Rorug05G0028800

Belongs to the NPH3 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0014576
Physical Location & Seq
Reverse (-)
1837391 .. 1839524
2134 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0028800.1

Sequence Viewer

Length: 1176 bp
ATGGGATCGAATGGCGTGCAACTCAGTCATGGCCTGCAACTCACAGGTATTCTTAGCACATGGGATCTTGAGACAGCCACCGCCGCAAGTGTCCGGCGGCATCTGGAGGAGGATTTTCAGGTCCATCTTTCGAATTCCATCCAAGAACAAATCGACATCTTCTTCGATGATGGGAAAGAGGATGAGAATGAAGGCAAAGGTAGAAGAACAAGACCGGAGATATGTACGTTGTCTCCACAGCTTCAAGACTTTGTTGGAGGGGGACCTGAAATGGCCCGTGCGGAGGCAATGAAGAAAATTGTGGCTTATATCCGGGAAAAGGGTTTGCAGATGAATTGTAACCATCTCATATTTGCAGATGATAAACTAACGTCCCTTTTTCCTGGCTGTACTAAATCTATCAGTATGTTTCAAATACATGACCTCCTATCCAAGGGTTTGCAGATGAATTGTAACCATCTCATATTTGCAGATGATAAACTAAAGTCCCTTTTTCCTGGCTGTACTAAATCTATCTGTATGTTTCAAATACATGACCTCCTATCCAAGCATGGTCATCTACAACCGCTTAAAGCTGGCAAAGATGAGCGCGGGGTGAGGAAGACGAACGATGAAGCAATATGTAAAAAATCTGAGAATTGTGAAGGTGATCAAGATAGGGTGAAGAAGAAGGGGAAGAATGTTACAGAGGAAGATGTGAGACCGTGGGATAATATGCCACAAGCTATTATGGTGAAAATCTTAAAGCTATTACCATTTCCGGATTGGTCATTCCACCCCTGCTATGTTTGCAGTTCATGGCAAGTGGCAGTCGCCGATGTAATGTTTCCACCTGAAAACCGTGAGCTTAATCTGCGAGTCCTTGATTCATATCCCTGGATATTCAGGCAAAGGTGGTTCTTTAAATACCTCAGGATTGCCTTAAATTCTCCATCCGCCATCTTTTGGAGAACGCTTTACTTGCCCCAGACTGCATTCATCAAAAATGATATCCTTAGTGAGATTGCTGAAAAGACACCGGAACTGCGTGAACTTTATGTACCTCAAAAGTTGTGGGAAGATGTTCTTCTTAAGTCGGTTGCACCTAAGTGGAAGAATTTGACAAATACATGGTTCGGCTACCACCAATTTTTCTTATCTCCAAGTAGGGCTGTCAATTTCGACACGAACCGATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
BTB NPH3

Protein Analysis

391

Amino Acids

45.07

Weight (kDa)

7.58

Isoelectric Point (pI)

41.37

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DEK_C PF08766 15 - 54 2.3e-06 DEK C terminal domain
SWIB PF02201 74 - 145 1.9e-16 SWIB/MDM2 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014576)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G30440
fragaria_vesca FvH4_3g09890 FvH4_3g09890
malus_domestica MD05G1275200.v1.1 MD10G1254600.v1.1
prunus_persica Prupe.4G088800_v2.0.a1
pyrus_communis pycom05g25650 pycom10g21020
rosa_chinensis RchiOBHm_Chr5g0015601
rosa_laevigata RLG00000023153 RLG00000032212
rosa_multiflora Rmu_sc0003230.1_g000001
rosa_roxburghii Rroxscaffold_1G00060870
rosa_rugosa Rorug05G0028800 Rorug05G0028800
rosa_samantha Rh5AG122100
rosa_wichuraiana Rw5G010530

