Rroxscaffold_1G00060870

Belongs to the NPH3 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0014576
Physical Location & Seq
Reverse (-)
83086879 .. 83091725
4847 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00060870.1

Sequence Viewer

Length: 1917 bp
ATGGCTTGCATGAAATTGGGATCTAAAAGTGATGCGTTCCATAGACAAGGACAGGCCTGGTTTTGCACCACTGGGCTTCCTAGTGATGTTGTTGTTGAAGTTGGAGAAATGTCATTCCATCTTCATAAGTTTCCTTTGCTCTCAAGAAGTGGGGTCATGGAAAGATTGATTTCAGAAGCATCTGAAGAAGGAGATGAAGCATGCAATATAAACCTCCCTGATATTCCTGGTGGGGCTAAAACATTCGAATTGGTAGCCAAGTTCTGCTATGGGGTGAAACTTGAACTGACTGCTTCAAATGTTGTATACCTCCGATGTGCTGCTGAGCACCTTGAAATGACTGAAGAGTATGGGGAAGGCAATTTAATCACCCACACCGAGTCCTTTCTCAATCAAGTAGTTCTTCGAAATTGGAAAGATTCTCTGAAGGCACTTCAGACATGTGATGATATTCTCCCTTATGCTGAAGAACTTAACATTACAAAGCGATGCATTGAGTCACTAGCCACAAAAGCATCTACTGATCCTAATCTGTTTGGGTGGCCTGTTAAGGAGCATGGAGGCCCCATGCAAAGTCCTGGCGGGAGTGTCCTGTGGAATGGGATAAGTACAGGAGCAAGACCCAAAAAATCAAGTTCAGATTGGTGGTATGAGGATGCGTCAACCTTAAGCTTGCCTCTATATCAGAGATTGATTTCCGTCATGGAATCTCGTGGTATCAAACAAGAGATTATTGCAGGGTCAATCACTTCATATGCTAAGAAGTATCTTCCTGGGCTAAGTCGGCGTCAAGGAACTAGTGAGTCTAGTACCCGTCTTGCACCAGCGTCTTTGGGCTCCCCACCATCTGAAGAAGACCAGAAGCTTTTACTTGAAGAGGTGGATCGGCTACTTCCATTGCAGAAGCGTGTGGTCCCAACCAAATTCCTATTTGGTCTACTTCGGACAGCCATGATTCTTCGAGCCAACCCATCCTGCATCTCAAATTTTGAGAAAAGGATTGGTATGCAGCTTGATCAAGCTACTCTGGAAGATCTTTTGATGCCGAACTTCTCTTATTCCATGGAGACACTCTACAATGTCGATTGTGTACAACGTATATTAGACCACTTCCTTGCCATGGAACAGATTGCAGGTGGGGCATCTCCAGGTTCGGTCGAGGATGGCCAGCTGATTGGGTCACCTTCATTGACACCAGTCACGATGGTAGCCAAACTCATTGATGGATACCTTGCAGAAGTTGCTCCTGATGTTAATTTGAAGCTCCCCAAGTTTCAAGCTTTGGCTGCTGCTGTTCCTGAATATGCCAGACACTTGGATGATGGTCTCTATCGAGCTATAGATATATATTTAAAGTCACACCCATGGTTGGCTGAGGCTGAAAGAGAACAGCTCTGCCGGTTGATGGACTGCCAGAAGCTTTCCTTGGAAGCTTGCACTCATGCTGCCCAGAATGAGAGGCTACCGTTAAGAATAGTTGTTCAAGTTCTCTTCTTTGAGCAGCTTCAACTTCGGTCTTCAATTGCCGGCTGCTTTCTGGTTTCAGACAATCTTGATGGATCAAGGCAGTTAAGAAATGGGTTCTCTGGCTTTTCGGGGTCTAATGAGGGAGGAGGTTGGGCGACCACGGTGAGGGAGAATCAGGTTTTGAAGGTCGGAATGGATAGTATGAGGATGCGTGTATCCGAGCTTGAGAAGGAGTGTTCCAACATGAGACAGGAGATCGAGAAGTTAGGTAAGGTAAAAGGTTCTAGCACATGGGGAAACGTATCGAAGAAGTTTGGGTTCAAGATCAAGTCCCAGATGTGCAGTGCTCAGGAGGGATCCGTTAGCAAACAGCTCGACGGAAATGAAAAAGTTGAGAAATTAAAGGAGAGGCATGGGAAGCAAAAGAAAGCCTCCTTAAAAGATGAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
BTB NPH3

