Prupe.4G196900_v2.0.a1

WD repeat-containing protein

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp04
Physical Location & Seq
Forward (+)
12016983 .. 12021698
4716 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.4G196900.3

Sequence Viewer

Length: 1329 bp
ATGGATCTTCTCTGCAACGCATACTCAAACGCCTCAGACAACGAAGAAGAGGAAGAAGAATCGGCTAAACAACCCAGACCCGAAAACTTCACGCCCCCGAATTCGAAGCGGCTCAAACCCGTTAACCCATTTACACATACTAAAACTCAGAATCCTCTGTCGGGCTCAACCCAGTTCCCGGCCCGCCATATAGAAGCTCCGGTTCCTGGTAGATACGTATCCAAGAGAGAGCGCTCTCTCTTGGGTTCCCAACCTACCGCCTCCGACCCGAACCCGGATGCTTTGCTGCTGACAACCTCTCCTGTTTTTGGGAGTATTTCGGATTCTGATGTTCCTCGTGATATTAAGTCATTGTTGAGAAACAAAGCAAAAAAGGGTCGTGCACAGCTTGGCCAGATGCCTCAAAGAATGTCTGTGCCTCTAAGCAGACATACCAAAGCTGTTAATGCTGTACATTGGTCACCAACTCATGCTCATCTTCTTGCATCTGCTTCGATGGATCAAACAATCTGCATATGGAATGTGTGGAGCAGTGATCAGAAGGTAGCCCGTGTTTTGAATTTTCACAATGCTGCTATCAAAGATGTGAAATGGTCGGGGCAAGGGTTGTTTGTGCTTTCTTGTGGATATGACTCCTCATCAAAGCTAGTGGATGTTGAAAGGGGGATAGAGACTCAGGTTTATAAGGAGGATCAAGTTGTTAGTGTTGTTAAATTCCATCCTGATAATTTCAACCTCTTCGTTTCTGGGGGGTCCAAAGGCGGTCTGAGGTTGTGGGATGTTAGAAATGGCAAGGTGGTCCATGAATACGTTCGAGGTCACGATCCCATCCTTGATGTTGAATTCACCACGAATGGCAAGCAGATTATATCGTCTAGTGATGTATCTGGACGCAACCTTAGTGAAAATTCTATTGTTGTTTGGGATGTTTCACGACAAGTTCCACTCTCTAATCAGGTTTATGTGGAAGCCTACACATGTCCCTGTGTGAGATGCCACACATTTGAACCATTTTTCGTTGCCCAGTCAAATGGTAATTATATTGCAATCTTCTCTTCAATCCCCCCCTTCAAGCTGAACAAGTACAAGAGGTATGAAAGCCATGGGGTATCAGGATTTCCCATTAAATGCGTGTTTAGCGTGGATGGGGAAAAGCTAATCTCGGGCTCCTCTGATGGGTCTATATACTTCTACGACTATAGGTCTTCTGAGCTTGTCAGAAAAATCAAGGCATATGAGCAGGCTTGCATTGACATTGCTATCCACCCCAGCATACCTAATGTGATTGCTTCATGCAGTTGGAATGGAGAGGTTTCAGTGTTCGAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

443

Amino Acids

49.16

Weight (kDa)

8.0

Isoelectric Point (pI)