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 945
AccII CGCG 1 cut(s) 591
AccIII TCCGGA 1 cut(s) 760
AciI CCGC 7 cut(s) 81, 84, 97, 281, 566, 591, 936
AclWI GGATC 2 cut(s) 13, 72
AcsI RAATTY 3 cut(s) 133, 925, 1096
AfaI GTAC 4 cut(s) 226, 391, 505, 1041
AfiI CCNNNNNNNGG 4 cut(s) 283, 319, 433, 945
AflII CTTAAG 1 cut(s) 1070
AgsI TTSAA 3 cut(s) 245, 413, 527
AjnI CCWGG 3 cut(s) 382, 496, 875
AleI CACNNNNGTG 1 cut(s) 1087
AluBI AGCT 5 cut(s) 241, 575, 725, 748, 847
AluI AGCT 5 cut(s) 241, 575, 725, 748, 847
Alw26I GTCTC 3 cut(s) 65, 237, 694
AlwI GGATC 2 cut(s) 13, 72
Aor13HI TCCGGA 1 cut(s) 760
AoxI GGCC 2 cut(s) 31, 273
ApoI RAATTY 3 cut(s) 133, 925, 1096
ArsI GACNNNNNNTTYG 2 cut(s) 146, 178
Asp700I GAANNNNTTC 1 cut(s) 1062
AspLEI GCGC 1 cut(s) 591
AspS9I GGNCC 3 cut(s) 121, 263, 274
AsuC2I CCSGG 1 cut(s) 314
AsuHPI GGTGA 4 cut(s) 607, 659, 673, 745
AsuII TTCGAA 1 cut(s) 131
AvaII GGWCC 2 cut(s) 121, 263
AxyI CCTNAGG 1 cut(s) 911
BbsI GAAGAC 1 cut(s) 608
BccI CCATC 7 cut(s) 132, 146, 164, 351, 465, 940, 947
BcgI CGANNNNNNTGC 1 cut(s) 32
BciT130I CCWGG 3 cut(s) 384, 498, 877
BclI TGATCA 1 cut(s) 649
BcnI CCSGG 1 cut(s) 314
BcoDI GTCTC 3 cut(s) 65, 237, 694
BfrI CTTAAG 1 cut(s) 1070
BisI GCNGC 2 cut(s) 84, 98
BlsI GCNGC 2 cut(s) 85, 99
Bme1390I CCNGG 4 cut(s) 314, 384, 498, 877
Bme18I GGWCC 2 cut(s) 121, 263
BmgT120I GGNCC 3 cut(s) 121, 263, 274
BmiI GGNNCC 1 cut(s) 264
BmrFI CCNGG 4 cut(s) 314, 384, 498, 877
BmsI GCATC 1 cut(s) 109
BpiI GAAGAC 1 cut(s) 608
BpmI CTGGAG 1 cut(s) 125
Bpu14I TTCGAA 1 cut(s) 131
BpuEI CTTGAG 1 cut(s) 89
BpuMI CCSGG 1 cut(s) 314
BsaBI GATNNNNATC 1 cut(s) 870
BsaI GGTCTC 1 cut(s) 694
BsaJI CCNNGG 3 cut(s) 432, 704, 875
BsaWI WCCGGW 3 cut(s) 214, 760, 1018
BsaXI ACNNNNNCTCC 6 cut(s) 217, 247, 408, 438, 522, 552
Bsc4I CCNNNNNNNGG 4 cut(s) 283, 319, 433, 945
Bse21I CCTNAGG 1 cut(s) 911
Bse3DI GCAATG 1 cut(s) 294
Bse8I GATNNNNATC 1 cut(s) 870
BseAI TCCGGA 1 cut(s) 760
BseBI CCWGG 3 cut(s) 384, 498, 877
BseDI CCNNGG 3 cut(s) 432, 704, 875
BseGI GGATG 3 cut(s) 138, 187, 932
BseJI GATNNNNATC 1 cut(s) 870
BseLI CCNNNNNNNGG 4 cut(s) 283, 319, 433, 945
BseMI GCAATG 1 cut(s) 294
