGC	5 cut(s)	81, 144, 810, 879, 1152
FokI	GGATG	3 cut(s)	954, 992, 1256
Fsp4HI	GCNGC	5 cut(s)	81, 144, 810, 879, 1152
FspBI	CTAG	3 cut(s)	524, 642, 1202
GluI	GCNGC	5 cut(s)	81, 144, 810, 879, 1152
GsaI	CCCAGC	1 cut(s)	126
GsuI	CTGGAG	1 cut(s)	776
HaeIII	GGCC	2 cut(s)	8, 1511
HapII	CCGG	1 cut(s)	1512
HgaI	GACGC	1 cut(s)	15
Hin1I	GRCGYC	1 cut(s)	26
Hin1II	CATG	4 cut(s)	569, 586, 1184, 1319
HpaII	CCGG	1 cut(s)	1512
HphI	GGTGA	3 cut(s)	188, 206, 1307
Hpy166II	GTNNAC	4 cut(s)	165, 757, 1448, 1494
Hpy188III	TCNNGA	9 cut(s)	92, 210, 270, 542, 551, 793, 1181, 1202, 1374
Hpy8I	GTNNAC	4 cut(s)	165, 757, 1448, 1494
HpyAV	CCTTC	9 cut(s)	40, 49, 462, 713, 790, 1108, 1129, 1168, 1493
HpyCH4IV	ACGT	3 cut(s)	1281, 1342, 1552
HpyCH4V	TGCA	9 cut(s)	117, 377, 662, 705, 945, 988, 1073, 1315, 1474
HpyF10VI	GCNNNNNNNGC	7 cut(s)	77, 140, 149, 1160, 1238, 1312, 1334
HpyF3I	CTNAG	9 cut(s)	234, 402, 441, 693, 828, 849, 972, 1170, 1268
HpySE526I	ACGT	3 cut(s)	1281, 1342, 1552
Hsp92I	GRCGYC	1 cut(s)	26
Hsp92II	CATG	4 cut(s)	569, 586, 1184, 1319
Ksp22I	TGATCA	1 cut(s)	94
Kzo9I	GATC	8 cut(s)	94, 644, 787, 1049, 1177, 1183, 1428, 1439
LmnI	GCTCC	2 cut(s)	853, 893
Lsp1109I	GCAGC	5 cut(s)	67, 130, 796, 890, 1138
LweI	GCATC	4 cut(s)	130, 617, 976, 1060
MabI	ACCWGGT	1 cut(s)	1092
MaeI	CTAG	3 cut(s)	524, 642, 1202
MaeII	ACGT	3 cut(s)	1281, 1342, 1552
MalI	GATC	8 cut(s)	96, 646, 789, 1051, 1179, 1185, 1430, 1441
MboI	GATC	8 cut(s)	94, 644, 787, 1049, 1177, 1183, 1428, 1439
MflI	RGATCY	3 cut(s)	644, 1428, 1439
MluCI	AATT	7 cut(s)	31, 265, 598, 905, 1214, 1359, 1529
MlyI	GAGTC	4 cut(s)	392, 452, 627, 1259
MmeI	TCCRAC	1 cut(s)	399
MroXI	GAANNNNTTC	2 cut(s)	489, 1263
MseI	TTAA	6 cut(s)	597, 1398, 1488, 1542, 1556, 1566
MspCI	CTTAAG	1 cut(s)	1397
MspI	CCGG	1 cut(s)	1512
MspR9I	CCNGG	3 cut(s)	476, 1094, 1148
Mva1269I	GAATGC	1 cut(s)	136
MvaI	CCWGG	3 cut(s)	476, 1094, 1148
MvnI	CGCG	1 cut(s)	1236
MwoI	GCNNNNNNNGC	7 cut(s)	77, 140, 149, 1160, 1238, 1312, 1334
NdeI	CATATG	1 cut(s)	898
NdeII	GATC	8 cut(s)	94, 644, 787, 1049, 1177, 1183, 1428, 1439
NlaIII	CATG	4 cut(s)	569, 586, 1184, 1319
