Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0007493

Physical Location & Seq

Genomic Coordinates Forward (+)

59247269 .. 59250753

Gene Structure 3485 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0434400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1068 bp

ATGGTGACGGCGATTCTGATTCAAGCTGGGAGTTTGGTACTAAACAAAGCCGCCATGTCGAAAGGGGTCAACAAATACACCATGATCGTCTACGCCAACGCTCTCTCCACCCTCCTTCTTCCTTCTGCCTTTGTCGTCCACAGACCATCAGAGCGACCTCCACTTACATTCTCTATATATACTCTGCAGATTGTTCTTGCTTGGCCTCTTTGGGTTGGTAGCCTAGCTCATAAATGTTCGGCCCAGATTTTTGCTTATATTGATGTAGACTATAGCTCTGCCACGCTTGGCACTGCCATGCTTAACCTCATCCCTGCATTCACTTTCTTACTTGCCATCATTTTCAGGATGGAAAATGTGTACTGGAAGAGGTCAAGTAGCCAAGCCAAAGTTCTGGGAACCATTGCATCAATCACAGGAGCTTTTGTTGTCACACTCTACAAAGGTCCATCAATCTTACTAGTTCCTAGTTCAGCCACTCAATTCCTCTTCTCACCTCAACATTCAAACTGGCTTGTGGGAGGACTTTTTCTTGTAGCTGACGCTTTTTTCACTTCTCTATGGTACGTTCTCCAGGCATCGATCCTTGAGCAGTACCCAGCAGTTGTGTTTATTGTGTTTTTCGAATGCTTATTCACCACCATTCAGTCTGCGGCGTTTACTTTAATTGCTATCAAAGATGCAAATGCATGGGCGCTAAGACAGGACATGAGGCTCATTGCTATTTTATACACCTTTAGTGACATGGTGCGTGTGGAAGGCTGGAGCTGTTTATTGCTCTATGTTCAAACCGCTTGCGATAATTTTTGGTGTCATCATGTGTTTCATCTTTTTGGGAGATTCAGTAGTCTACCTTGGGAGACACATGTGAATGCTCACACTCGATCATATTTTATGAATGATAATTTTAGAACTCGATGGTTTTCATGCAATTTGGTTGGTGCAGTTATAATTGTTACTGGGTTTTACGCTGTGATGTGGGGAAAGGCCAGAGAATTAGAGAAGCTGGATGATGAAGATCCCTCTAGTGTTGATCATAACAAGCTCCCTCTACTACAAAACAAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF1771

Protein Analysis

355

Amino Acids

39.97

Weight (kDa)

8.46

Isoelectric Point (pI)

43.87

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007493)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g09380 FvH4_6g17870 FvH4_6g17870 FvH4_6g17870 FvH4_6g17870 FvH4_6g17870 FvH4_6g17870 FvH4_6g17870 FvH4_6g17870
malus_domestica	MD00G1095600.v1.1 MD05G1314000.v1.1
prunus_persica	Prupe.4G045500_v2.0.a1 Prupe.4G045500_v2.0.a1
pyrus_communis	pycom05g29180 pycom10g24770
rosa_chinensis	RchiOBHm_Chr5g0008211
rosa_laevigata	RLG00000031549
rosa_roxburghii	Rroxscaffold_1G00068270
rosa_rugosa	Rorug04G0434300 Rorug04G0434400
rosa_samantha	Rh5AG062700 Rh5BG059000 Rh5CG069600 Rh5DG058600
rosa_wichuraiana	Rw5G005830

