Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0007493

Physical Location & Seq

Genomic Coordinates Forward (+)

6085753 .. 6089881

Gene Structure 4129 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000031549

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1254 bp

ATGGAAGCTTCTGGTTTCAATGGCACCCCCAGATTCGACGACGAACAGGGCTTGAGGGTTTTGCTCGACGCCTTTGGCCCTGCGTTTTCCATTGAGGAAATCGCTTCGGCTTATTGCAAGGCCGGGAAGAACGCCGAGGCCGCCGCCGAGACTCTGGCTCTCTCCGCCACCAGCGGCGGCGAAGAATCGTCAGGAGTAGTATCGGATGATGGTGGGATTGGGAAGAAGGACAAAACGACGTCGGATAATGGGAGTGGGAATTCGAGGGTTGCGAAGACGAAGTATCGGTCGGTTTCAGTGGGGAGTGTTTCTGGTGTTATTGGGAAGCATTATGGGAACAAAACGACGTCGTCGGGTGGTAATGGAGGGAAGGGCTTGAGAGTGGACTCAAAGTCCAAGGTGTTGCCGATTCCGGAGAGCTGGGTGGAAAAGGCGGAGTCTCGTTCGTCTTCTGGGGATGATGTGCTTCACCAGGACATGGAGGATTTTCTGTTCAATATGCTTGGAGAGGGGTTCAAGCTCGATAGGGATGTGATTCGAGATGTTCTTGATAGTTGCGGATATGATATGGAAAAGAGCATGGAAAATCTGATCAGTTTGTCAACGTCAGCCTCGGATGAAAGAAACGAAGTCATCTCTAACTCCAATGATAAGGTCAACTATGGCCATTTGGTGCTTGAACCTCCAAAAGATTCCTTTTCAGATCACAAGACACCTGTGGTCTATCAACAGCATCATACTGAGGATGATGCAGATGATGAAGTTAGGTACCAGGTTCTCCGCAAAAGTGTGAAGGAGTATCGGAGTACGATGAAGGAGTATTACCAGGCAGCTGTAGACGCATTTTCTAAGGGAGATCGTGTTCGAGCAGACAAACTTATGGAACAGGGACATTTTTTCCAGAAAAAGGCACGCGAAGCAGATGAGGAGTCAAATAAAATGATCCTTAAACCTAGAGATGCTGAGACACAAGGGGATATAGTGCTTGACTTGCATGAAGGTGGTGCCAAGGAGGCAATACGTCTGCTGAAGTGTCATCTTTCTTCATTTTCTGGTATCTCATCAATCAAGCATCTTAAGGTCATTATTGATACAAAGGAGGGAGATATCCTGAAAGGATCTCGCAGACGATTAGCAGTTTTGAAGCTTCTGGAGGAAGAATCAATCAAGTGGGTTGAAGGAGACAATGCTGGAACAATACTAATCCAGTTGGATAGTATTAACCGAAAGAAGTTAACTTTTCTCAAAAAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF1771

Protein Analysis

418

Amino Acids

45.79

Weight (kDa)

5.62

Isoelectric Point (pI)

31.86

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
UBA_At5g58720	PF24767	15 - 53	8e-06	At5g58720 UBA-like domain
DUF1771	PF08590	257 - 318	1.9e-14	Domain of unknown function (DUF1771)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007493)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g09380 FvH4_6g17870 FvH4_6g17870 FvH4_6g17870 FvH4_6g17870 FvH4_6g17870 FvH4_6g17870 FvH4_6g17870 FvH4_6g17870
malus_domestica	MD00G1095600.v1.1 MD05G1314000.v1.1
prunus_persica	Prupe.4G045500_v2.0.a1 Prupe.4G045500_v2.0.a1
pyrus_communis	pycom05g29180 pycom10g24770
rosa_chinensis	RchiOBHm_Chr5g0008211
rosa_laevigata	RLG00000031549
rosa_roxburghii	Rroxscaffold_1G00068270
rosa_rugosa	Rorug04G0434300 Rorug04G0434400
rosa_samantha	Rh5AG062700 Rh5BG059000 Rh5CG069600 Rh5DG058600
rosa_wichuraiana	Rw5G005830