BseMII CTCAG 3 cut(s) 37, 624, 925
BseRI GAGGAG 1 cut(s) 122
Bsh1236I CGCG 1 cut(s) 591
BshFI GGCC 2 cut(s) 33, 275
BsiSI CCGG 5 cut(s) 94, 215, 313, 761, 1019
BslFI GGGAC 3 cut(s) 276, 358, 472
BslI CCNNNNNNNGG 4 cut(s) 283, 319, 433, 945
BsmAI GTCTC 3 cut(s) 65, 237, 694
BsmFI GGGAC 3 cut(s) 276, 358, 472
BsmI GAATGC 1 cut(s) 974
BsnI GGCC 2 cut(s) 33, 275
Bso31I GGTCTC 1 cut(s) 694
Bsp119I TTCGAA 1 cut(s) 131
Bsp13I TCCGGA 1 cut(s) 760
Bsp143I GATC 3 cut(s) 5, 64, 649
BspACI CCGC 7 cut(s) 81, 84, 97, 281, 566, 591, 936
BspANI GGCC 2 cut(s) 33, 275
BspCNI CTCAG 3 cut(s) 36, 625, 924
BspEI TCCGGA 1 cut(s) 760
BspFNI CGCG 1 cut(s) 591
BspLI GGNNCC 1 cut(s) 264
BspPI GGATC 2 cut(s) 13, 72
BspT104I TTCGAA 1 cut(s) 131
BspTI CTTAAG 1 cut(s) 1070
BspTNI GGTCTC 1 cut(s) 694
BsrDI GCAATG 1 cut(s) 294
BssECI CCNNGG 3 cut(s) 432, 704, 875
BssMI GATC 3 cut(s) 5, 64, 649
BssT1I CCWWGG 1 cut(s) 432
Bst2UI CCWGG 3 cut(s) 384, 498, 877
Bst4CI ACNGT 2 cut(s) 705, 842
BstAFI CTTAAG 1 cut(s) 1070
BstBI TTCGAA 1 cut(s) 131
BstC8I GCNNGC 3 cut(s) 17, 35, 577
BstDEI CTNAG 6 cut(s) 23, 53, 633, 911, 995, 1086
BstDSI CCRYGG 1 cut(s) 704
BstENI CCTNNNNNAGG 1 cut(s) 431
BstF5I GGATG 3 cut(s) 138, 187, 932
BstFNI CGCG 1 cut(s) 591
BstHHI GCGC 1 cut(s) 591
BstKTI GATC 3 cut(s) 8, 67, 652
BstMAI GTCTC 3 cut(s) 65, 237, 694
BstMBI GATC 3 cut(s) 5, 64, 649
BstMWI GCNNNNNNNGC 4 cut(s) 83, 789, 853, 961
BstNI CCWGG 3 cut(s) 384, 498, 877
BstSCI CCNGG 4 cut(s) 312, 382, 496, 875
BstUI CGCG 1 cut(s) 591
BstV2I GAAGAC 1 cut(s) 608
BstX2I RGATCY 1 cut(s) 64
BstYI RGATCY 1 cut(s) 64
Bsu36I CCTNAGG 1 cut(s) 911
BsuRI GGCC 2 cut(s) 33, 275
BtgI CCRYGG 1 cut(s) 704
BtsCI GGATG 3 cut(s) 138, 187, 932
Cac8I GCNNGC 3 cut(s) 17, 35, 577
CfoI GCGC 1 cut(s) 591
Cfr13I GGNCC 3 cut(s) 121, 263, 274
Csp6I GTAC 4 cut(s) 225, 390, 504, 1040
CspCI CAANNNNNGTGG 2 cut(s) 1034, 1069
CviAII CATG 7 cut(s) 29, 60, 419, 533, 551, 798, 1110
CviQI GTAC 4 cut(s) 225, 390, 504, 1040
DdeI CTNAG 6 cut(s) 23, 53, 633, 911, 995, 1086
DpnI GATC 3 cut(s) 7, 66, 651
DpnII GATC 3 cut(s) 5, 64, 649
DraI TTTAAA 1 cut(s) 904
EciI GGCGGA 1 cut(s) 925
Eco130I CCWWGG 1 cut(s) 432
Eco31I GGTCTC 1 cut(s) 694
