Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5A

Orthogroup ID

OG0007493

Physical Location & Seq

Genomic Coordinates Forward (+)

5284616 .. 5288371

Gene Structure 3756 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5AG062700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1167 bp

ATGGAAGCTTCTGGTTTCAATGGCGCCCCCAGATTCGACGACGAACAGGGCTTGAGGGTTTTGCTCGACGCCTTTGGCCCTGCGTTTTCCATTGAGGAAATCGCTTCGGCTTATTGCAAGGCCGGGAAGAACGCCGAGGCCGCCGCCGAGACTCTGTCTCTCTCCGCCACCAGCGCCGGCGAAGAATCGTCGGGAGTGGTATCGGATGATGGTGGGATTGGGAAGAAGGACAAAACGACGTCGGATAATGGGAGTGGGAATTCGAGGGGTGCGAAGACGAAGTATCGGTCGGTTTCAGTGGGGAGTGTTTCTGGTGTTATTGGGAAGCATTATGGGAACAAAACGGCGTCGTCGGGTGGTAATGGAGGGAAGGCGTTGAGAGTGGACACGAAGTCCAAGGTGTTGCCGATTCCGGAGAGCTGGGTGGAAAAGGCCGAGCCTTGTTCTTCTTCGGCTGGGGATGATGTGCTTCACCAGGACATGGAGGATTTTCTGTTCAATATGCTTGGAGAGGGGTTCAAGCTCGATAGGGATGTGATTCGAGACGTTCTTGATAGTTGCGGATATGATATGGAAAAGAGCATGGAAAATCTGATCAGTTTGTCAACGTCAGCCTCGGATGAAAGAAACGAAGTCATCTCTAACTCCAATGATAAGAAGGAACTTTTGGCTGCTCTCTTCAATGCTCCTGAGAGACCCGAGGAGCCGGAGCTACCAAAAACAAGAATAGTAAGATCAACAAAGGGATATGCAGACTACGGCCATTTGGTGCTTGAACCTCCAAAAGATTCCTTTTCAGATCACAAGACACCTGTGGTCTATCAACAGCATCATACTGAGGATGATGCAGATGATGAAGTTAGGTACCAGGTTCTTCGCAAAAGTGTGAAGGAGTATCGGAGTACGATGAAGGAGTATTACCAGGCAGCTGTAGACGCATTTTCTAAGGGAGATCGTATTCGAGCAGACAAACTTATGGAACAGGGACAGTTTTTCCAGAAAAAGGCACGCGAAGCCGATGAGGAGTCAAATAAAATGATCCTTAAACCTAGAGATGCTGAGGCACAAGGGGATATAGTGCTTGACTTGCATGAAGGTGGTGCCAAGGAGGCAATACGTCTTCTGAAGTGTCATCTCTCCTCACTTTCTGGTATCTCATGTAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF1771

Protein Analysis

388

Amino Acids

42.26

Weight (kDa)

5.15

Isoelectric Point (pI)

32.19

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
UBA_At5g58720	PF24767	15 - 53	4.6e-06	At5g58720 UBA-like domain
DUF1771	PF08590	289 - 350	5.3e-14	Domain of unknown function (DUF1771)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007493)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g09380 FvH4_6g17870 FvH4_6g17870 FvH4_6g17870 FvH4_6g17870 FvH4_6g17870 FvH4_6g17870 FvH4_6g17870 FvH4_6g17870
malus_domestica	MD00G1095600.v1.1 MD05G1314000.v1.1
prunus_persica	Prupe.4G045500_v2.0.a1 Prupe.4G045500_v2.0.a1
pyrus_communis	pycom05g29180 pycom10g24770
rosa_chinensis	RchiOBHm_Chr5g0008211
rosa_laevigata	RLG00000031549
rosa_roxburghii	Rroxscaffold_1G00068270
rosa_rugosa	Rorug04G0434300 Rorug04G0434400
rosa_samantha	Rh5AG062700 Rh5BG059000 Rh5CG069600 Rh5DG058600
rosa_wichuraiana	Rw5G005830

