Prupe.4G088800_v2.0.a1

Belongs to the NPH3 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp04
OG0014576
Physical Location & Seq
Forward (+)
4389011 .. 4393301
4291 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.4G088800.1

Sequence Viewer

Length: 1914 bp
ATGGCTTGCATGAAATTGGGATCTAAAACTGATGCCTTCCATAGACAAGGACAGGCCTGGTTCTGCACCACTGGGCTTCCTAGTGACATTGTTGTTGAAGTTGGAGAGATGTCATTCCACCTTCATAAGTTTCCTTTGCTCTCAAGAAGTGGGATTATGGAAAGATTGATTTCCGAAGCATCTGAAGGAGAAGAAGAATGTGTCATAAACATCCATGATATTCCCGGTGGGGCAAAAACATTTGAGTTAGTAGCCAAGTTCTGCTACGGGGTGAAATTTGAGCTTACTGCTTCAAATGTTGTATACCTTCGATGTGCTGCTGAGCATCTTGAAATGACTGAGGAATGTGGGGAGGACAACTTAATCACACAAACTGAAGCCTTTCTCAATCAAGTAGTCCTTCGAAATTGGAAAGACTCTTTAAAGGCACTTCAGACTTGTGACGACATTCTCCCTCATGCTGAAGAACTCAACATTACAAAAAGGTGTATCGAGTCACTAGCCACAAAAGCATCTACGGATCCTAATCTGTTTGGGTGGCCTGTCAAGGAGCATGGAGGCCCCATGCAAAGTCCTGGCGGGAGTGTCCTGTGGAATGGGATAAGTACAGGGGCTAGACCAAAGAAATCAAGTTCAGACTGGTGGTACGAGGATGTTTCAACCTTGAGCTTGCCTCTCTATCAGAGGCTAATTTCGGTCATGGAATCTCGTGGCATTAAACAAGAGATTATTGCAGGCTCAATCACTTTTTATGCCAAAAAGTACCTTCCTGGGCTGAACCGGCGTCAAGGCACTAGTGACTCTAGTACCCGACTTGCACCAGTGTCCTTGGGGTCCCCACCATCAGAAGAAGACCAGAAGCTCTTACTTGAAGAGGTAGATCGGTTACTTCCATTTCAGAAGCGTGTAGTCCCAACCAAATTATTGTTTGGTCTACTTCGAACAGCCATGATTCTTCGAGCCAACCCTTCTTGCATATCTAATTTTGAGAAAAGGATCGGTATGCAACTTGATCAAGCTACTTTGGAAGATCTTTTGATGCCCAACTTCTCTTATTCCATGGAGACTCTATACAATGTTGACTGCGTGCAACGAATTCTAGATCACTTCCTCGCCATGGATCAAATTACAGGCGGGGGGGTGTCTCCATCTTCAATGGATGATGGCCAACTGATTGGGTCACCAGCAGGCCCTTCACTGACCCCAATAACAATGGTAGCCAAGCTCATTGATGGATACCTTGCAGAGGTTGCCCCTGATGTTAACTTGAAGCTCCCTAAGTTTCAAGCTCTTGCTGCTGCTGTTCCTGAATATGCTAGACCCTTGGATGATGGTCTTTATCGTGCTATAGATATTTATTTGAAGTCACACCCATGGTTGGCAGAGTCCGACAGGGAACAGCTCTGCCGGTTGATGGACTGCCAGAAGCTTTCCTTGGAAGCTTGCACTCATGCTGCACAGAATGAAAGGCTACCCCTGAGAATAGTTGTTCAAGTACTCTTCTTTGAGCAGCTTCAGCTTAGGACTTCAATTGCTGGTTGCTTTCTGGTTTCAGAAAATCTCGATGGATCAAGACATTTAAGAAGTGGGTTTACCGGGTCTAATGAGGGGGGCTGGGCCACGACTGTGAGGGAGAATCAGGTTTTGAAGGTTGGGATGGATAATATGAGGATGCGGGTATCGGAGCTCGAGAAGGAGTGTTCAAATATGAGACAAGAGATTGAGAAGTTAGGTCGTGTAAAAGGTTCTAGCACATGGGGAAATGTATCAAAGAAATTCGGGTTCAAGATAAAGTCCCAGATGTGCAGCGCTCAAGAGGGATCCGTTACCAATCAGCATAATGGGAATGAGAAAGTTGAGAAGTTAAAGGAGAGGCATGGAAAACATAAGAAAGACTCTGTTAAAGATGAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
BTB NPH3