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	2 cut(s)	242, 350
Acc65I	GGTACC	1 cut(s)	768
AccB1I	GGYRCC	3 cut(s)	23, 768, 1004
AccB7I	CCANNNNNTGG	1 cut(s)	478
AccI	GTMKAC	1 cut(s)	837
AccII	CGCG	1 cut(s)	915
AccIII	TCCGGA	1 cut(s)	412
AciI	CCGC	8 cut(s)	141, 144, 165, 174, 177, 434, 558, 781
AclWI	GGATC	2 cut(s)	937, 1126
AcoI	YGGCCR	1 cut(s)	664
AcsI	RAATTY	1 cut(s)	259
AcuI	CTGAAG	1 cut(s)	1049
AcyI	GRCGYC	3 cut(s)	69, 239, 347
AfaI	GTAC	2 cut(s)	770, 808
AfiI	CCNNNNNNNGG	2 cut(s)	478, 907
AflII	CTTAAG	1 cut(s)	1076
AgsI	TTSAA	6 cut(s)	19, 496, 517, 680, 1144, 1178
AhdI	GACNNNNNGTC	1 cut(s)	391
AjnI	CCWGG	3 cut(s)	471, 771, 825
AloI	GAACNNNNNNTCC	4 cut(s)	476, 508, 846, 878
AluBI	AGCT	5 cut(s)	8, 420, 520, 833, 1147
AluI	AGCT	5 cut(s)	8, 420, 520, 833, 1147
Alw26I	GTCTC	4 cut(s)	143, 444, 959, 1176
AlwI	GGATC	2 cut(s)	937, 1126
Aor13HI	TCCGGA	1 cut(s)	412
AoxI	GGCC	4 cut(s)	76, 120, 138, 664
ApeKI	GCWGC	1 cut(s)	830
ApoI	RAATTY	1 cut(s)	259
ArsI	GACNNNNNNTTYG	2 cut(s)	272, 304
Asp718I	GGTACC	1 cut(s)	768
AspS9I	GGNCC	1 cut(s)	77
AsuC2I	CCSGG	1 cut(s)	124
AsuHPI	GGTGA	1 cut(s)	461
BalI	TGGCCA	1 cut(s)	666
BanI	GGYRCC	3 cut(s)	23, 768, 1004
BarI	GAAGNNNNNNTAC	2 cut(s)	806, 838
BbsI	GAAGAC	2 cut(s)	281, 441
BbvI	GCAGC	1 cut(s)	842
BccI	CCATC	1 cut(s)	203
BciT130I	CCWGG	3 cut(s)	473, 773, 827
BclI	TGATCA	1 cut(s)	591
BcnI	CCSGG	1 cut(s)	124
BcoDI	GTCTC	4 cut(s)	143, 444, 959, 1176
BfaI	CTAG	1 cut(s)	954
BfmI	CTRYAG	1 cut(s)	834
BfrI	CTTAAG	1 cut(s)	1076
BglI	GCCNNNNNGGC	1 cut(s)	1013
BisI	GCNGC	5 cut(s)	141, 144, 175, 178, 831
BlsI	GCNGC	5 cut(s)	142, 145, 176, 179, 832
Bme1390I	CCNGG	4 cut(s)	124, 473, 773, 827
BmeRI	GACNNNNNGTC	1 cut(s)	391
BmgT120I	GGNCC	1 cut(s)	77
BmiI	GGNNCC	3 cut(s)	25, 770, 1006
BmrFI	CCNGG	4 cut(s)	124, 473, 773, 827
BmsI	GCATC	4 cut(s)	739, 742, 949, 1081
BpiI	GAAGAC	2 cut(s)	281, 441
BpmI	CTGGAG	1 cut(s)	1172
BpuEI	CTTGAG	2 cut(s)	73, 397
BpuMI	CCSGG	1 cut(s)	124
BsaHI	GRCGYC	3 cut(s)	69, 239, 347
BsaJI	CCNNGG	4 cut(s)	135, 396, 612, 1008
BsaWI	WCCGGW	1 cut(s)	412
BsaXI	ACNNNNNCTCC	2 cut(s)	846, 876
Bsc4I	CCNNNNNNNGG	2 cut(s)	478, 907
Bse1I	ACTGG	1 cut(s)	1207
BseAI	TCCGGA	1 cut(s)	412
BseBI	CCWGG	3 cut(s)	473, 773, 827
BseDI	CCNNGG	4 cut(s)	135, 396, 612, 1008
BseGI	GGATG	5 cut(s)	211, 463, 535, 622, 751
BseLI	CCNNNNNNNGG	2 cut(s)	478, 907