Protein Analysis

638

Amino Acids

70.71

Weight (kDa)

6.1

Isoelectric Point (pI)

46.68

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
BTB PF00651 26 - 115 2.9e-09 BTB/POZ domain
NPH3 PF03000 214 - 479 2.1e-97 NPH3 family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014576)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G30440
fragaria_vesca FvH4_3g09890 FvH4_3g09890
malus_domestica MD05G1275200.v1.1 MD10G1254600.v1.1
prunus_persica Prupe.4G088800_v2.0.a1
pyrus_communis pycom05g25650 pycom10g21020
rosa_chinensis RchiOBHm_Chr5g0015601
rosa_laevigata RLG00000023153 RLG00000032212
rosa_multiflora Rmu_sc0003230.1_g000001
rosa_roxburghii Rroxscaffold_1G00060870
rosa_rugosa Rorug05G0028800 Rorug05G0028800
rosa_samantha Rh5AG122100
rosa_wichuraiana Rw5G010530

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 1124
Acc36I ACCTGC 1 cut(s) 1124
AccI GTMKAC 2 cut(s) 306, 937
AciI CCGC 1 cut(s) 582
AclWI GGATC 6 cut(s) 28, 518, 891, 1567, 1818, 1831
AcoI YGGCCR 1 cut(s) 1165
AcsI RAATTY 2 cut(s) 923, 985
AcuI CTGAAG 6 cut(s) 204, 363, 419, 446, 486, 870
AcyI GRCGYC 1 cut(s) 787
AfaI GTAC 3 cut(s) 610, 811, 1092
AfiI CCNNNNNNNGG 4 cut(s) 1120, 1369, 1405, 1632
AflII CTTAAG 1 cut(s) 667
AflIII ACRYGT 1 cut(s) 440
AhlI ACTAGT 1 cut(s) 797
AjnI CCWGG 5 cut(s) 56, 226, 577, 772, 1147
AjuI GAANNNNNNNTTGG 2 cut(s) 1409, 1441
Alw21I GWGCWC 2 cut(s) 330, 1816
Alw26I GTCTC 3 cut(s) 1061, 1331, 1708
AlwI GGATC 6 cut(s) 28, 518, 891, 1567, 1818, 1831
AoxI GGCC 4 cut(s) 54, 542, 562, 1165
ApeKI GCWGC 7 cut(s) 320, 1009, 1286, 1289, 1445, 1501, 1530
ApoI RAATTY 2 cut(s) 923, 985
AspS9I GGNCC 2 cut(s) 563, 913
AsuHPI GGTGA 4 cut(s) 286, 361, 1173, 1642
AsuII TTCGAA 2 cut(s) 246, 406
AvaII GGWCC 1 cut(s) 913
BalI TGGCCA 1 cut(s) 1167
BamHI GGATCC 1 cut(s) 1823
BanII GRGCYC 1 cut(s) 839
BauI CACGAG 1 cut(s) 711
BbsI GAAGAC 2 cut(s) 861, 1509
Bbv12I GWGCWC 2 cut(s) 330, 1816
BbvCI CCTCAGC 1 cut(s) 1374
BbvI GCAGC 7 cut(s) 307, 1021, 1273, 1276, 1432, 1513, 1517
BccI CCATC 9 cut(s) 126, 853, 979, 1157, 1198, 1217, 1316, 1399, 1550
BcgI CGANNNNNNTGC 2 cut(s) 1822, 1856
BciT130I CCWGG 5 cut(s) 58, 228, 579, 774, 1149
BciVI GTATCC 2 cut(s) 1220, 1693
BclI TGATCA 1 cut(s) 1015