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	242
Acc65I	GGTACC	1 cut(s)	864
AccB1I	GGYRCC	3 cut(s)	23, 864, 1100
AccB7I	CCANNNNNTGG	1 cut(s)	481
AccI	GTMKAC	1 cut(s)	933
AccII	CGCG	1 cut(s)	1011
AccIII	TCCGGA	1 cut(s)	412
AciI	CCGC	4 cut(s)	141, 144, 165, 561
AclWI	GGATC	1 cut(s)	1033
AcoI	YGGCCR	1 cut(s)	760
AcsI	RAATTY	1 cut(s)	259
AcuI	CTGAAG	1 cut(s)	1145
AcyI	GRCGYC	4 cut(s)	24, 69, 239, 347
AfaI	GTAC	2 cut(s)	866, 904
AfiI	CCNNNNNNNGG	2 cut(s)	481, 1003
AgsI	TTSAA	5 cut(s)	19, 499, 520, 682, 776
AhdI	GACNNNNNGTC	1 cut(s)	391
AjnI	CCWGG	3 cut(s)	474, 867, 921
AjuI	GAANNNNNNNTTGG	2 cut(s)	650, 682
AloI	GAACNNNNNNTCC	2 cut(s)	479, 511
AluBI	AGCT	5 cut(s)	8, 420, 523, 712, 929
AluI	AGCT	5 cut(s)	8, 420, 523, 712, 929
Alw26I	GTCTC	4 cut(s)	143, 162, 537, 688
AlwI	GGATC	1 cut(s)	1033
Ama87I	CYCGRG	1 cut(s)	698
Aor13HI	TCCGGA	1 cut(s)	412
AoxI	GGCC	5 cut(s)	76, 120, 138, 432, 760
ApeKI	GCWGC	2 cut(s)	671, 926
ApoI	RAATTY	1 cut(s)	259
ArsI	GACNNNNNNTTYG	2 cut(s)	272, 304
Asp718I	GGTACC	1 cut(s)	864
AspLEI	GCGC	2 cut(s)	26, 176
AspS9I	GGNCC	1 cut(s)	77
AsuC2I	CCSGG	1 cut(s)	124
AsuHPI	GGTGA	1 cut(s)	464
AvaI	CYCGRG	1 cut(s)	698
BanI	GGYRCC	3 cut(s)	23, 864, 1100
BarI	GAAGNNNNNNTAC	2 cut(s)	902, 934
BbsI	GAAGAC	2 cut(s)	281, 1112
BbvCI	CCTCAGC	1 cut(s)	1059
BbvI	GCAGC	2 cut(s)	658, 938
BccI	CCATC	1 cut(s)	203
BceAI	ACGGC	2 cut(s)	360, 775
BciT130I	CCWGG	3 cut(s)	476, 869, 923
BclI	TGATCA	1 cut(s)	594
BcnI	CCSGG	1 cut(s)	124
BcoDI	GTCTC	4 cut(s)	143, 162, 537, 688
BfaI	CTAG	1 cut(s)	1050
BfmI	CTRYAG	1 cut(s)	930
BfoI	RGCGCY	2 cut(s)	27, 177
BglI	GCCNNNNNGGC	1 cut(s)	1109
BisI	GCNGC	4 cut(s)	141, 144, 672, 927
BlsI	GCNGC	4 cut(s)	142, 145, 673, 928
Bme1390I	CCNGG	4 cut(s)	124, 476, 869, 923
BmeRI	GACNNNNNGTC	1 cut(s)	391
BmeT110I	CYCGRG	1 cut(s)	698
BmgT120I	GGNCC	1 cut(s)	77
BmiI	GGNNCC	4 cut(s)	25, 705, 866, 1102
BmrFI	CCNGG	4 cut(s)	124, 476, 869, 923
BmsI	GCATC	3 cut(s)	835, 838, 1045
BpiI	GAAGAC	2 cut(s)	281, 1112
Bpu10I	CCTNAGC	1 cut(s)	1059
BpuEI	CTTGAG	1 cut(s)	73