BseMII	CTCAG	2 cut(s)	732, 954
BseNI	ACTGG	1 cut(s)	1207
BseRI	GAGGAG	1 cut(s)	941
BseXI	GCAGC	1 cut(s)	842
BseYI	CCCAGC	1 cut(s)	420
Bsh1236I	CGCG	1 cut(s)	915
Bsh1285I	CGRYCG	1 cut(s)	290
BshFI	GGCC	4 cut(s)	78, 122, 140, 666
BshNI	GGYRCC	3 cut(s)	23, 768, 1004
BsiEI	CGRYCG	1 cut(s)	290
BsiSI	CCGG	2 cut(s)	123, 413
BslFI	GGGAC	1 cut(s)	903
BslI	CCNNNNNNNGG	2 cut(s)	478, 907
BsmAI	GTCTC	4 cut(s)	143, 444, 959, 1176
BsmFI	GGGAC	1 cut(s)	903
BsnI	GGCC	4 cut(s)	78, 122, 140, 666
Bsp13I	TCCGGA	1 cut(s)	412
Bsp143I	GATC	5 cut(s)	591, 703, 856, 942, 1118
BspACI	CCGC	8 cut(s)	141, 144, 165, 174, 177, 434, 558, 781
BspANI	GGCC	4 cut(s)	78, 122, 140, 666
BspCNI	CTCAG	2 cut(s)	733, 955
BspEI	TCCGGA	1 cut(s)	412
BspFNI	CGCG	1 cut(s)	915
BspLI	GGNNCC	3 cut(s)	25, 770, 1006
BspPI	GGATC	2 cut(s)	937, 1126
BspT107I	GGYRCC	3 cut(s)	23, 768, 1004
BspTI	CTTAAG	1 cut(s)	1076
BsrI	ACTGG	1 cut(s)	1207
BssECI	CCNNGG	4 cut(s)	135, 396, 612, 1008
BssMI	GATC	5 cut(s)	591, 703, 856, 942, 1118
BssNI	GRCGYC	3 cut(s)	69, 239, 347
BssT1I	CCWWGG	2 cut(s)	396, 1008
Bst2UI	CCWGG	3 cut(s)	473, 773, 827
BstACI	GRCGYC	3 cut(s)	69, 239, 347
BstAFI	CTTAAG	1 cut(s)	1076
BstC8I	GCNNGC	1 cut(s)	913
BstDEI	CTNAG	3 cut(s)	741, 849, 963
BstF5I	GGATG	5 cut(s)	211, 463, 535, 622, 751
BstFNI	CGCG	1 cut(s)	915
BstKTI	GATC	5 cut(s)	594, 706, 859, 945, 1121
BstMAI	GTCTC	4 cut(s)	143, 444, 959, 1176
BstMBI	GATC	5 cut(s)	591, 703, 856, 942, 1118
BstMCI	CGRYCG	1 cut(s)	290
BstMWI	GCNNNNNNNGC	6 cut(s)	140, 164, 839, 917, 991, 1013
BstNI	CCWGG	3 cut(s)	473, 773, 827
BstSCI	CCNGG	4 cut(s)	122, 471, 771, 825
BstSFI	CTRYAG	1 cut(s)	834
BstUI	CGCG	1 cut(s)	915
BstV1I	GCAGC	1 cut(s)	842
BstV2I	GAAGAC	2 cut(s)	281, 441
BstX2I	RGATCY	1 cut(s)	1118
BstYI	RGATCY	1 cut(s)	1118
BsuRI	GGCC	4 cut(s)	78, 122, 140, 666
BtsCI	GGATG	5 cut(s)	211, 463, 535, 622, 751
BtsIMutI	CAGTG	1 cut(s)	303
Cac8I	GCNNGC	1 cut(s)	913
Cfr13I	GGNCC	1 cut(s)	77
CseI	GACGC	2 cut(s)	77, 848
CsiI	ACCWGGT	1 cut(s)	771
Csp6I	GTAC	2 cut(s)	769, 807
CviAII	CATG	3 cut(s)	478, 580, 995
CviQI	GTAC	2 cut(s)	769, 807
DdeI	CTNAG	3 cut(s)	741, 849, 963
DpnI	GATC	5 cut(s)	593, 705, 858, 944, 1120
DpnII	GATC	5 cut(s)	591, 703, 856, 942, 1118
DriI	GACNNNNNGTC	1 cut(s)	391
EaeI	YGGCCR	1 cut(s)	664
Eam1105I	GACNNNNNGTC	1 cut(s)	391
EciI	GGCGGA	2 cut(s)	154, 449
Eco130I	CCWWGG	2 cut(s)	396, 1008