Protein Analysis

638

Amino Acids

70.98

Weight (kDa)

6.04

Isoelectric Point (pI)

47.09

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014576)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G30440
fragaria_vesca FvH4_3g09890 FvH4_3g09890
malus_domestica MD05G1275200.v1.1 MD10G1254600.v1.1
prunus_persica Prupe.4G088800_v2.0.a1
pyrus_communis pycom05g25650 pycom10g21020
rosa_chinensis RchiOBHm_Chr5g0015601
rosa_laevigata RLG00000023153 RLG00000032212
rosa_multiflora Rmu_sc0003230.1_g000001
rosa_roxburghii Rroxscaffold_1G00060870
rosa_rugosa Rorug05G0028800 Rorug05G0028800
rosa_samantha Rh5AG122100
rosa_wichuraiana Rw5G010530

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 2 cut(s) 303, 934
AciI CCGC 3 cut(s) 579, 1134, 1675
AclWI GGATC 8 cut(s) 28, 515, 528, 1004, 1128, 1576, 1815, 1828
AcoI YGGCCR 1 cut(s) 1165
AcsI RAATTY 3 cut(s) 275, 1095, 1775
AcuI CTGAAG 5 cut(s) 204, 396, 416, 483, 1499
AcyI GRCGYC 1 cut(s) 784
AfaI GTAC 5 cut(s) 607, 647, 764, 808, 1497
AfeI AGCGCT 1 cut(s) 1810
AfiI CCNNNNNNNGG 4 cut(s) 1117, 1246, 1378, 1414
AhlI ACTAGT 1 cut(s) 794
AjnI CCWGG 3 cut(s) 56, 574, 769
AjuI GAANNNNNNNTTGG 2 cut(s) 1418, 1450
AleI CACNNNNGTG 1 cut(s) 1625
Alw21I GWGCWC 1 cut(s) 1689
Alw26I GTCTC 3 cut(s) 1058, 1149, 1705
AlwI GGATC 8 cut(s) 28, 515, 528, 1004, 1128, 1576, 1815, 1828
Ama87I CYCGRG 1 cut(s) 1688
Aor51HI AGCGCT 1 cut(s) 1810
AoxI GGCC 6 cut(s) 54, 539, 559, 1165, 1189, 1617
ApeKI GCWGC 6 cut(s) 317, 1295, 1298, 1454, 1510, 1806
ApoI RAATTY 3 cut(s) 275, 1095, 1775
Asp700I GAANNNNTTC 1 cut(s) 381
AspLEI GCGC 1 cut(s) 1811
AspS9I GGNCC 4 cut(s) 560, 834, 1190, 1617
AsuC2I CCSGG 2 cut(s) 225, 1597
AsuHPI GGTGA 2 cut(s) 283, 1173
AsuII TTCGAA 2 cut(s) 403, 940
AvaI CYCGRG 1 cut(s) 1688
AvaII GGWCC 1 cut(s) 834
BaeI ACNNNNGTAYC 2 cut(s) 790, 823
BalI TGGCCA 1 cut(s) 1167
BamHI GGATCC 2 cut(s) 520, 1820
BanII GRGCYC 1 cut(s) 1689
BarI GAAGNNNNNNTAC 2 cut(s) 1576, 1608
BauI CACGAG 1 cut(s) 708
BbsI GAAGAC 1 cut(s) 858
Bbv12I GWGCWC 1 cut(s) 1689
BbvI GCAGC 6 cut(s) 304, 1282, 1285, 1441, 1522, 1818