BcoDI GTCTC 3 cut(s) 1061, 1331, 1708
BcuI ACTAGT 1 cut(s) 797
BfaI CTAG 5 cut(s) 81, 503, 798, 807, 1752
BfmI CTRYAG 1 cut(s) 1338
BfrI CTTAAG 1 cut(s) 667
BfuAI ACCTGC 1 cut(s) 1124
BfuI GTATCC 2 cut(s) 1220, 1693
BglII AGATCT 1 cut(s) 1033
BisI GCNGC 7 cut(s) 321, 1010, 1287, 1290, 1446, 1502, 1531
BlpI GCTNAGC 1 cut(s) 324
BlsI GCNGC 7 cut(s) 322, 1011, 1288, 1291, 1447, 1503, 1532
Bme1390I CCNGG 5 cut(s) 58, 228, 579, 774, 1149
Bme18I GGWCC 1 cut(s) 913
BmgT120I GGNCC 2 cut(s) 563, 913
BmiI GGNNCC 4 cut(s) 565, 838, 915, 1825
BmrFI CCNGG 5 cut(s) 58, 228, 579, 774, 1149
BmrI ACTGGG 1 cut(s) 81
BmsI GCATC 9 cut(s) 22, 188, 479, 524, 646, 987, 1032, 1151, 1665
BmuI ACTGGG 1 cut(s) 81
BoxI GACNNNNGTC 1 cut(s) 1196
BpiI GAAGAC 2 cut(s) 861, 1509
BplI GAGNNNNNCTC 2 cut(s) 1377, 1409
BpmI CTGGAG 1 cut(s) 1131
Bpu10I CCTNAGC 2 cut(s) 1374, 1815
Bpu1102I GCTNAGC 1 cut(s) 324
Bpu14I TTCGAA 2 cut(s) 246, 406
BpuEI CTTGAG 2 cut(s) 127, 1712
BsaBI GATNNNNATC 1 cut(s) 528
BsaHI GRCGYC 1 cut(s) 787
BsaI GGTCTC 1 cut(s) 1331
BsaJI CCNNGG 6 cut(s) 773, 1062, 1119, 1364, 1425, 1626
Bsc4I CCNNNNNNNGG 4 cut(s) 1120, 1369, 1405, 1632
Bse118I RCCGGY 2 cut(s) 1398, 1526
Bse1I ACTGG 2 cut(s) 76, 1196
Bse3DI GCAATG 1 cut(s) 896
Bse8I GATNNNNATC 1 cut(s) 528
BseBI CCWGG 5 cut(s) 58, 228, 579, 774, 1149
BseDI CCNNGG 6 cut(s) 773, 1062, 1119, 1364, 1425, 1626
BseGI GGATG 5 cut(s) 661, 971, 1168, 1324, 1680
BseJI GATNNNNATC 1 cut(s) 528
BseLI CCNNNNNNNGG 4 cut(s) 1120, 1369, 1405, 1632
BseMI GCAATG 1 cut(s) 896
BseMII CTCAG 3 cut(s) 315, 1365, 1829
BseNI ACTGG 2 cut(s) 76, 1196
BseRI GAGGAG 1 cut(s) 1626
BseXI GCAGC 7 cut(s) 307, 1021, 1273, 1276, 1432, 1513, 1517
BsgI GTGCAG 1 cut(s) 1828
Bsh1285I CGRYCG 1 cut(s) 1158
BshFI GGCC 4 cut(s) 56, 544, 564, 1167
BsiEI CGRYCG 1 cut(s) 1158
BsiHKAI GWGCWC 2 cut(s) 330, 1816
BsiSI CCGG 2 cut(s) 1399, 1527
BslFI GGGAC 2 cut(s) 899, 1783
BslI CCNNNNNNNGG 4 cut(s) 1120, 1369, 1405, 1632
BsmAI GTCTC 3 cut(s) 1061, 1331, 1708
BsmFI GGGAC 2 cut(s) 899, 1783
BsnI GGCC 4 cut(s) 56, 544, 564, 1167
Bso31I GGTCTC 1 cut(s) 1331
Bsp119I TTCGAA 2 cut(s) 246, 406
Bsp1286I GDGCHC 3 cut(s) 330, 839, 1816
Bsp1407I TGTACA 1 cut(s) 1090
