Rh5BG059000

DUF1771

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5B
Physical Location & Seq
Forward (+)
4866114 .. 4871305
5192 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5BG059000.1

Sequence Viewer

Length: 1227 bp
ATGGAAGCTTCTGGTTTCAATGGCGCCTCCAGATTTGACGACGAACAGGGCTTGAGGGTATTGCTCGACGCTTTTGGCCCGGCGTTTTCCCTTGAAGAAATCGCCTCGGCTTATTGCAAGGCCGGGAAGAACGCCGAGGCCGCCGCCGAGACTCTGGCTCTCTCCGCCACCAGCGCCGGCGAAGAATCGTCGGCAGTGGTATCGGATGATGGTGGGATTGGCAAGAAGGACAAAACGACGTCGGATAATGGGAGTGGGAATTCGAGGGGTGCGAAGACGAAGTATCGGTCGGTTTCAGTGGGGAGTGTTTCTGGTGTTATTGGGAAGCATTATGGGAACCAAACGACGTCGTCGGGAGGTAATGGAGGGAAGGCGTTGAGAGTGGACTCAAAGTCCAAGGTGTTGCCGATTCCGGAGAGCTGGGTGGAAAAGGCGGAGTCTTGTTCTTCTTCAGCTGGGGATGATGTGCTTCACCAGGACATGGAGGATTTTCTGTTCAATATGCTTGGAGAGGGGTTCAAGCTCGATAGGGATGTGATTCGAGACGTTCTTGATAGTTGCGGATATGATATGGAAAAGAGCATGGAAAATCTGATCAGTTTGTCAACGTCAGCCTCGGATGAAAGAAACGAAGTCATCTCTAACTCCAATGATAAGTCTGCAGGCTCATATCTGAAATTGGAAGAATCTTCTCAGAGAAAGCACATAAACTCCACTGAAGGTAATGGAGACAGGGCTTCAAATACAAATGAAGTAGAATCTACTGGAAAAGAAAAGAAGAGATTTGATCTACAGAAGGAAGTTTTGGCTGCTCTCTTCAATGCTCCTGAGAGATCTGAGGAGCCGGAGCTACCAAAAACAAGAATAGTAAGATCAACGAAGGGATATGCAGACTACGGCCATTTGGTGCTTGAACCTCCAAAAGATTCCTTTTCAGATCACAAGACACCTGTGGTCTATCAACAGCATCATACTGAGGATGATGCAGATGATGAAGTTAGGTACCAGGTTCTTCGCAAAAGTGTGAAGGAGTATCGGAGTACGATGAAGGAGTATTACCAGGCAGCTGTAGACGCATTTTCTAAGGGAGATCGTATTCGAGCAGACAAACTTATGGAACAGGGACATTTTTTCCAGAAAAAGGCACGCGAAGCAGATGAGGAGTCAAATAAAATGATCCTTAAACCTAGGTCAGCATCCTTTTTTTGTGTTGTCCAACCCTCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

408

Amino Acids

44.64

Weight (kDa)

5.23

Isoelectric Point (pI)