Eco32I	GATATC	1 cut(s)	1108
Eco57I	CTGAAG	1 cut(s)	1049
EcoRI	GAATTC	1 cut(s)	259
EcoRII	CCWGG	3 cut(s)	471, 771, 825
EcoRV	GATATC	1 cut(s)	1108
EcoT14I	CCWWGG	2 cut(s)	396, 1008
ErhI	CCWWGG	2 cut(s)	396, 1008
FaeI	CATG	3 cut(s)	481, 583, 998
FaqI	GGGAC	1 cut(s)	903
FatI	CATG	3 cut(s)	477, 579, 994
FbaI	TGATCA	1 cut(s)	591
FblI	GTMKAC	1 cut(s)	837
Fnu4HI	GCNGC	5 cut(s)	141, 144, 175, 178, 831
FokI	GGATG	5 cut(s)	218, 470, 542, 629, 758
Fsp4HI	GCNGC	5 cut(s)	141, 144, 175, 178, 831
FspBI	CTAG	1 cut(s)	954
GluI	GCNGC	5 cut(s)	141, 144, 175, 178, 831
GsaI	CCCAGC	1 cut(s)	424
GsuI	CTGGAG	1 cut(s)	1172
HaeIII	GGCC	4 cut(s)	78, 122, 140, 666
HapII	CCGG	2 cut(s)	123, 413
HgaI	GACGC	2 cut(s)	77, 848
Hin1I	GRCGYC	3 cut(s)	69, 239, 347
Hin1II	CATG	3 cut(s)	481, 583, 998
HincII	GTYRAC	3 cut(s)	603, 658, 1236
HindII	GTYRAC	3 cut(s)	603, 658, 1236
HindIII	AAGCTT	2 cut(s)	6, 1145
HpaI	GTTAAC	1 cut(s)	1236
HpaII	CCGG	2 cut(s)	123, 413
HphI	GGTGA	1 cut(s)	461
Hpy166II	GTNNAC	5 cut(s)	385, 603, 658, 838, 1236
Hpy188I	TCNGA	6 cut(s)	205, 244, 591, 616, 703, 804
Hpy188III	TCNNGA	7 cut(s)	192, 413, 539, 548, 901, 1111, 1151
Hpy8I	GTNNAC	5 cut(s)	385, 603, 658, 838, 1236
Hpy99I	CGWCG	8 cut(s)	41, 44, 71, 241, 244, 349, 352, 355
HpyAV	CCTTC	6 cut(s)	220, 364, 787, 808, 992, 1172
HpyCH4IV	ACGT	4 cut(s)	239, 347, 605, 1021
HpyCH4V	TGCA	3 cut(s)	117, 752, 994
HpyF10VI	GCNNNNNNNGC	6 cut(s)	140, 164, 839, 917, 991, 1013
HpyF3I	CTNAG	3 cut(s)	741, 849, 963
HpySE526I	ACGT	4 cut(s)	239, 347, 605, 1021
Hsp92I	GRCGYC	3 cut(s)	69, 239, 347
Hsp92II	CATG	3 cut(s)	481, 583, 998
Kpn2I	TCCGGA	1 cut(s)	412
KpnI	GGTACC	1 cut(s)	772
Ksp22I	TGATCA	1 cut(s)	591
KspAI	GTTAAC	1 cut(s)	1236
Kzo9I	GATC	5 cut(s)	591, 703, 856, 942, 1118
Lsp1109I	GCAGC	1 cut(s)	842
LweI	GCATC	4 cut(s)	739, 742, 949, 1081
MabI	ACCWGGT	1 cut(s)	771
MaeI	CTAG	1 cut(s)	954
MaeII	ACGT	4 cut(s)	239, 347, 605, 1021
MalI	GATC	5 cut(s)	593, 705, 858, 944, 1120
MboI	GATC	5 cut(s)	591, 703, 856, 942, 1118
MboII	GAAGA	7 cut(s)	139, 194, 235, 286, 441, 1035, 1169
MflI	RGATCY	1 cut(s)	1118
MlsI	TGGCCA	1 cut(s)	666
MluCI	AATT	1 cut(s)	259
MluNI	TGGCCA	1 cut(s)	666
MlyI	GAGTC	4 cut(s)	145, 380, 446, 938
MmeI	TCCRAC	2 cut(s)	222, 1191
Mox20I	TGGCCA	1 cut(s)	666
MroI	TCCGGA	1 cut(s)	412
MscI	TGGCCA	1 cut(s)	666
MseI	TTAA	4 cut(s)	948, 1077, 1221, 1235
MslI	CAYNNNNRTG	1 cut(s)	999