Bsp143I GATC 9 cut(s) 20, 523, 883, 1015, 1033, 1559, 1722, 1791, 1823
Bsp1720I GCTNAGC 1 cut(s) 324
Bsp19I CCATGG 3 cut(s) 1062, 1119, 1364
BspACI CCGC 1 cut(s) 582
BspANI GGCC 4 cut(s) 56, 544, 564, 1167
BspCNI CTCAG 3 cut(s) 316, 1366, 1828
BspLI GGNNCC 4 cut(s) 565, 838, 915, 1825
BspMI ACCTGC 1 cut(s) 1124
BspPI GGATC 6 cut(s) 28, 518, 891, 1567, 1818, 1831
BspT104I TTCGAA 2 cut(s) 246, 406
BspTI CTTAAG 1 cut(s) 667
BspTNI GGTCTC 1 cut(s) 1331
BsrDI GCAATG 1 cut(s) 896
BsrFI RCCGGY 2 cut(s) 1398, 1526
BsrGI TGTACA 1 cut(s) 1090
BsrI ACTGG 2 cut(s) 76, 1196
BssAI RCCGGY 2 cut(s) 1398, 1526
BssECI CCNNGG 6 cut(s) 773, 1062, 1119, 1364, 1425, 1626
BssMI GATC 9 cut(s) 20, 523, 883, 1015, 1033, 1559, 1722, 1791, 1823
BssNAI GTATAC 1 cut(s) 307
BssNI GRCGYC 1 cut(s) 787
BssSI CACGAG 1 cut(s) 711
BssT1I CCWWGG 4 cut(s) 1062, 1119, 1364, 1425
Bst1107I GTATAC 1 cut(s) 307
Bst2BI CACGAG 1 cut(s) 711
Bst2UI CCWGG 5 cut(s) 58, 228, 579, 774, 1149
Bst4CI ACNGT 2 cut(s) 1467, 1630
Bst6I CTCTTC 3 cut(s) 339, 870, 1496
BstACI GRCGYC 1 cut(s) 787
BstAFI CTTAAG 1 cut(s) 667
BstAPI GCANNNNNTGC 1 cut(s) 1241
BstAUI TGTACA 1 cut(s) 1090
BstBI TTCGAA 2 cut(s) 246, 406
BstC8I GCNNGC 6 cut(s) 7, 202, 674, 1169, 1435, 1528
BstDEI CTNAG 5 cut(s) 324, 759, 779, 1374, 1815
BstDSI CCRYGG 4 cut(s) 1062, 1119, 1364, 1626
BstEII GGTNACC 1 cut(s) 1179
BstF5I GGATG 5 cut(s) 661, 971, 1168, 1324, 1680
BstKTI GATC 9 cut(s) 23, 526, 886, 1018, 1036, 1562, 1725, 1794, 1826
BstMAI GTCTC 3 cut(s) 1061, 1331, 1708
BstMBI GATC 9 cut(s) 20, 523, 883, 1015, 1033, 1559, 1722, 1791, 1823
BstMCI CGRYCG 1 cut(s) 1158
BstMWI GCNNNNNNNGC 6 cut(s) 512, 784, 1139, 1241, 1286, 1885
BstNI CCWGG 5 cut(s) 58, 228, 579, 774, 1149
BstNSI RCATGY 2 cut(s) 204, 444
BstPAI GACNNNNGTC 1 cut(s) 1196
BstPI GGTNACC 1 cut(s) 1179
BstSCI CCNGG 5 cut(s) 56, 226, 577, 772, 1147
BstSFI CTRYAG 1 cut(s) 1338
BstV1I GCAGC 7 cut(s) 307, 1021, 1273, 1276, 1432, 1513, 1517
BstV2I GAAGAC 2 cut(s) 861, 1509
BstX2I RGATCY 3 cut(s) 20, 1033, 1823
BstXI CCANNNNNNTGG 2 cut(s) 1175, 1315
BstYI RGATCY 3 cut(s) 20, 1033, 1823
BstZ17I GTATAC 1 cut(s) 307
BsuI GTATCC 2 cut(s) 1220, 1693
BsuRI GGCC 4 cut(s) 56, 544, 564, 1167
BtgI CCRYGG 4 cut(s) 1062, 1119, 1364, 1626
