RLG00000023153

Belongs to the NPH3 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr5
OG0014576
Physical Location & Seq
Forward (+)
18990487 .. 18990975
489 bp
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UTR
Exon/CDS
Intron
RLM00000023153

Sequence Viewer

Length: 375 bp
ATGGTAGCCAAACTCATTGATGGATACCTTGCAGAAGTTACTCCTGATGTTAATTTGAAGCACCCCAAGTTTCAAGTATTGGCTGCTATTGTTCCTGAATATGTCAGGCACTTGGATGATGATCTTTATCGAGCTATAGATATATATTTAAAGTCACACCCATGGTTGGCCGAGGCTGAAAGAGAACAGCTCTACAGGTCTTCAATTGCCAGCTACTTTCTGGTTTCAGAAAATCTGGATGGATCAAGGCAGTTAAGAAATGGGTTATCTAGCTTTTCGGGGTCTAATGAGGGAAGAGGTTGGGCGACTACTGTGAGGGAGAATCAGGTTTTGAAGGCCGGGATGGATGGTATGAGAAGGAGTCTTCCCACATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
BTB NPH3

Protein Analysis

125

Amino Acids

14.03

Weight (kDa)

6.28

Isoelectric Point (pI)

27.18

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NPH3 PF03000 1 - 64 2.3e-27 NPH3 family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014576)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G30440
fragaria_vesca FvH4_3g09890 FvH4_3g09890
malus_domestica MD05G1275200.v1.1 MD10G1254600.v1.1
prunus_persica Prupe.4G088800_v2.0.a1
pyrus_communis pycom05g25650 pycom10g21020
rosa_chinensis RchiOBHm_Chr5g0015601
rosa_laevigata RLG00000023153 RLG00000032212
rosa_multiflora Rmu_sc0003230.1_g000001
rosa_roxburghii Rroxscaffold_1G00060870
rosa_rugosa Rorug05G0028800 Rorug05G0028800
rosa_samantha Rh5AG122100
rosa_wichuraiana Rw5G010530