BccI CCATC 8 cut(s) 850, 1156, 1157, 1226, 1325, 1408, 1559, 1651
BciT130I CCWGG 3 cut(s) 58, 576, 771
BciVI GTATCC 1 cut(s) 1229
BclI TGATCA 1 cut(s) 1012
BcnI CCSGG 2 cut(s) 225, 1597
BcoDI GTCTC 3 cut(s) 1058, 1149, 1705
BcuI ACTAGT 1 cut(s) 794
BfaI CTAG 8 cut(s) 81, 500, 615, 795, 804, 1100, 1317, 1749
BfmI CTRYAG 1 cut(s) 1347
BfoI RGCGCY 1 cut(s) 1812
BfuI GTATCC 1 cut(s) 1229
BglII AGATCT 1 cut(s) 1030
BisI GCNGC 6 cut(s) 318, 1296, 1299, 1455, 1511, 1807
BlpI GCTNAGC 1 cut(s) 321
BlsI GCNGC 6 cut(s) 319, 1297, 1300, 1456, 1512, 1808
BmcAI AGTACT 1 cut(s) 1497
Bme1390I CCNGG 5 cut(s) 58, 225, 576, 771, 1597
Bme18I GGWCC 1 cut(s) 834
BmeT110I CYCGRG 1 cut(s) 1688
BmgT120I GGNCC 4 cut(s) 560, 834, 1190, 1617
BmiI GGNNCC 5 cut(s) 522, 562, 835, 836, 1822
BmrFI CCNGG 5 cut(s) 58, 225, 576, 771, 1597
BmrI ACTGGG 1 cut(s) 81
BmsI GCATC 6 cut(s) 22, 188, 334, 521, 1029, 1662
BmuI ACTGGG 1 cut(s) 81
BpiI GAAGAC 1 cut(s) 858
BplI GAGNNNNNCTC 2 cut(s) 658, 690
Bpu10I CCTNAGC 1 cut(s) 1520
Bpu1102I GCTNAGC 1 cut(s) 321
Bpu14I TTCGAA 2 cut(s) 403, 940
BpuEI CTTGAG 3 cut(s) 127, 685, 1797
BpuMI CCSGG 2 cut(s) 225, 1597
BsaBI GATNNNNATC 1 cut(s) 525
BsaHI GRCGYC 1 cut(s) 784
BsaJI CCNNGG 7 cut(s) 770, 828, 1059, 1116, 1323, 1373, 1434
Bsc4I CCNNNNNNNGG 4 cut(s) 1117, 1246, 1378, 1414
Bse118I RCCGGY 2 cut(s) 780, 1407
Bse1I ACTGG 3 cut(s) 76, 644, 821
Bse8I GATNNNNATC 1 cut(s) 525
BseBI CCWGG 3 cut(s) 58, 576, 771
BseDI CCNNGG 7 cut(s) 770, 828, 1059, 1116, 1323, 1373, 1434
BseGI GGATG 6 cut(s) 210, 658, 1165, 1333, 1662, 1677
BseJI GATNNNNATC 1 cut(s) 525
BseLI CCNNNNNNNGG 4 cut(s) 1117, 1246, 1378, 1414
BseMII CTCAG 3 cut(s) 312, 330, 1469
BseNI ACTGG 3 cut(s) 76, 644, 821
BseXI GCAGC 6 cut(s) 304, 1282, 1285, 1441, 1522, 1818
BseYI CCCAGC 1 cut(s) 1614
BsgI GTGCAG 3 cut(s) 49, 1440, 1825
BshFI GGCC 6 cut(s) 56, 541, 561, 1167, 1191, 1619
BsiHKAI GWGCWC 1 cut(s) 1689
BsiHKCI CYCGRG 1 cut(s) 1688
BsiSI CCGG 4 cut(s) 225, 781, 1408, 1596
BslFI GGGAC 3 cut(s) 820, 896, 1780
BslI CCNNNNNNNGG 4 cut(s) 1117, 1246, 1378, 1414
BsmAI GTCTC 3 cut(s) 1058, 1149, 1705
BsmFI GGGAC 3 cut(s) 820, 896, 1780