Msp20I	TGGCCA	1 cut(s)	666
MspA1I	CMGCKG	2 cut(s)	174, 833
MspCI	CTTAAG	1 cut(s)	1076
MspI	CCGG	2 cut(s)	123, 413
MspR9I	CCNGG	4 cut(s)	124, 473, 773, 827
MvaI	CCWGG	3 cut(s)	473, 773, 827
MvnI	CGCG	1 cut(s)	915
MwoI	GCNNNNNNNGC	6 cut(s)	140, 164, 839, 917, 991, 1013
NciI	CCSGG	1 cut(s)	124
NdeII	GATC	5 cut(s)	591, 703, 856, 942, 1118
NlaIII	CATG	3 cut(s)	481, 583, 998
NlaIV	GGNNCC	3 cut(s)	25, 770, 1006
NmeAIII	GCCGAG	2 cut(s)	160, 172
PcsI	WCGNNNNNNNCGW	1 cut(s)	269
PfeI	GAWTC	6 cut(s)	33, 185, 409, 535, 692, 1160
PflFI	GACNNNGTC	1 cut(s)	349
PflMI	CCANNNNNTGG	1 cut(s)	478
PkrI	GCNGC	5 cut(s)	142, 145, 176, 179, 832
PleI	GAGTC	4 cut(s)	145, 380, 445, 937
PpsI	GAGTC	4 cut(s)	145, 380, 445, 937
Psp6I	CCWGG	3 cut(s)	471, 771, 825
PspFI	CCCAGC	1 cut(s)	420
PspGI	CCWGG	3 cut(s)	471, 771, 825
PspN4I	GGNNCC	3 cut(s)	25, 770, 1006
PspPI	GGNCC	1 cut(s)	77
PsuI	RGATCY	1 cut(s)	1118
PsyI	GACNNNGTC	1 cut(s)	349
PvuII	CAGCTG	1 cut(s)	833
RsaI	GTAC	2 cut(s)	770, 808
RsaNI	GTAC	2 cut(s)	769, 807
RseI	CAYNNNNRTG	1 cut(s)	999
SaqAI	TTAA	4 cut(s)	948, 1077, 1221, 1235
SatI	GCNGC	5 cut(s)	141, 144, 175, 178, 831
Sau3AI	GATC	5 cut(s)	591, 703, 856, 942, 1118
Sau96I	GGNCC	1 cut(s)	77
SchI	GAGTC	4 cut(s)	145, 380, 446, 938
ScrFI	CCNGG	4 cut(s)	124, 473, 773, 827
SexAI	ACCWGGT	1 cut(s)	771
SfaNI	GCATC	4 cut(s)	739, 742, 949, 1081
SfcI	CTRYAG	1 cut(s)	834
SmiMI	CAYNNNNRTG	1 cut(s)	999
SmlI	CTYRAG	3 cut(s)	52, 376, 1076
SmoI	CTYRAG	3 cut(s)	52, 376, 1076
Sse9I	AATT	1 cut(s)	259
SsiI	CCGC	8 cut(s)	141, 144, 165, 174, 177, 434, 558, 781
SspMI	CTAG	1 cut(s)	954
StyD4I	CCNGG	4 cut(s)	122, 471, 771, 825
StyI	CCWWGG	2 cut(s)	396, 1008
TaiI	ACGT	4 cut(s)	242, 350, 608, 1024
TaqI	TCGA	6 cut(s)	36, 66, 263, 522, 538, 865
TaqII	GACCGA	1 cut(s)	276
TasI	AATT	1 cut(s)	259
TauI	GCSGC	4 cut(s)	143, 146, 177, 180
TfiI	GAWTC	6 cut(s)	33, 185, 409, 535, 692, 1160
Tru1I	TTAA	4 cut(s)	948, 1077, 1221, 1235
Tru9I	TTAA	4 cut(s)	948, 1077, 1221, 1235
TscAI	CASTG	1 cut(s)	303
TseI	GCWGC	1 cut(s)	830
TspDTI	ATGAA	5 cut(s)	633, 774, 827, 1011, 1035
TspRI	CASTG	1 cut(s)	303
Tth111I	GACNNNGTC	1 cut(s)	349
Van91I	CCANNNNNTGG	1 cut(s)	478
Vha464I	CTTAAG	1 cut(s)	1076
XapI	RAATTY	1 cut(s)	259
XmiI	GTMKAC	1 cut(s)	837
XspI	CTAG	1 cut(s)	954
ZraI	GACGTC	2 cut(s)	240, 348

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.