BpuMI	CCSGG	1 cut(s)	124
BsaHI	GRCGYC	4 cut(s)	24, 69, 239, 347
BsaI	GGTCTC	1 cut(s)	688
BsaJI	CCNNGG	5 cut(s)	135, 396, 615, 699, 1104
BsaWI	WCCGGW	1 cut(s)	412
Bsc4I	CCNNNNNNNGG	2 cut(s)	481, 1003
Bse118I	RCCGGY	1 cut(s)	176
BseAI	TCCGGA	1 cut(s)	412
BseBI	CCWGG	3 cut(s)	476, 869, 923
BseDI	CCNNGG	5 cut(s)	135, 396, 615, 699, 1104
BseGI	GGATG	5 cut(s)	211, 466, 538, 625, 847
BseLI	CCNNNNNNNGG	2 cut(s)	481, 1003
BseMII	CTCAG	3 cut(s)	681, 828, 1050
BseRI	GAGGAG	3 cut(s)	716, 1037, 1129
BseXI	GCAGC	2 cut(s)	658, 938
BseYI	CCCAGC	2 cut(s)	420, 455
Bsh1236I	CGCG	1 cut(s)	1011
Bsh1285I	CGRYCG	1 cut(s)	290
BshFI	GGCC	5 cut(s)	78, 122, 140, 434, 762
BshNI	GGYRCC	3 cut(s)	23, 864, 1100
BsiEI	CGRYCG	1 cut(s)	290
BsiHKCI	CYCGRG	1 cut(s)	698
BsiSI	CCGG	4 cut(s)	123, 177, 413, 707
BslFI	GGGAC	1 cut(s)	999
BslI	CCNNNNNNNGG	2 cut(s)	481, 1003
BsmAI	GTCTC	4 cut(s)	143, 162, 537, 688
BsmBI	CGTCTC	1 cut(s)	537
BsmFI	GGGAC	1 cut(s)	999
BsnI	GGCC	5 cut(s)	78, 122, 140, 434, 762
Bso31I	GGTCTC	1 cut(s)	688
BsoBI	CYCGRG	1 cut(s)	698
Bsp13I	TCCGGA	1 cut(s)	412
Bsp143I	GATC	5 cut(s)	594, 734, 799, 952, 1038
BspACI	CCGC	4 cut(s)	141, 144, 165, 561
BspANI	GGCC	5 cut(s)	78, 122, 140, 434, 762
BspCNI	CTCAG	3 cut(s)	682, 829, 1051
BspEI	TCCGGA	1 cut(s)	412
BspFNI	CGCG	1 cut(s)	1011
BspLI	GGNNCC	4 cut(s)	25, 705, 866, 1102
BspPI	GGATC	1 cut(s)	1033
BspT107I	GGYRCC	3 cut(s)	23, 864, 1100
BspTNI	GGTCTC	1 cut(s)	688
BsrFI	RCCGGY	1 cut(s)	176
BssAI	RCCGGY	1 cut(s)	176
BssECI	CCNNGG	5 cut(s)	135, 396, 615, 699, 1104
BssMI	GATC	5 cut(s)	594, 734, 799, 952, 1038
BssNI	GRCGYC	4 cut(s)	24, 69, 239, 347
BssT1I	CCWWGG	2 cut(s)	396, 1104
Bst2UI	CCWGG	3 cut(s)	476, 869, 923
Bst4CI	ACNGT	1 cut(s)	990
Bst6I	CTCTTC	1 cut(s)	683
BstACI	GRCGYC	4 cut(s)	24, 69, 239, 347
BstC8I	GCNNGC	2 cut(s)	178, 1009
BstDEI	CTNAG	4 cut(s)	690, 837, 945, 1059
BstF5I	GGATG	5 cut(s)	211, 466, 538, 625, 847
BstFNI	CGCG	1 cut(s)	1011
BstH2I	RGCGCY	2 cut(s)	27, 177
BstHHI	GCGC	2 cut(s)	26, 176
BstKTI	GATC	5 cut(s)	597, 737, 802, 955, 1041