BsnI GGCC 6 cut(s) 56, 541, 561, 1167, 1191, 1619
BsoBI CYCGRG 1 cut(s) 1688
Bsp119I TTCGAA 2 cut(s) 403, 940
Bsp1286I GDGCHC 1 cut(s) 1689
Bsp1720I GCTNAGC 1 cut(s) 321
Bsp19I CCATGG 3 cut(s) 1059, 1116, 1373
BspACI CCGC 3 cut(s) 579, 1134, 1675
BspANI GGCC 6 cut(s) 56, 541, 561, 1167, 1191, 1619
BspCNI CTCAG 3 cut(s) 313, 331, 1470
BspLI GGNNCC 5 cut(s) 522, 562, 835, 836, 1822
BspPI GGATC 8 cut(s) 28, 515, 528, 1004, 1128, 1576, 1815, 1828
BspT104I TTCGAA 2 cut(s) 403, 940
BsrFI RCCGGY 2 cut(s) 780, 1407
BsrI ACTGG 3 cut(s) 76, 644, 821
BssAI RCCGGY 2 cut(s) 780, 1407
BssECI CCNNGG 7 cut(s) 770, 828, 1059, 1116, 1323, 1373, 1434
BssNAI GTATAC 1 cut(s) 304
BssNI GRCGYC 1 cut(s) 784
BssSI CACGAG 1 cut(s) 708
BssT1I CCWWGG 6 cut(s) 828, 1059, 1116, 1323, 1373, 1434
Bst1107I GTATAC 1 cut(s) 304
Bst2BI CACGAG 1 cut(s) 708
Bst2UI CCWGG 3 cut(s) 58, 576, 771
Bst4CI ACNGT 1 cut(s) 1627
Bst6I CTCTTC 2 cut(s) 867, 1505
BstACI GRCGYC 1 cut(s) 784
BstAPI GCANNNNNTGC 1 cut(s) 1250
BstBI TTCGAA 2 cut(s) 403, 940
BstC8I GCNNGC 6 cut(s) 7, 671, 736, 1088, 1189, 1444
BstDEI CTNAG 5 cut(s) 321, 339, 1278, 1478, 1520
BstDSI CCRYGG 3 cut(s) 1059, 1116, 1373
BstEII GGTNACC 1 cut(s) 1179
BstENI CCTNNNNNAGG 1 cut(s) 1244
BstF5I GGATG 6 cut(s) 210, 658, 1165, 1333, 1662, 1677
BstH2I RGCGCY 1 cut(s) 1812
BstHHI GCGC 1 cut(s) 1811
BstMAI GTCTC 3 cut(s) 1058, 1149, 1705
BstMWI GCNNNNNNNGC 5 cut(s) 509, 781, 1250, 1295, 1516
BstNI CCWGG 3 cut(s) 58, 576, 771
BstPI GGTNACC 1 cut(s) 1179
BstSCI CCNGG 5 cut(s) 56, 223, 574, 769, 1595
BstSFI CTRYAG 1 cut(s) 1347
BstV1I GCAGC 6 cut(s) 304, 1282, 1285, 1441, 1522, 1818
BstV2I GAAGAC 1 cut(s) 858
BstX2I RGATCY 4 cut(s) 20, 520, 1030, 1820
BstXI CCANNNNNNTGG 1 cut(s) 1175
BstYI RGATCY 4 cut(s) 20, 520, 1030, 1820
BstZ17I GTATAC 1 cut(s) 304
BsuI GTATCC 1 cut(s) 1229
BsuRI GGCC 6 cut(s) 56, 541, 561, 1167, 1191, 1619
BtgI CCRYGG 3 cut(s) 1059, 1116, 1373
BtsCI GGATG 6 cut(s) 210, 658, 1165, 1333, 1662, 1677
BtsIMutI CAGTG 3 cut(s) 69, 828, 1196
Cac8I GCNNGC 6 cut(s) 7, 671, 736, 1088, 1189, 1444
CfoI GCGC 1 cut(s) 1811