36.12

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
UBA_At5g58720 PF24767 15 - 53 6.7e-06 At5g58720 UBA-like domain
DUF1771 PF08590 335 - 397 4.7e-14 Domain of unknown function (DUF1771)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 2 cut(s) 242, 350
Acc65I GGTACC 1 cut(s) 1002
AccB1I GGYRCC 2 cut(s) 23, 1002
AccB7I CCANNNNNTGG 1 cut(s) 481
AccI GTMKAC 1 cut(s) 1071
AccII CGCG 1 cut(s) 1149
AccIII TCCGGA 1 cut(s) 412
AciI CCGC 5 cut(s) 141, 144, 165, 434, 561
AclWI GGATC 1 cut(s) 1171
AcoI YGGCCR 1 cut(s) 898
AcsI RAATTY 1 cut(s) 259
AcuI CTGAAG 2 cut(s) 435, 738
AcyI GRCGYC 3 cut(s) 24, 239, 347
AfaI GTAC 2 cut(s) 1004, 1042
AfiI CCNNNNNNNGG 2 cut(s) 481, 1141
AgsI TTSAA 7 cut(s) 19, 95, 499, 520, 741, 820, 914
AhdI GACNNNNNGTC 1 cut(s) 391
AjnI CCWGG 3 cut(s) 474, 1005, 1059
AjuI GAANNNNNNNTTGG 2 cut(s) 788, 820
AloI GAACNNNNNNTCC 2 cut(s) 479, 511
AluBI AGCT 6 cut(s) 8, 420, 455, 523, 850, 1067
AluI AGCT 6 cut(s) 8, 420, 455, 523, 850, 1067
Alw26I GTCTC 3 cut(s) 143, 537, 723
AlwI GGATC 1 cut(s) 1171
Aor13HI TCCGGA 1 cut(s) 412
AoxI GGCC 4 cut(s) 76, 120, 138, 898
ApeKI GCWGC 2 cut(s) 809, 1064
ApoI RAATTY 1 cut(s) 259
ArsI GACNNNNNNTTYG 2 cut(s) 272, 304
Asp718I GGTACC 1 cut(s) 1002
AspA2I CCTAGG 1 cut(s) 1187
AspLEI GCGC 2 cut(s) 26, 176
AspS9I GGNCC 1 cut(s) 77
AsuC2I CCSGG 2 cut(s) 80, 124
AsuHPI GGTGA 1 cut(s) 464
AvrII CCTAGG 1 cut(s) 1187
BanI GGYRCC 2 cut(s) 23, 1002
BarI GAAGNNNNNNTAC 2 cut(s) 1040, 1072
BbsI GAAGAC 1 cut(s) 281
BbvI GCAGC 2 cut(s) 796, 1076
BccI CCATC 1 cut(s) 203
BceAI ACGGC 1 cut(s) 913
BcgI CGANNNNNNTGC 2 cut(s) 183, 217
BciT130I CCWGG 3 cut(s) 476, 1007, 1061
BclI TGATCA 1 cut(s) 594
BcnI CCSGG 2 cut(s) 80, 124
BcoDI GTCTC 3 cut(s) 143, 537, 723
BfaI CTAG 1 cut(s) 1188
BfmI CTRYAG 3 cut(s) 660, 791, 1068
BfoI RGCGCY 2 cut(s) 27, 177
BglII AGATCT 1 cut(s) 833
BisI GCNGC 4 cut(s) 141, 144, 810, 1065
BlnI CCTAGG 1 cut(s) 1187
BlsI GCNGC 4 cut(s) 142, 145, 811, 1066
Bme1390I CCNGG 5 cut(s) 80, 124, 476, 1007, 1061
BmeRI GACNNNNNGTC 1 cut(s) 391
BmgT120I GGNCC 1 cut(s) 77
BmiI GGNNCC 4 cut(s) 25, 338, 843, 1004
BmrFI CCNGG 5 cut(s) 80, 124, 476, 1007, 1061
BmsI GCATC 3 cut(s) 973, 976, 1205
BpiI GAAGAC 1 cut(s) 281
BpmI CTGGAG 1 cut(s) 13
BpuEI CTTGAG 1 cut(s) 73
BpuMI CCSGG 2 cut(s) 80, 124
BsaHI GRCGYC 3 cut(s) 24, 239, 347
BsaJI CCNNGG 5 cut(s) 105, 135, 396, 615, 1187
BsaWI WCCGGW 1 cut(s) 412
BsaXI ACNNNNNCTCC 2 cut(s) 695, 725
Bsc4I CCNNNNNNNGG 2 cut(s) 481, 1141
Bse118I RCCGGY 1 cut(s) 176
Bse1I ACTGG 1 cut(s) 769
BseAI TCCGGA 1 cut(s) 412
BseBI CCWGG 3 cut(s) 476, 1007, 1061
BseDI CCNNGG 5 cut(s) 105, 135, 396, 615, 1187