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	950
AccI	GTMKAC	3 cut(s)	90, 267, 850
AciI	CCGC	3 cut(s)	51, 653, 792
AclWI	GGATC	2 cut(s)	577, 1013
AfaI	GTAC	4 cut(s)	39, 362, 566, 596
AflIII	ACRYGT	1 cut(s)	865
AgsI	TTSAA	3 cut(s)	23, 507, 788
AhlI	ACTAGT	1 cut(s)	460
AjnI	CCWGG	1 cut(s)	573
AjuI	GAANNNNNNNTTGG	2 cut(s)	375, 407
AluBI	AGCT	8 cut(s)	26, 227, 276, 422, 539, 768, 1006, 1045
AluI	AGCT	8 cut(s)	26, 227, 276, 422, 539, 768, 1006, 1045
Alw26I	GTCTC	1 cut(s)	854
AlwI	GGATC	2 cut(s)	577, 1013
AoxI	GGCC	3 cut(s)	203, 240, 987
AspLEI	GCGC	1 cut(s)	697
AspS9I	GGNCC	2 cut(s)	241, 446
AsuHPI	GGTGA	3 cut(s)	16, 486, 628
AsuII	TTCGAA	1 cut(s)	624
AvaII	GGWCC	1 cut(s)	446
BccI	CCATC	5 cut(s)	154, 343, 344, 457, 912
BceAI	ACGGC	1 cut(s)	24
BciT130I	CCWGG	1 cut(s)	575
BclI	TGATCA	1 cut(s)	1033
BcoDI	GTCTC	1 cut(s)	854
BcuI	ACTAGT	1 cut(s)	460
BfaI	CTAG	4 cut(s)	224, 461, 468, 1026
BfmI	CTRYAG	2 cut(s)	185, 271
BfoI	RGCGCY	1 cut(s)	698
BisI	GCNGC	2 cut(s)	51, 654
BlsI	GCNGC	2 cut(s)	52, 655
Bme1390I	CCNGG	1 cut(s)	575
Bme18I	GGWCC	1 cut(s)	446
BmgT120I	GGNCC	2 cut(s)	241, 446
BmiI	GGNNCC	1 cut(s)	400
BmrFI	CCNGG	1 cut(s)	575
BmrI	ACTGGG	1 cut(s)	969
BmsI	GCATC	3 cut(s)	416, 587, 670
BmuI	ACTGGG	1 cut(s)	969
BpmI	CTGGAG	2 cut(s)	557, 784
Bpu14I	TTCGAA	1 cut(s)	624
BpuEI	CTTGAG	1 cut(s)	608
Bsa29I	ATCGAT	1 cut(s)	581
BsaBI	GATNNNNATC	1 cut(s)	1017
BsaJI	CCNNGG	1 cut(s)	854
BsaXI	ACNNNNNCTCC	6 cut(s)	89, 119, 411, 441, 829, 859
Bse1I	ACTGG	3 cut(s)	368, 515, 964
Bse3DI	GCAATG	2 cut(s)	402, 717
Bse8I	GATNNNNATC	1 cut(s)	1017
BseBI	CCWGG	1 cut(s)	575
BseCI	ATCGAT	1 cut(s)	581
BseDI	CCNNGG	1 cut(s)	854
BseGI	GGATG	3 cut(s)	309, 354, 1015
BseJI	GATNNNNATC	1 cut(s)	1017
BseMI	GCAATG	2 cut(s)	402, 717
BseNI	ACTGG	3 cut(s)	368, 515, 964
BseYI	CCCAGC	2 cut(s)	26, 598
BsgI	GTGCAG	1 cut(s)	963
BshFI	GGCC	3 cut(s)	205, 242, 989
BshVI	ATCGAT	1 cut(s)	581
BsmAI	GTCTC	1 cut(s)	854
BsmI	GAATGC	3 cut(s)	317, 632, 877
BsnI	GGCC	3 cut(s)	205, 242, 989
Bsp119I	TTCGAA	1 cut(s)	624
Bsp143I	GATC	5 cut(s)	84, 582, 884, 1018, 1033
BspACI	CCGC	3 cut(s)	51, 653, 792
BspANI	GGCC	3 cut(s)	205, 242, 989
BspDI	ATCGAT	1 cut(s)	581
BspLI	GGNNCC	1 cut(s)	400
BspMAI	CTGCAG	1 cut(s)	189
BspPI	GGATC	2 cut(s)	577, 1013
BspT104I	TTCGAA	1 cut(s)	624
BsrDI	GCAATG	2 cut(s)	402, 717
BsrI	ACTGG	3 cut(s)	368, 515, 964
BssECI	CCNNGG	1 cut(s)	854
BssMI	GATC	5 cut(s)	84, 582, 884, 1018, 1033
BssT1I	CCWWGG	1 cut(s)	854
Bst2UI	CCWGG	1 cut(s)	575
Bst6I	CTCTTC	2 cut(s)	362, 494
BstBI	TTCGAA	1 cut(s)	624