Cfr10I RCCGGY 2 cut(s) 780, 1407
Cfr13I GGNCC 4 cut(s) 560, 834, 1190, 1617
CseI GACGC 1 cut(s) 773
Csp6I GTAC 5 cut(s) 606, 646, 763, 807, 1496
CviQI GTAC 5 cut(s) 606, 646, 763, 807, 1496
DdeI CTNAG 5 cut(s) 321, 339, 1278, 1478, 1520
DraI TTTAAA 1 cut(s) 423
EaeI YGGCCR 1 cut(s) 1165
Eam1104I CTCTTC 2 cut(s) 867, 1505
EarI CTCTTC 2 cut(s) 867, 1505
Ecl136II GAGCTC 1 cut(s) 1687
Eco130I CCWWGG 6 cut(s) 828, 1059, 1116, 1323, 1373, 1434
Eco147I AGGCCT 1 cut(s) 56
Eco24I GRGCYC 1 cut(s) 1689
Eco47I GGWCC 1 cut(s) 834
Eco47III AGCGCT 1 cut(s) 1810
Eco53kI GAGCTC 1 cut(s) 1687
Eco57I CTGAAG 5 cut(s) 204, 396, 416, 483, 1499
Eco88I CYCGRG 1 cut(s) 1688
Eco91I GGTNACC 1 cut(s) 1179
EcoICRI GAGCTC 1 cut(s) 1687
EcoNI CCTNNNNNAGG 1 cut(s) 1244
EcoO109I RGGNCCY 3 cut(s) 560, 834, 1190
EcoO65I GGTNACC 1 cut(s) 1179
EcoRI GAATTC 1 cut(s) 1095
EcoRII CCWGG 3 cut(s) 56, 574, 769
EcoT14I CCWWGG 6 cut(s) 828, 1059, 1116, 1323, 1373, 1434
EcoT38I GRGCYC 1 cut(s) 1689
ErhI CCWWGG 6 cut(s) 828, 1059, 1116, 1323, 1373, 1434
FalI AAGNNNNNCTT 4 cut(s) 384, 416, 1418, 1450
FaqI GGGAC 3 cut(s) 820, 896, 1780
FauI CCCGC 3 cut(s) 572, 1127, 1668
FbaI TGATCA 1 cut(s) 1012
FblI GTMKAC 2 cut(s) 303, 934
Fnu4HI GCNGC 6 cut(s) 318, 1296, 1299, 1455, 1511, 1807
FokI GGATG 6 cut(s) 197, 665, 1172, 1340, 1669, 1684
FriOI GRGCYC 1 cut(s) 1689
Fsp4HI GCNGC 6 cut(s) 318, 1296, 1299, 1455, 1511, 1807
FspBI CTAG 8 cut(s) 81, 500, 615, 795, 804, 1100, 1317, 1749
GlaI GCGC 1 cut(s) 1810
GluI GCNGC 6 cut(s) 318, 1296, 1299, 1455, 1511, 1807
GsaI CCCAGC 1 cut(s) 1618
HaeII RGCGCY 1 cut(s) 1812
HaeIII GGCC 6 cut(s) 56, 541, 561, 1167, 1191, 1619
HapII CCGG 4 cut(s) 225, 781, 1408, 1596
HgaI GACGC 1 cut(s) 773
HhaI GCGC 1 cut(s) 1811
Hin1I GRCGYC 1 cut(s) 784
Hin6I GCGC 1 cut(s) 1809
HinP1I GCGC 1 cut(s) 1809
HincII GTYRAC 2 cut(s) 1081, 1264
HindII GTYRAC 2 cut(s) 1081, 1264
HindIII AAGCTT 2 cut(s) 1427, 1440
HinfI GANTC 9 cut(s) 416, 494, 704, 800, 952, 1066, 1385, 1636, 1895
HpaI GTTAAC 1 cut(s) 1264
HpaII CCGG 4 cut(s) 225, 781, 1408, 1596
HphI GGTGA 2 cut(s) 283, 1173