Eco32I GATATC 1 cut(s) 991
Eco47I GGWCC 2 cut(s) 121, 263
Eco81I CCTNAGG 1 cut(s) 911
EcoNI CCTNNNNNAGG 1 cut(s) 431
EcoO109I RGGNCCY 1 cut(s) 263
EcoRI GAATTC 1 cut(s) 133
EcoRII CCWGG 3 cut(s) 382, 496, 875
EcoRV GATATC 1 cut(s) 991
EcoT14I CCWWGG 1 cut(s) 432
ErhI CCWWGG 1 cut(s) 432
FaeI CATG 7 cut(s) 32, 63, 422, 536, 554, 801, 1113
FalI AAGNNNNNCTT 2 cut(s) 1050, 1082
FaqI GGGAC 3 cut(s) 276, 358, 472
FatI CATG 7 cut(s) 28, 59, 418, 532, 550, 797, 1109
FauI CCCGC 1 cut(s) 584
FbaI TGATCA 1 cut(s) 649
Fnu4HI GCNGC 2 cut(s) 84, 98
FokI GGATG 3 cut(s) 125, 194, 919
Fsp4HI GCNGC 2 cut(s) 84, 98
GlaI GCGC 1 cut(s) 590
GluI GCNGC 2 cut(s) 84, 98
GsuI CTGGAG 1 cut(s) 125
HaeIII GGCC 2 cut(s) 33, 275
HapII CCGG 5 cut(s) 94, 215, 313, 761, 1019
HhaI GCGC 1 cut(s) 591
Hin1II CATG 7 cut(s) 32, 63, 422, 536, 554, 801, 1113
Hin6I GCGC 1 cut(s) 589
HinP1I GCGC 1 cut(s) 589
HinfI GANTC 2 cut(s) 858, 866
HpaII CCGG 5 cut(s) 94, 215, 313, 761, 1019
HphI GGTGA 4 cut(s) 607, 659, 673, 745
Hpy166II GTNNAC 1 cut(s) 1031
Hpy188I TCNGA 1 cut(s) 634
Hpy188III TCNNGA 6 cut(s) 68, 104, 245, 653, 761, 913
Hpy8I GTNNAC 1 cut(s) 1031
HpyAV CCTTC 3 cut(s) 185, 638, 664
HpyCH4III ACNGT 2 cut(s) 705, 842
HpyCH4IV ACGT 2 cut(s) 227, 371
HpyCH4V TGCA 9 cut(s) 19, 37, 328, 356, 442, 470, 792, 974, 1082
HpyF10VI GCNNNNNNNGC 4 cut(s) 83, 789, 853, 961
HpyF3I CTNAG 6 cut(s) 23, 53, 633, 911, 995, 1086
HpySE526I ACGT 2 cut(s) 227, 371
Hsp92II CATG 7 cut(s) 32, 63, 422, 536, 554, 801, 1113
HspAI GCGC 1 cut(s) 589
Kpn2I TCCGGA 1 cut(s) 760
Ksp22I TGATCA 1 cut(s) 649
Kzo9I GATC 3 cut(s) 5, 64, 649
LweI GCATC 1 cut(s) 109
MaeII ACGT 2 cut(s) 227, 371
MaeIII GTNAC 3 cut(s) 338, 452, 682
MalI GATC 3 cut(s) 7, 66, 651
MboI GATC 3 cut(s) 5, 64, 649
MflI RGATCY 1 cut(s) 64
MluCI AATT 9 cut(s) 133, 297, 334, 448, 637, 925, 1096, 1127, 1156
MlyI GAGTC 1 cut(s) 867
MmeI TCCRAC 1 cut(s) 235
MroI TCCGGA 1 cut(s) 760
MroXI GAANNNNTTC 1 cut(s) 1062
MseI TTAA 6 cut(s) 570, 743, 849, 903, 923, 1071
MslI CAYNNNNRTG 1 cut(s) 1087
MspCI CTTAAG 1 cut(s) 1070
MspI CCGG 5 cut(s) 94, 215, 313, 761, 1019
MspR9I CCNGG 4 cut(s) 314, 384, 498, 877
Mva1269I GAATGC 1 cut(s) 974