BstMAI	GTCTC	4 cut(s)	143, 162, 537, 688
BstMBI	GATC	5 cut(s)	594, 734, 799, 952, 1038
BstMCI	CGRYCG	1 cut(s)	290
BstMWI	GCNNNNNNNGC	6 cut(s)	140, 173, 935, 1013, 1087, 1109
BstNI	CCWGG	3 cut(s)	476, 869, 923
BstSCI	CCNGG	4 cut(s)	122, 474, 867, 921
BstSFI	CTRYAG	1 cut(s)	930
BstUI	CGCG	1 cut(s)	1011
BstV1I	GCAGC	2 cut(s)	658, 938
BstV2I	GAAGAC	2 cut(s)	281, 1112
BsuRI	GGCC	5 cut(s)	78, 122, 140, 434, 762
BtsCI	GGATG	5 cut(s)	211, 466, 538, 625, 847
BtsIMutI	CAGTG	1 cut(s)	303
Cac8I	GCNNGC	2 cut(s)	178, 1009
CfoI	GCGC	2 cut(s)	26, 176
Cfr10I	RCCGGY	1 cut(s)	176
Cfr13I	GGNCC	1 cut(s)	77
CseI	GACGC	3 cut(s)	77, 336, 944
CsiI	ACCWGGT	1 cut(s)	867
Csp6I	GTAC	2 cut(s)	865, 903
CviAII	CATG	4 cut(s)	481, 583, 1091, 1158
CviQI	GTAC	2 cut(s)	865, 903
DdeI	CTNAG	4 cut(s)	690, 837, 945, 1059
DinI	GGCGCC	1 cut(s)	25
DpnI	GATC	5 cut(s)	596, 736, 801, 954, 1040
DpnII	GATC	5 cut(s)	594, 734, 799, 952, 1038
DriI	GACNNNNNGTC	1 cut(s)	391
EaeI	YGGCCR	1 cut(s)	760
Eam1104I	CTCTTC	1 cut(s)	683
Eam1105I	GACNNNNNGTC	1 cut(s)	391
EarI	CTCTTC	1 cut(s)	683
EciI	GGCGGA	1 cut(s)	154
Eco130I	CCWWGG	2 cut(s)	396, 1104
Eco31I	GGTCTC	1 cut(s)	688
Eco57I	CTGAAG	1 cut(s)	1145
Eco88I	CYCGRG	1 cut(s)	698
EcoRI	GAATTC	1 cut(s)	259
EcoRII	CCWGG	3 cut(s)	474, 867, 921
EcoT14I	CCWWGG	2 cut(s)	396, 1104
EgeI	GGCGCC	1 cut(s)	25
EheI	GGCGCC	1 cut(s)	25
ErhI	CCWWGG	2 cut(s)	396, 1104
Esp3I	CGTCTC	1 cut(s)	537
FaeI	CATG	4 cut(s)	484, 586, 1094, 1161
FaqI	GGGAC	1 cut(s)	999
FatI	CATG	4 cut(s)	480, 582, 1090, 1157
FbaI	TGATCA	1 cut(s)	594
FblI	GTMKAC	1 cut(s)	933
Fnu4HI	GCNGC	4 cut(s)	141, 144, 672, 927
FokI	GGATG	5 cut(s)	218, 473, 545, 632, 854
Fsp4HI	GCNGC	4 cut(s)	141, 144, 672, 927
FspBI	CTAG	1 cut(s)	1050
GlaI	GCGC	2 cut(s)	25, 175
GluI	GCNGC	4 cut(s)	141, 144, 672, 927
GsaI	CCCAGC	2 cut(s)	424, 459
HaeII	RGCGCY	2 cut(s)	27, 177
HaeIII	GGCC	5 cut(s)	78, 122, 140, 434, 762
HapII	CCGG	4 cut(s)	123, 177, 413, 707
HgaI	GACGC	3 cut(s)	77, 336, 944
HhaI	GCGC	2 cut(s)	26, 176
Hin1I	GRCGYC	4 cut(s)	24, 69, 239, 347
Hin1II	CATG	4 cut(s)	484, 586, 1094, 1161