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 250
AcoI YGGCCR 1 cut(s) 168
AfiI CCNNNNNNNGG 1 cut(s) 166
AgsI TTSAA 4 cut(s) 58, 74, 204, 334
AluBI AGCT 4 cut(s) 134, 190, 213, 273
AluI AGCT 4 cut(s) 134, 190, 213, 273
AlwI GGATC 1 cut(s) 250
AoxI GGCC 2 cut(s) 168, 336
ApeKI GCWGC 1 cut(s) 83
AsuC2I CCSGG 1 cut(s) 340
BbsI GAAGAC 2 cut(s) 192, 356
BbvI GCAGC 1 cut(s) 70
BccI CCATC 4 cut(s) 14, 233, 337, 341
BciVI GTATCC 1 cut(s) 17
BcnI CCSGG 1 cut(s) 340
BfaI CTAG 1 cut(s) 270
BfmI CTRYAG 2 cut(s) 135, 193
BfuI GTATCC 1 cut(s) 17
BisI GCNGC 1 cut(s) 84
BlsI GCNGC 1 cut(s) 85
Bme1390I CCNGG 1 cut(s) 340
BmrFI CCNGG 1 cut(s) 340
BpiI GAAGAC 2 cut(s) 192, 356
BplI GAGNNNNNCTC 2 cut(s) 174, 206
BpuMI CCSGG 1 cut(s) 340
BsaBI GATNNNNATC 2 cut(s) 120, 126
BsaJI CCNNGG 2 cut(s) 161, 171
Bsc4I CCNNNNNNNGG 1 cut(s) 166
Bse8I GATNNNNATC 2 cut(s) 120, 126
BseDI CCNNGG 2 cut(s) 161, 171
BseGI GGATG 4 cut(s) 121, 244, 348, 352
BseJI GATNNNNATC 2 cut(s) 120, 126
BseLI CCNNNNNNNGG 1 cut(s) 166
BseXI GCAGC 1 cut(s) 70
BshFI GGCC 2 cut(s) 170, 338
BsiSI CCGG 1 cut(s) 339
BslI CCNNNNNNNGG 1 cut(s) 166
BsnI GGCC 2 cut(s) 170, 338
Bsp143I GATC 2 cut(s) 121, 242
Bsp19I CCATGG 1 cut(s) 161
BspANI GGCC 2 cut(s) 170, 338
BspPI GGATC 1 cut(s) 250
BssECI CCNNGG 2 cut(s) 161, 171
BssMI GATC 2 cut(s) 121, 242
BssT1I CCWWGG 1 cut(s) 161
Bst4CI ACNGT 1 cut(s) 313
Bst6I CTCTTC 1 cut(s) 289
BstC8I GCNNGC 1 cut(s) 211
BstDSI CCRYGG 1 cut(s) 161
BstF5I GGATG 4 cut(s) 121, 244, 348, 352
BstKTI GATC 2 cut(s) 124, 245
BstMBI GATC 2 cut(s) 121, 242
BstSCI CCNGG 1 cut(s) 338
BstSFI CTRYAG 2 cut(s) 135, 193
BstV1I GCAGC 1 cut(s) 70
BstV2I GAAGAC 2 cut(s) 192, 356
BsuI GTATCC 1 cut(s) 17
BsuRI GGCC 2 cut(s) 170, 338
BtgI CCRYGG 1 cut(s) 161
BtsCI GGATG 4 cut(s) 121, 244, 348, 352
Cac8I GCNNGC 1 cut(s) 211
CviAII CATG 2 cut(s) 162, 372
CviJI RGCY 9 cut(s) 8, 83, 134, 170, 176, 190, 213, 273, 338
CviKI_1 RGCY 9 cut(s) 8, 83, 134, 170, 176, 190, 213, 273, 338
DpnI GATC 2 cut(s) 123, 244
DpnII GATC 2 cut(s) 121, 242
DraI TTTAAA 1 cut(s) 150
EaeI YGGCCR 1 cut(s) 168
Eam1104I CTCTTC 1 cut(s) 289
EarI CTCTTC 1 cut(s) 289
Eco130I CCWWGG 1 cut(s) 161
EcoT14I CCWWGG 1 cut(s) 161
ErhI CCWWGG 1 cut(s) 161
FaeI CATG 2 cut(s) 165, 375
FaiI YATR 7 cut(s) 102, 137, 143, 145, 163, 353, 373
FatI CATG 2 cut(s) 161, 371
Fnu4HI GCNGC 1 cut(s) 84
FokI GGATG 4 cut(s) 128, 251, 355, 359
Fsp4HI GCNGC 1 cut(s) 84
FspBI CTAG 1 cut(s) 270
GluI GCNGC 1 cut(s) 84
HaeIII GGCC 2 cut(s) 170, 338
HapII CCGG 1 cut(s) 339
Hin1II CATG 2 cut(s) 165, 375
HinfI GANTC 2 cut(s) 322, 361
HpaII CCGG 1 cut(s) 339
Hpy188I TCNGA 1 cut(s) 229
Hpy188III TCNNGA 3 cut(s) 44, 95, 236
HpyAV CCTTC 2 cut(s) 328, 351
HpyCH4III ACNGT 1 cut(s) 313
HpyCH4V TGCA 1 cut(s) 32
Hsp92II CATG 2 cut(s) 165, 375
Kzo9I GATC 2 cut(s) 121, 242
LpnPI CCDG 9 cut(s) 57, 91, 108, 181, 206, 221, 223, 311, 352
Lsp1109I GCAGC 1 cut(s) 70
MaeI CTAG 1 cut(s) 270
MaeIII GTNAC 2 cut(s) 37, 153
MalI GATC 2 cut(s) 123, 244
MboI GATC 2 cut(s) 121, 242
MboII GAAGA 3 cut(s) 192, 306, 356
MfeI CAATTG 1 cut(s) 204
MluCI AATT 2 cut(s) 52, 204
MlyI GAGTC 1 cut(s) 370
MnlI CCTC 4 cut(s) 166, 283, 290, 309
MseI TTAA 3 cut(s) 51, 149, 254
MslI CAYNNNNRTG 2 cut(s) 114, 160
MspI CCGG 1 cut(s) 339
MspR9I CCNGG 1 cut(s) 340
MunI CAATTG 1 cut(s) 204
NciI CCSGG 1 cut(s) 340
NcoI CCATGG 1 cut(s) 161
NdeII GATC 2 cut(s) 121, 242
NlaIII CATG 2 cut(s) 165, 375
NmeAIII GCCGAG 1 cut(s) 196
NmuCI GTSAC 1 cut(s) 153
PfeI GAWTC 1 cut(s) 322
PkrI GCNGC 1 cut(s) 85
PleI GAGTC 1 cut(s) 369
PpsI GAGTC 1 cut(s) 369
RseI CAYNNNNRTG 2 cut(s) 114, 160
SaqAI TTAA 3 cut(s) 51, 149, 254
SatI GCNGC 1 cut(s) 84
Sau3AI GATC 2 cut(s) 121, 242
SchI GAGTC 1 cut(s) 370
ScrFI CCNGG 1 cut(s) 340
SetI ASST 8 cut(s) 30, 136, 192, 200, 215, 275, 301, 330
SfcI CTRYAG 2 cut(s) 135, 193
SmiMI CAYNNNNRTG 2 cut(s) 114, 160
Sse9I AATT 2 cut(s) 52, 204
SspMI CTAG 1 cut(s) 270
StyD4I CCNGG 1 cut(s) 338
StyI CCWWGG 1 cut(s) 161
TaaI ACNGT 1 cut(s) 313
TaqI TCGA 1 cut(s) 130
TasI AATT 2 cut(s) 52, 204
TfiI GAWTC 1 cut(s) 322
Tru1I TTAA 3 cut(s) 51, 149, 254
Tru9I TTAA 3 cut(s) 51, 149, 254
TseFI GTSAC 1 cut(s) 153
TseI GCWGC 1 cut(s) 83
Tsp45I GTSAC 1 cut(s) 153
XcmI CCANNNNNNNNNTGG 1 cut(s) 217
XspI CTAG 1 cut(s) 270
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.