BtgZI GCGATG 1 cut(s) 502
BtsCI GGATG 5 cut(s) 661, 971, 1168, 1324, 1680
BtsI GCAGTG 1 cut(s) 1816
BtsIMutI CAGTG 2 cut(s) 69, 1816
BveI ACCTGC 1 cut(s) 1124
Cac8I GCNNGC 6 cut(s) 7, 202, 674, 1169, 1435, 1528
Cfr10I RCCGGY 2 cut(s) 1398, 1526
Cfr13I GGNCC 2 cut(s) 563, 913
CseI GACGC 3 cut(s) 648, 776, 816
Csp6I GTAC 3 cut(s) 609, 810, 1091
CviQI GTAC 3 cut(s) 609, 810, 1091
DdeI CTNAG 5 cut(s) 324, 759, 779, 1374, 1815
DpnI GATC 9 cut(s) 22, 525, 885, 1017, 1035, 1561, 1724, 1793, 1825
DpnII GATC 9 cut(s) 20, 523, 883, 1015, 1033, 1559, 1722, 1791, 1823
DraI TTTAAA 1 cut(s) 1353
EaeI YGGCCR 1 cut(s) 1165
Eam1104I CTCTTC 3 cut(s) 339, 870, 1496
EarI CTCTTC 3 cut(s) 339, 870, 1496
Eco130I CCWWGG 4 cut(s) 1062, 1119, 1364, 1425
Eco147I AGGCCT 1 cut(s) 56
Eco24I GRGCYC 1 cut(s) 839
Eco31I GGTCTC 1 cut(s) 1331
Eco47I GGWCC 1 cut(s) 913
Eco57I CTGAAG 6 cut(s) 204, 363, 419, 446, 486, 870
Eco91I GGTNACC 1 cut(s) 1179
EcoO109I RGGNCCY 1 cut(s) 563
EcoO65I GGTNACC 1 cut(s) 1179
EcoRII CCWGG 5 cut(s) 56, 226, 577, 772, 1147
EcoT14I CCWWGG 4 cut(s) 1062, 1119, 1364, 1425
EcoT22I ATGCAT 1 cut(s) 494
EcoT38I GRGCYC 1 cut(s) 839
ErhI CCWWGG 4 cut(s) 1062, 1119, 1364, 1425
FalI AAGNNNNNCTT 4 cut(s) 387, 419, 1409, 1441
FaqI GGGAC 2 cut(s) 899, 1783
FauI CCCGC 1 cut(s) 575
FauNDI CATATG 1 cut(s) 754
FbaI TGATCA 1 cut(s) 1015
FblI GTMKAC 2 cut(s) 306, 937
Fnu4HI GCNGC 7 cut(s) 321, 1010, 1287, 1290, 1446, 1502, 1531
FokI GGATG 5 cut(s) 668, 958, 1175, 1331, 1687
FriOI GRGCYC 1 cut(s) 839
Fsp4HI GCNGC 7 cut(s) 321, 1010, 1287, 1290, 1446, 1502, 1531
FspBI CTAG 5 cut(s) 81, 503, 798, 807, 1752
GluI GCNGC 7 cut(s) 321, 1010, 1287, 1290, 1446, 1502, 1531
GsuI CTGGAG 1 cut(s) 1131
HaeIII GGCC 4 cut(s) 56, 544, 564, 1167
HapII CCGG 2 cut(s) 1399, 1527
HgaI GACGC 3 cut(s) 648, 776, 816
Hin1I GRCGYC 1 cut(s) 787
HincII GTYRAC 1 cut(s) 663
HindII GTYRAC 1 cut(s) 663
HindIII AAGCTT 5 cut(s) 670, 863, 1278, 1418, 1431
HinfI GANTC 7 cut(s) 380, 419, 497, 707, 803, 955, 1639
HpaII CCGG 2 cut(s) 1399, 1527
HphI GGTGA 4 cut(s) 286, 361, 1173, 1642
Hpy166II GTNNAC 4 cut(s) 307, 663, 938, 1091
Hpy188III TCNNGA 9 cut(s) 144, 1028, 1201, 1247, 1298, 1553, 1726, 1789, 1817
Hpy8I GTNNAC 4 cut(s) 307, 663, 938, 1091