BstC8I	GCNNGC	1 cut(s)	796
BstDEI	CTNAG	1 cut(s)	698
BstF5I	GGATG	3 cut(s)	309, 354, 1015
BstH2I	RGCGCY	1 cut(s)	698
BstHHI	GCGC	1 cut(s)	697
BstKTI	GATC	5 cut(s)	87, 585, 887, 1021, 1036
BstMAI	GTCTC	1 cut(s)	854
BstMBI	GATC	5 cut(s)	84, 582, 884, 1018, 1033
BstNI	CCWGG	1 cut(s)	575
BstNSI	RCATGY	1 cut(s)	869
BstSCI	CCNGG	1 cut(s)	573
BstSFI	CTRYAG	2 cut(s)	185, 271
BstX2I	RGATCY	1 cut(s)	1018
BstXI	CCANNNNNNTGG	1 cut(s)	394
BstYI	RGATCY	1 cut(s)	1018
Bsu15I	ATCGAT	1 cut(s)	581
BsuRI	GGCC	3 cut(s)	205, 242, 989
BsuTUI	ATCGAT	1 cut(s)	581
BtsCI	GGATG	3 cut(s)	309, 354, 1015
BtsI	GCAGTG	1 cut(s)	291
BtsIMutI	CAGTG	1 cut(s)	291
Cac8I	GCNNGC	1 cut(s)	796
CfoI	GCGC	1 cut(s)	697
Cfr13I	GGNCC	2 cut(s)	241, 446
ClaI	ATCGAT	1 cut(s)	581
CseI	GACGC	1 cut(s)	551
Csp6I	GTAC	4 cut(s)	38, 361, 565, 595
CviAII	CATG	9 cut(s)	55, 82, 298, 690, 709, 745, 818, 866, 927
CviQI	GTAC	4 cut(s)	38, 361, 565, 595
DdeI	CTNAG	1 cut(s)	698
DpnI	GATC	5 cut(s)	86, 584, 886, 1020, 1035
DpnII	GATC	5 cut(s)	84, 582, 884, 1018, 1033
Eam1104I	CTCTTC	2 cut(s)	362, 494
EarI	CTCTTC	2 cut(s)	362, 494
Eco130I	CCWWGG	1 cut(s)	854
Eco47I	GGWCC	1 cut(s)	446
EcoRII	CCWGG	1 cut(s)	573
EcoT14I	CCWWGG	1 cut(s)	854
EcoT22I	ATGCAT	1 cut(s)	691
ErhI	CCWWGG	1 cut(s)	854
FaeI	CATG	9 cut(s)	58, 85, 301, 693, 712, 748, 821, 869, 930
FatI	CATG	9 cut(s)	54, 81, 297, 689, 708, 744, 817, 865, 926
FbaI	TGATCA	1 cut(s)	1033
FblI	GTMKAC	3 cut(s)	90, 267, 850
Fnu4HI	GCNGC	2 cut(s)	51, 654
FokI	GGATG	3 cut(s)	296, 361, 1022
Fsp4HI	GCNGC	2 cut(s)	51, 654
FspBI	CTAG	4 cut(s)	224, 461, 468, 1026
GlaI	GCGC	1 cut(s)	696
GluI	GCNGC	2 cut(s)	51, 654
GsaI	CCCAGC	2 cut(s)	30, 602
GsuI	CTGGAG	2 cut(s)	557, 784
HaeII	RGCGCY	1 cut(s)	698
HaeIII	GGCC	3 cut(s)	205, 242, 989
HgaI	GACGC	1 cut(s)	551
HhaI	GCGC	1 cut(s)	697
Hin1II	CATG	9 cut(s)	58, 85, 301, 693, 712, 748, 821, 869, 930
Hin6I	GCGC	1 cut(s)	695
HinP1I	GCGC	1 cut(s)	695
HincII	GTYRAC	1 cut(s)	70
HindII	GTYRAC	1 cut(s)	70
HinfI	GANTC	3 cut(s)	13, 19, 840
HphI	GGTGA	3 cut(s)	16, 486, 628
Hpy166II	GTNNAC	7 cut(s)	70, 91, 139, 268, 361, 660, 851
Hpy188I	TCNGA	2 cut(s)	18, 151
Hpy188III	TCNNGA	1 cut(s)	346
Hpy8I	GTNNAC	7 cut(s)	70, 91, 139, 268, 361, 660, 851
HpyAV	CCTTC	3 cut(s)	125, 132, 752
HpyCH4IV	ACGT	1 cut(s)	567
HpyCH4V	TGCA	7 cut(s)	187, 317, 407, 683, 689, 930, 944
HpyF3I	CTNAG	1 cut(s)	698
HpySE526I	ACGT	1 cut(s)	567
Hsp92II	CATG	9 cut(s)	58, 85, 301, 693, 712, 748, 821, 869, 930
HspAI	GCGC	1 cut(s)	695
Ksp22I	TGATCA	1 cut(s)	1033