Hpy166II GTNNAC 5 cut(s) 304, 935, 1081, 1264, 1593
Hpy188III TCNNGA 9 cut(s) 144, 329, 1100, 1307, 1562, 1572, 1690, 1786, 1814
Hpy8I GTNNAC 5 cut(s) 304, 935, 1081, 1264, 1593
HpyCH4III ACNGT 1 cut(s) 1627
HpyF10VI GCNNNNNNNGC 5 cut(s) 509, 781, 1250, 1295, 1516
HpyF3I CTNAG 5 cut(s) 321, 339, 1278, 1478, 1520
Hsp92I GRCGYC 1 cut(s) 784
HspAI GCGC 1 cut(s) 1809
KflI GGGWCCC 1 cut(s) 834
Ksp22I TGATCA 1 cut(s) 1012
KspAI GTTAAC 1 cut(s) 1264
LmnI GCTCC 3 cut(s) 550, 1278, 1684
Lsp1109I GCAGC 6 cut(s) 304, 1282, 1285, 1441, 1522, 1818
LweI GCATC 6 cut(s) 22, 188, 334, 521, 1029, 1662
MaeI CTAG 8 cut(s) 81, 500, 615, 795, 804, 1100, 1317, 1749
MaeIII GTNAC 8 cut(s) 83, 440, 495, 797, 885, 1179, 1365, 1825
MfeI CAATTG 1 cut(s) 1530
MflI RGATCY 4 cut(s) 20, 520, 1030, 1820
MhlI GDGCHC 1 cut(s) 1689
MlsI TGGCCA 1 cut(s) 1167
MluNI TGGCCA 1 cut(s) 1167
MlyI GAGTC 6 cut(s) 410, 503, 794, 1060, 1394, 1889
MmeI TCCRAC 2 cut(s) 82, 1413
Mox20I TGGCCA 1 cut(s) 1167
MroXI GAANNNNTTC 1 cut(s) 381
MscI TGGCCA 1 cut(s) 1167
MseI TTAA 7 cut(s) 362, 422, 717, 1263, 1580, 1865, 1902
MslI CAYNNNNRTG 2 cut(s) 1372, 1625
Msp20I TGGCCA 1 cut(s) 1167
MspI CCGG 4 cut(s) 225, 781, 1408, 1596
MspR9I CCNGG 5 cut(s) 58, 225, 576, 771, 1597
MunI CAATTG 1 cut(s) 1530
MvaI CCWGG 3 cut(s) 58, 576, 771
MwoI GCNNNNNNNGC 5 cut(s) 509, 781, 1250, 1295, 1516
NciI CCSGG 2 cut(s) 225, 1597
NcoI CCATGG 3 cut(s) 1059, 1116, 1373
NlaIV GGNNCC 5 cut(s) 522, 562, 835, 836, 1822
NmuCI GTSAC 6 cut(s) 83, 440, 495, 797, 1179, 1365
NspV TTCGAA 2 cut(s) 403, 940
OliI CACNNNNGTG 1 cut(s) 1625
PaeR7I CTCGAG 1 cut(s) 1688
PceI AGGCCT 1 cut(s) 56
PdmI GAANNNNTTC 1 cut(s) 381
PfeI GAWTC 3 cut(s) 704, 952, 1636
PkrI GCNGC 6 cut(s) 319, 1297, 1300, 1456, 1512, 1808
PleI GAGTC 6 cut(s) 410, 502, 794, 1060, 1393, 1889
PpsI GAGTC 6 cut(s) 410, 502, 794, 1060, 1393, 1889
PpuMI RGGWCCY 1 cut(s) 834
Psp124BI GAGCTC 1 cut(s) 1689
Psp5II RGGWCCY 1 cut(s) 834
Psp6I CCWGG 3 cut(s) 56, 574, 769
PspEI GGTNACC 1 cut(s) 1179
PspFI CCCAGC 1 cut(s) 1614
PspGI CCWGG 3 cut(s) 56, 574, 769
PspN4I GGNNCC 5 cut(s) 522, 562, 835, 836, 1822