Hpy99I CGWCG 1 cut(s) 1847
HpyAV CCTTC 6 cut(s) 182, 350, 421, 1194, 1645, 1690
HpyCH4III ACNGT 2 cut(s) 1467, 1630
HpyCH4IV ACGT 2 cut(s) 1096, 1767
HpyF10VI GCNNNNNNNGC 6 cut(s) 512, 784, 1139, 1241, 1286, 1885
HpyF3I CTNAG 5 cut(s) 324, 759, 779, 1374, 1815
HpySE526I ACGT 2 cut(s) 1096, 1767
Hsp92I GRCGYC 1 cut(s) 787
KroI GCCGGC 1 cut(s) 1526
KroNI GCCGGC 1 cut(s) 1528
Ksp22I TGATCA 1 cut(s) 1015
Kzo9I GATC 9 cut(s) 20, 523, 883, 1015, 1033, 1559, 1722, 1791, 1823
LmnI GCTCC 5 cut(s) 553, 614, 842, 1249, 1269
Lsp1109I GCAGC 7 cut(s) 307, 1021, 1273, 1276, 1432, 1513, 1517
LweI GCATC 9 cut(s) 22, 188, 479, 524, 646, 987, 1032, 1151, 1665
MaeI CTAG 5 cut(s) 81, 503, 798, 807, 1752
MaeII ACGT 2 cut(s) 1096, 1767
MaeIII GTNAC 4 cut(s) 498, 1179, 1198, 1356
MalI GATC 9 cut(s) 22, 525, 885, 1017, 1035, 1561, 1724, 1793, 1825
MboI GATC 9 cut(s) 20, 523, 883, 1015, 1033, 1559, 1722, 1791, 1823
MfeI CAATTG 1 cut(s) 1521
MflI RGATCY 3 cut(s) 20, 1033, 1823
MhlI GDGCHC 3 cut(s) 330, 839, 1816
MlsI TGGCCA 1 cut(s) 1167
MluCI AATT 9 cut(s) 14, 248, 361, 409, 923, 985, 1255, 1521, 1865
MluNI TGGCCA 1 cut(s) 1167
MlyI GAGTC 3 cut(s) 389, 506, 812
MmeI TCCRAC 3 cut(s) 82, 1636, 1731
Mox20I TGGCCA 1 cut(s) 1167
Mph1103I ATGCAT 1 cut(s) 494
MroNI GCCGGC 1 cut(s) 1526
MscI TGGCCA 1 cut(s) 1167
MslI CAYNNNNRTG 2 cut(s) 1317, 1363
Msp20I TGGCCA 1 cut(s) 1167
MspA1I CMGCKG 1 cut(s) 1171
MspCI CTTAAG 1 cut(s) 667
MspI CCGG 2 cut(s) 1399, 1527
MspR9I CCNGG 5 cut(s) 58, 228, 579, 774, 1149
MunI CAATTG 1 cut(s) 1521
MvaI CCWGG 5 cut(s) 58, 228, 579, 774, 1149
MwoI GCNNNNNNNGC 6 cut(s) 512, 784, 1139, 1241, 1286, 1885
NaeI GCCGGC 1 cut(s) 1528
NcoI CCATGG 3 cut(s) 1062, 1119, 1364
NdeI CATATG 1 cut(s) 754
NdeII GATC 9 cut(s) 20, 523, 883, 1015, 1033, 1559, 1722, 1791, 1823
NgoMIV GCCGGC 1 cut(s) 1526
NlaIV GGNNCC 4 cut(s) 565, 838, 915, 1825
NmuCI GTSAC 4 cut(s) 498, 1179, 1198, 1356
NsiI ATGCAT 1 cut(s) 494
NspI RCATGY 2 cut(s) 204, 444
NspV TTCGAA 2 cut(s) 246, 406
PaeI GCATGC 1 cut(s) 204
PaqCI CACCTGC 1 cut(s) 1124
PceI AGGCCT 1 cut(s) 56
PciI ACATGT 1 cut(s) 440
PdiI GCCGGC 1 cut(s) 1528
PfeI GAWTC 4 cut(s) 419, 707, 955, 1639
PkrI GCNGC 7 cut(s) 322, 1011, 1288, 1291, 1447, 1503, 1532