Hin6I	GCGC	2 cut(s)	24, 174
HinP1I	GCGC	2 cut(s)	24, 174
HincII	GTYRAC	1 cut(s)	606
HindII	GTYRAC	1 cut(s)	606
HindIII	AAGCTT	1 cut(s)	6
HinfI	GANTC	7 cut(s)	33, 151, 185, 409, 538, 788, 1025
HpaII	CCGG	4 cut(s)	123, 177, 413, 707
HphI	GGTGA	1 cut(s)	464
Hpy166II	GTNNAC	3 cut(s)	385, 606, 934
Hpy188I	TCNGA	7 cut(s)	205, 244, 594, 619, 799, 900, 1125
Hpy188III	TCNNGA	6 cut(s)	192, 413, 542, 551, 689, 997
Hpy8I	GTNNAC	3 cut(s)	385, 606, 934
Hpy99I	CGWCG	8 cut(s)	41, 44, 71, 193, 241, 244, 352, 355
HpyAV	CCTTC	6 cut(s)	220, 364, 652, 883, 904, 1088
HpyCH4III	ACNGT	1 cut(s)	990
HpyCH4IV	ACGT	4 cut(s)	239, 546, 608, 1117
HpyCH4V	TGCA	4 cut(s)	117, 752, 848, 1090
HpyF10VI	GCNNNNNNNGC	6 cut(s)	140, 173, 935, 1013, 1087, 1109
HpyF3I	CTNAG	4 cut(s)	690, 837, 945, 1059
HpySE526I	ACGT	4 cut(s)	239, 546, 608, 1117
Hsp92I	GRCGYC	4 cut(s)	24, 69, 239, 347
Hsp92II	CATG	4 cut(s)	484, 586, 1094, 1161
HspAI	GCGC	2 cut(s)	24, 174
KasI	GGCGCC	1 cut(s)	23
Kpn2I	TCCGGA	1 cut(s)	412
KpnI	GGTACC	1 cut(s)	868
KroI	GCCGGC	1 cut(s)	176
KroNI	GCCGGC	1 cut(s)	178
Ksp22I	TGATCA	1 cut(s)	594
Kzo9I	GATC	5 cut(s)	594, 734, 799, 952, 1038
LmnI	GCTCC	3 cut(s)	691, 703, 709
Lsp1109I	GCAGC	2 cut(s)	658, 938
LweI	GCATC	3 cut(s)	835, 838, 1045
MabI	ACCWGGT	1 cut(s)	867
MaeI	CTAG	1 cut(s)	1050
MaeII	ACGT	4 cut(s)	239, 546, 608, 1117
MalI	GATC	5 cut(s)	596, 736, 801, 954, 1040
MboI	GATC	5 cut(s)	594, 734, 799, 952, 1038
MboII	GAAGA	9 cut(s)	139, 194, 235, 286, 438, 441, 670, 866, 1112
MluCI	AATT	1 cut(s)	259
Mly113I	GGCGCC	1 cut(s)	24
MlyI	GAGTC	2 cut(s)	145, 1034
MmeI	TCCRAC	1 cut(s)	222
MreI	CGCCGGCG	1 cut(s)	176
MroI	TCCGGA	1 cut(s)	412
MroNI	GCCGGC	1 cut(s)	176
MseI	TTAA	1 cut(s)	1044
MslI	CAYNNNNRTG	2 cut(s)	1095, 1162
MspA1I	CMGCKG	1 cut(s)	929
MspI	CCGG	4 cut(s)	123, 177, 413, 707
MspR9I	CCNGG	4 cut(s)	124, 476, 869, 923
MvaI	CCWGG	3 cut(s)	476, 869, 923
MvnI	CGCG	1 cut(s)	1011
MwoI	GCNNNNNNNGC	6 cut(s)	140, 173, 935, 1013, 1087, 1109
NaeI	GCCGGC	1 cut(s)	178
NarI	GGCGCC	1 cut(s)	24
NciI	CCSGG	1 cut(s)	124