Kzo9I	GATC	5 cut(s)	84, 582, 884, 1018, 1033
LmnI	GCTCC	3 cut(s)	419, 765, 1050
LweI	GCATC	3 cut(s)	416, 587, 670
MaeI	CTAG	4 cut(s)	224, 461, 468, 1026
MaeII	ACGT	1 cut(s)	567
MaeIII	GTNAC	4 cut(s)	4, 430, 740, 955
MalI	GATC	5 cut(s)	86, 584, 886, 1020, 1035
MboI	GATC	5 cut(s)	84, 582, 884, 1018, 1033
MboII	GAAGA	4 cut(s)	110, 379, 481, 1028
MflI	RGATCY	1 cut(s)	1018
MluCI	AATT	7 cut(s)	482, 666, 802, 904, 931, 951, 995
Mph1103I	ATGCAT	1 cut(s)	691
MseI	TTAA	2 cut(s)	303, 665
MslI	CAYNNNNRTG	2 cut(s)	296, 870
MspR9I	CCNGG	1 cut(s)	575
Mva1269I	GAATGC	3 cut(s)	317, 632, 877
MvaI	CCWGG	1 cut(s)	575
NdeII	GATC	5 cut(s)	84, 582, 884, 1018, 1033
NlaIII	CATG	9 cut(s)	58, 85, 301, 693, 712, 748, 821, 869, 930
NlaIV	GGNNCC	1 cut(s)	400
NmuCI	GTSAC	3 cut(s)	4, 430, 740
NsiI	ATGCAT	1 cut(s)	691
NspI	RCATGY	1 cut(s)	869
NspV	TTCGAA	1 cut(s)	624
PciI	ACATGT	1 cut(s)	865
PctI	GAATGC	3 cut(s)	317, 632, 877
PfeI	GAWTC	3 cut(s)	13, 19, 840
PkrI	GCNGC	2 cut(s)	52, 655
PscI	ACATGT	1 cut(s)	865
PsiI	TTATAA	1 cut(s)	950
Psp6I	CCWGG	1 cut(s)	573
PspFI	CCCAGC	2 cut(s)	26, 598
PspGI	CCWGG	1 cut(s)	573
PspN4I	GGNNCC	1 cut(s)	400
PspPI	GGNCC	2 cut(s)	241, 446
PstI	CTGCAG	1 cut(s)	189
PsuI	RGATCY	1 cut(s)	1018
RsaI	GTAC	4 cut(s)	39, 362, 566, 596
RsaNI	GTAC	4 cut(s)	38, 361, 565, 595
RseI	CAYNNNNRTG	2 cut(s)	296, 870
SaqAI	TTAA	2 cut(s)	303, 665
SatI	GCNGC	2 cut(s)	51, 654
Sau3AI	GATC	5 cut(s)	84, 582, 884, 1018, 1033
Sau96I	GGNCC	2 cut(s)	241, 446
ScrFI	CCNGG	1 cut(s)	575
SfaNI	GCATC	3 cut(s)	416, 587, 670
SfcI	CTRYAG	2 cut(s)	185, 271
SfuI	TTCGAA	1 cut(s)	624
SinI	GGWCC	1 cut(s)	446
SmiMI	CAYNNNNRTG	2 cut(s)	296, 870
SmlI	CTYRAG	1 cut(s)	587
SmoI	CTYRAG	1 cut(s)	587
SpeI	ACTAGT	1 cut(s)	460
Sse9I	AATT	7 cut(s)	482, 666, 802, 904, 931, 951, 995
SsiI	CCGC	3 cut(s)	51, 653, 792
SspMI	CTAG	4 cut(s)	224, 461, 468, 1026
StyD4I	CCNGG	1 cut(s)	573
StyI	CCWWGG	1 cut(s)	854
TaiI	ACGT	1 cut(s)	570
TaqI	TCGA	5 cut(s)	59, 581, 624, 883, 916
TasI	AATT	7 cut(s)	482, 666, 802, 904, 931, 951, 995
TatI	WGTACW	1 cut(s)	360
TauI	GCSGC	2 cut(s)	53, 656
TfiI	GAWTC	3 cut(s)	13, 19, 840
Tru1I	TTAA	2 cut(s)	303, 665
Tru9I	TTAA	2 cut(s)	303, 665
TscAI	CASTG	1 cut(s)	298
TseFI	GTSAC	3 cut(s)	4, 430, 740
Tsp45I	GTSAC	3 cut(s)	4, 430, 740
TspDTI	ATGAA	4 cut(s)	815, 911, 915, 1029
TspRI	CASTG	1 cut(s)	298
VpaK11BI	GGWCC	1 cut(s)	446
XceI	RCATGY	1 cut(s)	869
XmiI	GTMKAC	3 cut(s)	90, 267, 850
XspI	CTAG	4 cut(s)	224, 461, 468, 1026
Zsp2I	ATGCAT	1 cut(s)	691

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.