PspPI GGNCC 4 cut(s) 560, 834, 1190, 1617
PspPPI RGGWCCY 1 cut(s) 834
PsuI RGATCY 4 cut(s) 20, 520, 1030, 1820
RsaI GTAC 5 cut(s) 607, 647, 764, 808, 1497
RsaNI GTAC 5 cut(s) 606, 646, 763, 807, 1496
RseI CAYNNNNRTG 2 cut(s) 1372, 1625
SacI GAGCTC 1 cut(s) 1689
SaqAI TTAA 7 cut(s) 362, 422, 717, 1263, 1580, 1865, 1902
SatI GCNGC 6 cut(s) 318, 1296, 1299, 1455, 1511, 1807
Sau96I GGNCC 4 cut(s) 560, 834, 1190, 1617
ScaI AGTACT 1 cut(s) 1497
SchI GAGTC 6 cut(s) 410, 503, 794, 1060, 1394, 1889
ScrFI CCNGG 5 cut(s) 58, 225, 576, 771, 1597
SduI GDGCHC 1 cut(s) 1689
SfaNI GCATC 6 cut(s) 22, 188, 334, 521, 1029, 1662
SfcI CTRYAG 1 cut(s) 1347
Sfr274I CTCGAG 1 cut(s) 1688
SfuI TTCGAA 2 cut(s) 403, 940
SinI GGWCC 1 cut(s) 834
SlaI CTCGAG 1 cut(s) 1688
SmiMI CAYNNNNRTG 2 cut(s) 1372, 1625
SmlI CTYRAG 4 cut(s) 142, 664, 1688, 1812
SmoI CTYRAG 4 cut(s) 142, 664, 1688, 1812
SpeI ACTAGT 1 cut(s) 794
SseBI AGGCCT 1 cut(s) 56
SsiI CCGC 3 cut(s) 579, 1134, 1675
SspMI CTAG 8 cut(s) 81, 500, 615, 795, 804, 1100, 1317, 1749
SstI GAGCTC 1 cut(s) 1689
StuI AGGCCT 1 cut(s) 56
StyD4I CCNGG 5 cut(s) 56, 223, 574, 769, 1595
StyI CCWWGG 6 cut(s) 828, 1059, 1116, 1323, 1373, 1434
TaaI ACNGT 1 cut(s) 1627
TaqI TCGA 7 cut(s) 310, 403, 492, 940, 958, 1563, 1689
TaqII GACCGA 1 cut(s) 685
TatI WGTACW 2 cut(s) 605, 1495
TfiI GAWTC 3 cut(s) 704, 952, 1636
Tru1I TTAA 7 cut(s) 362, 422, 717, 1263, 1580, 1865, 1902
Tru9I TTAA 7 cut(s) 362, 422, 717, 1263, 1580, 1865, 1902
TscAI CASTG 3 cut(s) 76, 828, 1203
TseFI GTSAC 6 cut(s) 83, 440, 495, 797, 1179, 1365
TseI GCWGC 6 cut(s) 317, 1295, 1298, 1454, 1510, 1806
Tsp45I GTSAC 6 cut(s) 83, 440, 495, 797, 1179, 1365
TspDTI ATGAA 3 cut(s) 26, 113, 1479
TspGWI ACGGA 2 cut(s) 533, 1813
TspRI CASTG 3 cut(s) 76, 828, 1203
VpaK11BI GGWCC 1 cut(s) 834
XagI CCTNNNNNAGG 1 cut(s) 1244
XapI RAATTY 3 cut(s) 275, 1095, 1775
XbaI TCTAGA 1 cut(s) 1099
XhoI CTCGAG 1 cut(s) 1688
XmiI GTMKAC 2 cut(s) 303, 934
XmnI GAANNNNTTC 1 cut(s) 381
XspI CTAG 8 cut(s) 81, 500, 615, 795, 804, 1100, 1317, 1749
ZrmI AGTACT 1 cut(s) 1497
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.