NdeII	GATC	5 cut(s)	594, 734, 799, 952, 1038
NgoMIV	GCCGGC	1 cut(s)	176
NlaIII	CATG	4 cut(s)	484, 586, 1094, 1161
NlaIV	GGNNCC	4 cut(s)	25, 705, 866, 1102
NmeAIII	GCCGAG	3 cut(s)	160, 172, 460
PcsI	WCGNNNNNNNCGW	1 cut(s)	269
PdiI	GCCGGC	1 cut(s)	178
PfeI	GAWTC	5 cut(s)	33, 185, 409, 538, 788
PflFI	GACNNNGTC	1 cut(s)	154
PflMI	CCANNNNNTGG	1 cut(s)	481
PkrI	GCNGC	4 cut(s)	142, 145, 673, 928
PleI	GAGTC	2 cut(s)	145, 1033
PluTI	GGCGCC	1 cut(s)	27
PpsI	GAGTC	2 cut(s)	145, 1033
Psp6I	CCWGG	3 cut(s)	474, 867, 921
PspFI	CCCAGC	2 cut(s)	420, 455
PspGI	CCWGG	3 cut(s)	474, 867, 921
PspN4I	GGNNCC	4 cut(s)	25, 705, 866, 1102
PspPI	GGNCC	1 cut(s)	77
PsyI	GACNNNGTC	1 cut(s)	154
PvuII	CAGCTG	1 cut(s)	929
RsaI	GTAC	2 cut(s)	866, 904
RsaNI	GTAC	2 cut(s)	865, 903
RseI	CAYNNNNRTG	2 cut(s)	1095, 1162
SaqAI	TTAA	1 cut(s)	1044
SatI	GCNGC	4 cut(s)	141, 144, 672, 927
Sau3AI	GATC	5 cut(s)	594, 734, 799, 952, 1038
Sau96I	GGNCC	1 cut(s)	77
SchI	GAGTC	2 cut(s)	145, 1034
ScrFI	CCNGG	4 cut(s)	124, 476, 869, 923
SexAI	ACCWGGT	1 cut(s)	867
SfaNI	GCATC	3 cut(s)	835, 838, 1045
SfcI	CTRYAG	1 cut(s)	930
SfoI	GGCGCC	1 cut(s)	25
SgrAI	CRCCGGYG	1 cut(s)	176
SmiMI	CAYNNNNRTG	2 cut(s)	1095, 1162
SmlI	CTYRAG	1 cut(s)	52
SmoI	CTYRAG	1 cut(s)	52
Sse9I	AATT	1 cut(s)	259
SsiI	CCGC	4 cut(s)	141, 144, 165, 561
SspDI	GGCGCC	1 cut(s)	23
SspMI	CTAG	1 cut(s)	1050
StyD4I	CCNGG	4 cut(s)	122, 474, 867, 921
StyI	CCWWGG	2 cut(s)	396, 1104
TaaI	ACNGT	1 cut(s)	990
TaiI	ACGT	4 cut(s)	242, 549, 611, 1120
TaqI	TCGA	6 cut(s)	36, 66, 263, 525, 541, 961
TaqII	GACCGA	1 cut(s)	276
TasI	AATT	1 cut(s)	259
TauI	GCSGC	2 cut(s)	143, 146
TfiI	GAWTC	5 cut(s)	33, 185, 409, 538, 788
Tru1I	TTAA	1 cut(s)	1044
Tru9I	TTAA	1 cut(s)	1044
TscAI	CASTG	1 cut(s)	303
TseI	GCWGC	2 cut(s)	671, 926
TspDTI	ATGAA	4 cut(s)	636, 870, 923, 1107
TspRI	CASTG	1 cut(s)	303
Tth111I	GACNNNGTC	1 cut(s)	154
Van91I	CCANNNNNTGG	1 cut(s)	481
XapI	RAATTY	1 cut(s)	259
XmiI	GTMKAC	1 cut(s)	933
XspI	CTAG	1 cut(s)	1050
ZraI	GACGTC	1 cut(s)	240

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.