PagI	TCATGA	1 cut(s)	1180
PceI	AGGCCT	1 cut(s)	8
PctI	GAATGC	1 cut(s)	136
PdmI	GAANNNNTTC	2 cut(s)	489, 1263
PfeI	GAWTC	6 cut(s)	203, 516, 538, 1264, 1377, 1481
PflMI	CCANNNNNTGG	1 cut(s)	481
PkrI	GCNGC	5 cut(s)	82, 145, 811, 880, 1153
PleI	GAGTC	4 cut(s)	392, 451, 627, 1258
PpsI	GAGTC	4 cut(s)	392, 451, 627, 1258
PshBI	ATTAAT	2 cut(s)	597, 1542
Psp1406I	AACGTT	2 cut(s)	1281, 1552
Psp6I	CCWGG	3 cut(s)	474, 1092, 1146
PspFI	CCCAGC	1 cut(s)	122
PspGI	CCWGG	3 cut(s)	474, 1092, 1146
PstI	CTGCAG	2 cut(s)	664, 1476
PsuI	RGATCY	3 cut(s)	644, 1428, 1439
SaqAI	TTAA	6 cut(s)	597, 1398, 1488, 1542, 1556, 1566
SatI	GCNGC	5 cut(s)	81, 144, 810, 879, 1152
Sau3AI	GATC	8 cut(s)	94, 644, 787, 1049, 1177, 1183, 1428, 1439
SchI	GAGTC	4 cut(s)	392, 452, 627, 1259
ScrFI	CCNGG	3 cut(s)	476, 1094, 1148
SexAI	ACCWGGT	1 cut(s)	1092
SfaNI	GCATC	4 cut(s)	130, 617, 976, 1060
SfcI	CTRYAG	3 cut(s)	660, 1155, 1472
SmlI	CTYRAG	1 cut(s)	1397
SmoI	CTYRAG	1 cut(s)	1397
Sse9I	AATT	7 cut(s)	31, 265, 598, 905, 1214, 1359, 1529
SseBI	AGGCCT	1 cut(s)	8
SsiI	CCGC	2 cut(s)	561, 1241
SspI	AATATT	2 cut(s)	1142, 1540
SspMI	CTAG	3 cut(s)	524, 642, 1202
StuI	AGGCCT	1 cut(s)	8
StyD4I	CCNGG	3 cut(s)	474, 1092, 1146
StyI	CCWWGG	2 cut(s)	188, 1329
TaiI	ACGT	3 cut(s)	1284, 1345, 1555
TaqI	TCGA	3 cut(s)	541, 1186, 1484
TasI	AATT	7 cut(s)	31, 265, 598, 905, 1214, 1359, 1529
TfiI	GAWTC	6 cut(s)	203, 516, 538, 1264, 1377, 1481
Tru1I	TTAA	6 cut(s)	597, 1398, 1488, 1542, 1556, 1566
Tru9I	TTAA	6 cut(s)	597, 1398, 1488, 1542, 1556, 1566
TscAI	CASTG	4 cut(s)	316, 655, 826, 1330
TseI	GCWGC	5 cut(s)	80, 143, 809, 878, 1151
TspDTI	ATGAA	8 cut(s)	922, 1003, 1148, 1260, 1272, 1332, 1356, 1552
TspGWI	ACGGA	1 cut(s)	645
TspRI	CASTG	4 cut(s)	316, 655, 826, 1330
Van91I	CCANNNNNTGG	1 cut(s)	481
Vha464I	CTTAAG	1 cut(s)	1397
VspI	ATTAAT	2 cut(s)	597, 1542
XapI	RAATTY	4 cut(s)	31, 265, 1214, 1359
XbaI	TCTAGA	1 cut(s)	1201
XmiI	GTMKAC	2 cut(s)	164, 1447
XmnI	GAANNNNTTC	2 cut(s)	489, 1263
XspI	CTAG	3 cut(s)	524, 642, 1202

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.