BseGI GGATG 6 cut(s) 211, 466, 538, 625, 985, 1196
BseLI CCNNNNNNNGG 2 cut(s) 481, 1141
BseMII CTCAG 4 cut(s) 707, 819, 828, 966
BseNI ACTGG 1 cut(s) 769
BseRI GAGGAG 2 cut(s) 854, 1175
BseXI GCAGC 2 cut(s) 796, 1076
BseYI CCCAGC 2 cut(s) 420, 455
Bsh1236I CGCG 1 cut(s) 1149
Bsh1285I CGRYCG 1 cut(s) 290
BshFI GGCC 4 cut(s) 78, 122, 140, 900
BshNI GGYRCC 2 cut(s) 23, 1002
BsiEI CGRYCG 1 cut(s) 290
BsiSI CCGG 5 cut(s) 80, 123, 177, 413, 845
BslFI GGGAC 1 cut(s) 1137
BslI CCNNNNNNNGG 2 cut(s) 481, 1141
BsmAI GTCTC 3 cut(s) 143, 537, 723
BsmBI CGTCTC 1 cut(s) 537
BsmFI GGGAC 1 cut(s) 1137
BsnI GGCC 4 cut(s) 78, 122, 140, 900
Bsp13I TCCGGA 1 cut(s) 412
Bsp143I GATC 7 cut(s) 594, 787, 833, 872, 937, 1090, 1176
BspACI CCGC 5 cut(s) 141, 144, 165, 434, 561
BspANI GGCC 4 cut(s) 78, 122, 140, 900
BspCNI CTCAG 4 cut(s) 706, 820, 829, 967
BspEI TCCGGA 1 cut(s) 412
BspFNI CGCG 1 cut(s) 1149
BspLI GGNNCC 4 cut(s) 25, 338, 843, 1004
BspMAI CTGCAG 1 cut(s) 664
BspPI GGATC 1 cut(s) 1171
BspT107I GGYRCC 2 cut(s) 23, 1002
BsrFI RCCGGY 1 cut(s) 176
BsrI ACTGG 1 cut(s) 769
BssAI RCCGGY 1 cut(s) 176
BssECI CCNNGG 5 cut(s) 105, 135, 396, 615, 1187
BssMI GATC 7 cut(s) 594, 787, 833, 872, 937, 1090, 1176
BssNI GRCGYC 3 cut(s) 24, 239, 347
BssT1I CCWWGG 2 cut(s) 396, 1187
Bst2UI CCWGG 3 cut(s) 476, 1007, 1061
Bst6I CTCTTC 2 cut(s) 773, 821
BstACI GRCGYC 3 cut(s) 24, 239, 347
BstC8I GCNNGC 3 cut(s) 178, 664, 1147
BstDEI CTNAG 6 cut(s) 693, 828, 837, 975, 1083, 1224
BstF5I GGATG 6 cut(s) 211, 466, 538, 625, 985, 1196
BstFNI CGCG 1 cut(s) 1149
BstH2I RGCGCY 2 cut(s) 27, 177
BstHHI GCGC 2 cut(s) 26, 176
BstKTI GATC 7 cut(s) 597, 790, 836, 875, 940, 1093, 1179
BstMAI GTCTC 3 cut(s) 143, 537, 723
BstMBI GATC 7 cut(s) 594, 787, 833, 872, 937, 1090, 1176
BstMCI CGRYCG 1 cut(s) 290
BstMWI GCNNNNNNNGC 5 cut(s) 140, 164, 173, 1073, 1151
BstNI CCWGG 3 cut(s) 476, 1007, 1061
BstSCI CCNGG 5 cut(s) 78, 122, 474, 1005, 1059
BstSFI CTRYAG 3 cut(s) 660, 791, 1068
BstUI CGCG 1 cut(s) 1149
BstV1I GCAGC 2 cut(s) 796, 1076
BstV2I GAAGAC 1 cut(s) 281
BstX2I RGATCY 1 cut(s) 833
BstYI RGATCY 1 cut(s) 833
BsuRI GGCC 4 cut(s) 78, 122, 140, 900
BtsCI GGATG 6 cut(s) 211, 466, 538, 625, 985, 1196
BtsI GCAGTG 1 cut(s) 201
BtsIMutI CAGTG 3 cut(s) 201, 303, 714
Cac8I GCNNGC 3 cut(s) 178, 664, 1147
CfoI GCGC 2 cut(s) 26, 176
Cfr10I RCCGGY 1 cut(s) 176
Cfr13I GGNCC 1 cut(s) 77
CseI GACGC 2 cut(s) 77, 1082
CsiI ACCWGGT 1 cut(s) 1005
Csp6I GTAC 2 cut(s) 1003, 1041
CviAII CATG 2 cut(s) 481, 583
CviQI GTAC 2 cut(s) 1003, 1041
DdeI CTNAG 6 cut(s) 693, 828, 837, 975, 1083, 1224
DinI GGCGCC 1 cut(s) 25
DpnI GATC 7 cut(s) 596, 789, 835, 874, 939, 1092, 1178