PleI GAGTC 3 cut(s) 388, 505, 811
PpsI GAGTC 3 cut(s) 388, 505, 811
PscI ACATGT 1 cut(s) 440
PshAI GACNNNNGTC 1 cut(s) 1196
Psp6I CCWGG 5 cut(s) 56, 226, 577, 772, 1147
PspEI GGTNACC 1 cut(s) 1179
PspGI CCWGG 5 cut(s) 56, 226, 577, 772, 1147
PspN4I GGNNCC 4 cut(s) 565, 838, 915, 1825
PspPI GGNCC 2 cut(s) 563, 913
PsuI RGATCY 3 cut(s) 20, 1033, 1823
PvuII CAGCTG 1 cut(s) 1171
RsaI GTAC 3 cut(s) 610, 811, 1092
RsaNI GTAC 3 cut(s) 609, 810, 1091
RseI CAYNNNNRTG 2 cut(s) 1317, 1363
SatI GCNGC 7 cut(s) 321, 1010, 1287, 1290, 1446, 1502, 1531
Sau3AI GATC 9 cut(s) 20, 523, 883, 1015, 1033, 1559, 1722, 1791, 1823
Sau96I GGNCC 2 cut(s) 563, 913
SchI GAGTC 3 cut(s) 389, 506, 812
ScrFI CCNGG 5 cut(s) 58, 228, 579, 774, 1149
SduI GDGCHC 3 cut(s) 330, 839, 1816
SfaNI GCATC 9 cut(s) 22, 188, 479, 524, 646, 987, 1032, 1151, 1665
SfcI CTRYAG 1 cut(s) 1338
SfuI TTCGAA 2 cut(s) 246, 406
SinI GGWCC 1 cut(s) 913
SmiMI CAYNNNNRTG 2 cut(s) 1317, 1363
SmlI CTYRAG 3 cut(s) 142, 667, 1691
SmoI CTYRAG 3 cut(s) 142, 667, 1691
SpeI ACTAGT 1 cut(s) 797
SphI GCATGC 1 cut(s) 204
Sse9I AATT 9 cut(s) 14, 248, 361, 409, 923, 985, 1255, 1521, 1865
SseBI AGGCCT 1 cut(s) 56
SsiI CCGC 1 cut(s) 582
SspMI CTAG 5 cut(s) 81, 503, 798, 807, 1752
StuI AGGCCT 1 cut(s) 56
StyD4I CCNGG 5 cut(s) 56, 226, 577, 772, 1147
StyI CCWWGG 4 cut(s) 1062, 1119, 1364, 1425
TaaI ACNGT 2 cut(s) 1467, 1630
TaiI ACGT 2 cut(s) 1099, 1770
TaqI TCGA 9 cut(s) 246, 406, 961, 1083, 1158, 1333, 1725, 1772, 1842
TaqII GACCGA 2 cut(s) 1144, 1503
TasI AATT 9 cut(s) 14, 248, 361, 409, 923, 985, 1255, 1521, 1865
TatI WGTACW 2 cut(s) 608, 1090
TfiI GAWTC 4 cut(s) 419, 707, 955, 1639
TscAI CASTG 2 cut(s) 76, 1816
TseFI GTSAC 4 cut(s) 498, 1179, 1198, 1356
TseI GCWGC 7 cut(s) 320, 1009, 1286, 1289, 1445, 1501, 1530
Tsp45I GTSAC 4 cut(s) 498, 1179, 1198, 1356
TspDTI ATGAA 6 cut(s) 26, 113, 210, 741, 1176, 1866
TspGWI ACGGA 3 cut(s) 688, 1816, 1860
TspRI CASTG 2 cut(s) 76, 1816
Vha464I CTTAAG 1 cut(s) 667
VpaK11BI GGWCC 1 cut(s) 913
XapI RAATTY 2 cut(s) 923, 985
XceI RCATGY 2 cut(s) 204, 444
XmiI GTMKAC 2 cut(s) 306, 937
XspI CTAG 5 cut(s) 81, 503, 798, 807, 1752
Zsp2I ATGCAT 1 cut(s) 494
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.