MvaI CCWGG 3 cut(s) 384, 498, 877
MvnI CGCG 1 cut(s) 591
MwoI GCNNNNNNNGC 4 cut(s) 83, 789, 853, 961
NciI CCSGG 1 cut(s) 314
NdeII GATC 3 cut(s) 5, 64, 649
NlaIII CATG 7 cut(s) 32, 63, 422, 536, 554, 801, 1113
NlaIV GGNNCC 1 cut(s) 264
NspV TTCGAA 1 cut(s) 131
OliI CACNNNNGTG 1 cut(s) 1087
PctI GAATGC 1 cut(s) 974
PdmI GAANNNNTTC 1 cut(s) 1062
PfeI GAWTC 1 cut(s) 866
PflMI CCANNNNNTGG 1 cut(s) 945
PfoI TCCNGGA 1 cut(s) 312
PkrI GCNGC 2 cut(s) 85, 99
PleI GAGTC 1 cut(s) 866
PpsI GAGTC 1 cut(s) 866
PpuMI RGGWCCY 1 cut(s) 263
Psp5II RGGWCCY 1 cut(s) 263
Psp6I CCWGG 3 cut(s) 382, 496, 875
PspGI CCWGG 3 cut(s) 382, 496, 875
PspN4I GGNNCC 1 cut(s) 264
PspPI GGNCC 3 cut(s) 121, 263, 274
PspPPI RGGWCCY 1 cut(s) 263
PsrI GAACNNNNNNTAC 2 cut(s) 1023, 1055
PsuI RGATCY 1 cut(s) 64
RsaI GTAC 4 cut(s) 226, 391, 505, 1041
RsaNI GTAC 4 cut(s) 225, 390, 504, 1040
RseI CAYNNNNRTG 1 cut(s) 1087
SaqAI TTAA 6 cut(s) 570, 743, 849, 903, 923, 1071
SatI GCNGC 2 cut(s) 84, 98
Sau3AI GATC 3 cut(s) 5, 64, 649
Sau96I GGNCC 3 cut(s) 121, 263, 274
SchI GAGTC 1 cut(s) 867
ScrFI CCNGG 4 cut(s) 314, 384, 498, 877
SfaNI GCATC 1 cut(s) 109
SfuI TTCGAA 1 cut(s) 131
SinI GGWCC 2 cut(s) 121, 263
SmiMI CAYNNNNRTG 1 cut(s) 1087
SmlI CTYRAG 2 cut(s) 68, 1070
SmoI CTYRAG 2 cut(s) 68, 1070
Sse9I AATT 9 cut(s) 133, 297, 334, 448, 637, 925, 1096, 1127, 1156
SsiI CCGC 7 cut(s) 81, 84, 97, 281, 566, 591, 936
StyD4I CCNGG 4 cut(s) 312, 382, 496, 875
StyI CCWWGG 1 cut(s) 432
TaaI ACNGT 2 cut(s) 705, 842
TaiI ACGT 2 cut(s) 230, 374
TaqI TCGA 5 cut(s) 8, 131, 153, 165, 1161
TasI AATT 9 cut(s) 133, 297, 334, 448, 637, 925, 1096, 1127, 1156
TatI WGTACW 2 cut(s) 389, 503
TauI GCSGC 2 cut(s) 86, 100
TfiI GAWTC 1 cut(s) 866
Tru1I TTAA 6 cut(s) 570, 743, 849, 903, 923, 1071
Tru9I TTAA 6 cut(s) 570, 743, 849, 903, 923, 1071
TspDTI ATGAA 8 cut(s) 204, 305, 347, 461, 627, 786, 858, 967
Van91I CCANNNNNTGG 1 cut(s) 945
Vha464I CTTAAG 1 cut(s) 1070
VpaK11BI GGWCC 2 cut(s) 121, 263
XagI CCTNNNNNAGG 1 cut(s) 431
XapI RAATTY 3 cut(s) 133, 925, 1096
XcmI CCANNNNNNNNNTGG 1 cut(s) 762
XmnI GAANNNNTTC 1 cut(s) 1062
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.