DpnII GATC 7 cut(s) 594, 787, 833, 872, 937, 1090, 1176
DriI GACNNNNNGTC 1 cut(s) 391
EaeI YGGCCR 1 cut(s) 898
Eam1104I CTCTTC 2 cut(s) 773, 821
Eam1105I GACNNNNNGTC 1 cut(s) 391
EarI CTCTTC 2 cut(s) 773, 821
EciI GGCGGA 2 cut(s) 154, 449
Eco130I CCWWGG 2 cut(s) 396, 1187
Eco57I CTGAAG 2 cut(s) 435, 738
EcoRI GAATTC 1 cut(s) 259
EcoRII CCWGG 3 cut(s) 474, 1005, 1059
EcoT14I CCWWGG 2 cut(s) 396, 1187
EgeI GGCGCC 1 cut(s) 25
EheI GGCGCC 1 cut(s) 25
ErhI CCWWGG 2 cut(s) 396, 1187
Esp3I CGTCTC 1 cut(s) 537
FaeI CATG 2 cut(s) 484, 586
FaqI GGGAC 1 cut(s) 1137
FatI CATG 2 cut(s) 480, 582
FbaI TGATCA 1 cut(s) 594
FblI GTMKAC 1 cut(s) 1071
Fnu4HI GCNGC 4 cut(s) 141, 144, 810, 1065
FokI GGATG 6 cut(s) 218, 473, 545, 632, 992, 1183
Fsp4HI GCNGC 4 cut(s) 141, 144, 810, 1065
FspBI CTAG 1 cut(s) 1188
GlaI GCGC 2 cut(s) 25, 175
GluI GCNGC 4 cut(s) 141, 144, 810, 1065
GsaI CCCAGC 2 cut(s) 424, 459
GsuI CTGGAG 1 cut(s) 13
HaeII RGCGCY 2 cut(s) 27, 177
HaeIII GGCC 4 cut(s) 78, 122, 140, 900
HapII CCGG 5 cut(s) 80, 123, 177, 413, 845
HgaI GACGC 2 cut(s) 77, 1082
HhaI GCGC 2 cut(s) 26, 176
Hin1I GRCGYC 3 cut(s) 24, 239, 347
Hin1II CATG 2 cut(s) 484, 586
Hin6I GCGC 2 cut(s) 24, 174
HinP1I GCGC 2 cut(s) 24, 174
HincII GTYRAC 1 cut(s) 606
HindII GTYRAC 1 cut(s) 606
HindIII AAGCTT 1 cut(s) 6
HpaII CCGG 5 cut(s) 80, 123, 177, 413, 845
HphI GGTGA 1 cut(s) 464
Hpy166II GTNNAC 3 cut(s) 385, 606, 1072
Hpy188I TCNGA 9 cut(s) 205, 244, 594, 619, 675, 696, 838, 937, 1038
Hpy188III TCNNGA 7 cut(s) 30, 354, 413, 542, 551, 827, 1135
Hpy8I GTNNAC 3 cut(s) 385, 606, 1072
Hpy99I CGWCG 8 cut(s) 44, 71, 193, 241, 244, 349, 352, 355
HpyAV CCTTC 7 cut(s) 220, 364, 713, 790, 874, 1021, 1042
HpyCH4IV ACGT 4 cut(s) 239, 347, 546, 608
HpyCH4V TGCA 4 cut(s) 117, 662, 890, 986
HpyF10VI GCNNNNNNNGC 5 cut(s) 140, 164, 173, 1073, 1151
HpyF3I CTNAG 6 cut(s) 693, 828, 837, 975, 1083, 1224
HpySE526I ACGT 4 cut(s) 239, 347, 546, 608
Hsp92I GRCGYC 3 cut(s) 24, 239, 347
Hsp92II CATG 2 cut(s) 484, 586
HspAI GCGC 2 cut(s) 24, 174
KasI GGCGCC 1 cut(s) 23
Kpn2I TCCGGA 1 cut(s) 412
KpnI GGTACC 1 cut(s) 1006
KroI GCCGGC 1 cut(s) 176
KroNI GCCGGC 1 cut(s) 178
Ksp22I TGATCA 1 cut(s) 594
Kzo9I GATC 7 cut(s) 594, 787, 833, 872, 937, 1090, 1176
LmnI GCTCC 3 cut(s) 829, 841, 847
Lsp1109I GCAGC 2 cut(s) 796, 1076
LweI GCATC 3 cut(s) 973, 976, 1205
MabI ACCWGGT 1 cut(s) 1005
MaeI CTAG 1 cut(s) 1188
MaeII ACGT 4 cut(s) 239, 347, 546, 608
MalI GATC 7 cut(s) 596, 789, 835, 874, 939, 1092, 1178
MboI GATC 7 cut(s) 594, 787, 833, 872, 937, 1090, 1176
MflI RGATCY 1 cut(s) 833
MluCI AATT 2 cut(s) 259, 677
Mly113I GGCGCC 1 cut(s) 24
MlyI GAGTC 4 cut(s) 145, 380, 446, 1172
MmeI TCCRAC 1 cut(s) 222
MreI CGCCGGCG 1 cut(s) 176
MroI TCCGGA 1 cut(s) 412
MroNI GCCGGC 1 cut(s) 176
MseI TTAA 1 cut(s) 1182
MspA1I CMGCKG 2 cut(s) 455, 1067
MspI CCGG 5 cut(s) 80, 123, 177, 413, 845
MspR9I CCNGG 5 cut(s) 80, 124, 476, 1007, 1061
MvaI CCWGG 3 cut(s) 476, 1007, 1061
MvnI CGCG 1 cut(s) 1149
MwoI GCNNNNNNNGC 5 cut(s) 140, 164, 173, 1073, 1151
NaeI GCCGGC 1 cut(s) 178
NarI GGCGCC 1 cut(s) 24
NciI CCSGG 2 cut(s) 80, 124
NdeII GATC 7 cut(s) 594, 787, 833, 872, 937, 1090, 1176
NgoMIV GCCGGC 1 cut(s) 176
NlaIII CATG 2 cut(s) 484, 586
NlaIV GGNNCC 4 cut(s) 25, 338, 843, 1004
NmeAIII GCCGAG 3 cut(s) 86, 160, 172
PcsI WCGNNNNNNNCGW 1 cut(s) 269
PdiI GCCGGC 1 cut(s) 178
PfeI GAWTC 6 cut(s) 185, 409, 538, 686, 758, 926
PflFI GACNNNGTC 1 cut(s) 349
PflMI CCANNNNNTGG 1 cut(s) 481
PkrI GCNGC 4 cut(s) 142, 145, 811, 1066
PleI GAGTC 4 cut(s) 145, 380, 445, 1171
PluTI GGCGCC 1 cut(s) 27
PpsI GAGTC 4 cut(s) 145, 380, 445, 1171
Psp6I CCWGG 3 cut(s) 474, 1005, 1059
PspFI CCCAGC 2 cut(s) 420, 455
PspGI CCWGG 3 cut(s) 474, 1005, 1059
PspN4I GGNNCC 4 cut(s) 25, 338, 843, 1004
PspPI GGNCC 1 cut(s) 77
PstI CTGCAG 1 cut(s) 664
PsuI RGATCY 1 cut(s) 833
PsyI GACNNNGTC 1 cut(s) 349
PvuII CAGCTG 2 cut(s) 455, 1067
RsaI GTAC 2 cut(s) 1004, 1042
RsaNI GTAC 2 cut(s) 1003, 1041
SaqAI TTAA 1 cut(s) 1182
SatI GCNGC 4 cut(s) 141, 144, 810, 1065
Sau3AI GATC 7 cut(s) 594, 787, 833, 872, 937, 1090, 1176
Sau96I GGNCC 1 cut(s) 77
SchI GAGTC 4 cut(s) 145, 380, 446, 1172
ScrFI CCNGG 5 cut(s) 80, 124, 476, 1007, 1061
SexAI ACCWGGT 1 cut(s) 1005
SfaNI GCATC 3 cut(s) 973, 976, 1205
SfcI CTRYAG 3 cut(s) 660, 791, 1068
SfoI GGCGCC 1 cut(s) 25
SgrAI CRCCGGYG 1 cut(s) 176
SmlI CTYRAG 1 cut(s) 52
SmoI CTYRAG 1 cut(s) 52
Sse9I AATT 2 cut(s) 259, 677
SsiI CCGC 5 cut(s) 141, 144, 165, 434, 561
SspDI GGCGCC 1 cut(s) 23
SspMI CTAG 1 cut(s) 1188
StyD4I CCNGG 5 cut(s) 78, 122, 474, 1005, 1059
StyI CCWWGG 2 cut(s) 396, 1187
TaiI ACGT 4 cut(s) 242, 350, 549, 611
TaqI TCGA 5 cut(s) 66, 263, 525, 541, 1099
TaqII GACCGA 1 cut(s) 276
TasI AATT 2 cut(s) 259, 677
TauI GCSGC 2 cut(s) 143, 146
TfiI GAWTC 6 cut(s) 185, 409, 538, 686, 758, 926
Tru1I TTAA 1 cut(s) 1182
Tru9I TTAA 1 cut(s) 1182
TscAI CASTG 3 cut(s) 201, 303, 721
TseI GCWGC 2 cut(s) 809, 1064
TspDTI ATGAA 4 cut(s) 636, 765, 1008, 1061
TspRI CASTG 3 cut(s) 201, 303, 721
Tth111I GACNNNGTC 1 cut(s) 349
Van91I CCANNNNNTGG 1 cut(s) 481
XapI RAATTY 1 cut(s) 259
XmaJI CCTAGG 1 cut(s) 1187
XmiI GTMKAC 1 cut(s) 1071
XspI CTAG 1 cut(s) 1188
ZraI GACGTC 2 cut(s) 240, 348
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.