43.67

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 684
AciI CCGC 4 cut(s) 109, 184, 258, 762
AclWI GGATC 4 cut(s) 12, 507, 699, 818
AcoI YGGCCR 1 cut(s) 391
AcsI RAATTY 5 cut(s) 100, 559, 713, 842, 907
AfaI GTAC 2 cut(s) 453, 1085
AfeI AGCGCT 1 cut(s) 233
AfiI CCNNNNNNNGG 6 cut(s) 161, 178, 206, 274, 308, 1176
AflIII ACRYGT 1 cut(s) 977
AgsI TTSAA 7 cut(s) 559, 659, 733, 842, 1007, 1059, 1072
AhdI GACNNNNNGTC 1 cut(s) 1201
AjnI CCWGG 1 cut(s) 205
AluBI AGCT 7 cut(s) 197, 388, 440, 646, 1075, 1156, 1213
AluI AGCT 7 cut(s) 197, 388, 440, 646, 1075, 1156, 1213
Alw21I GWGCWC 1 cut(s) 385
Alw26I GTCTC 1 cut(s) 665
Alw44I GTGCAC 1 cut(s) 381
AlwI GGATC 4 cut(s) 12, 507, 699, 818
Ama87I CYCGRG 1 cut(s) 1162
Aor51HI AGCGCT 1 cut(s) 233
AoxI GGCC 2 cut(s) 180, 391
ApaLI GTGCAC 1 cut(s) 381
ApeKI GCWGC 2 cut(s) 286, 572
ApoI RAATTY 5 cut(s) 100, 559, 713, 842, 907
Asp700I GAANNNNTTC 1 cut(s) 810
AspLEI GCGC 1 cut(s) 234
AspS9I GGNCC 3 cut(s) 181, 753, 799
AsuC2I CCSGG 2 cut(s) 179, 275
AsuHPI GGTGA 2 cut(s) 453, 838
AsuII TTCGAA 1 cut(s) 104
AvaI CYCGRG 1 cut(s) 1162
AvaII GGWCC 2 cut(s) 753, 799
BaeGI GKGCMC 1 cut(s) 385
BalI TGGCCA 1 cut(s) 393
BanII GRGCYC 2 cut(s) 167, 1169
BauI CACGAG 1 cut(s) 336
BbsI GAAGAC 1 cut(s) 1197
Bbv12I GWGCWC 1 cut(s) 385
BbvI GCAGC 2 cut(s) 273, 559
BccI CCATC 5 cut(s) 490, 726, 836, 1139, 1169
BcgI CGANNNNNNTGC 2 cut(s) 474, 508
BciT130I CCWGG 1 cut(s) 207
BciVI GTATCC 1 cut(s) 229
BclI TGATCA 1 cut(s) 535
BcnI CCSGG 2 cut(s) 179, 275
BcoDI GTCTC 1 cut(s) 665
BfaI CTAG 2 cut(s) 647, 876
BfmI CTRYAG 1 cut(s) 1198
BfoI RGCGCY 1 cut(s) 235
BfuI GTATCC 1 cut(s) 229
BisI GCNGC 3 cut(s) 110, 287, 573
BlsI GCNGC 3 cut(s) 111, 288, 574
Bme1390I CCNGG 3 cut(s) 179, 207, 275
Bme18I GGWCC 2 cut(s) 753, 799
BmeRI GACNNNNNGTC 1 cut(s) 1201
BmeT110I CYCGRG 1 cut(s) 1162
BmgT120I GGNCC 3 cut(s) 181, 753, 799
BmiI GGNNCC 4 cut(s) 204, 247, 754, 1168
BmrFI CCNGG 3 cut(s) 179, 207, 275
BmrI ACTGGG 2 cut(s) 166, 1018
BmsI GCATC 4 cut(s) 268, 387, 494, 983
BmuI ACTGGG 2 cut(s) 166, 1018
BpiI GAAGAC 1 cut(s) 1197
Bpu14I TTCGAA 1 cut(s) 104
BpuMI CCSGG 2 cut(s) 179, 275
BsaAI YACGTR 1 cut(s) 217
BsaBI GATNNNNATC 1 cut(s) 217
BsaJI CCNNGG 1 cut(s) 1102
BsaWI WCCGGW 1 cut(s) 199
BsaXI ACNNNNNCTCC 2 cut(s) 283, 313
Bsc4I CCNNNNNNNGG 6 cut(s) 161, 178, 206, 274, 308, 1176
Bse1I ACTGG 2 cut(s) 172, 1024
Bse3DI GCAATG 1 cut(s) 1254
Bse8I GATNNNNATC 1 cut(s) 217
BseBI CCWGG 1 cut(s) 207
BseDI CCNNGG 1 cut(s) 1102
BseGI GGATG 7 cut(s) 283, 658, 718, 784, 828, 931, 1150
BseJI GATNNNNATC 1 cut(s) 217
BseLI CCNNNNNNNGG 6 cut(s) 161, 178, 206, 274, 308, 1176
BseMI GCAATG 1 cut(s) 1254
BseMII CTCAG 5 cut(s) 48, 161, 689, 758, 1200
BseNI ACTGG 2 cut(s) 172, 1024
BseRI GAGGAG 2 cut(s) 625, 1159
BseSI GKGCMC 1 cut(s) 385
BseXI GCAGC 2 cut(s) 273, 559
BseYI CCCAGC 1 cut(s) 1268
BshFI GGCC 2 cut(s) 182, 393
BsiHKAI GWGCWC 1 cut(s) 385
BsiHKCI CYCGRG 1 cut(s) 1162
BsiSI CCGG 3 cut(s) 179, 200, 275
BslFI GGGAC 1 cut(s) 966
BslI CCNNNNNNNGG 6 cut(s) 161, 178, 206, 274, 308, 1176
BsmAI GTCTC 1 cut(s) 665
BsmFI GGGAC 1 cut(s) 966
BsnI GGCC 2 cut(s) 182, 393
BsoBI CYCGRG 1 cut(s) 1162
Bsp119I TTCGAA 1 cut(s) 104
Bsp1286I GDGCHC 3 cut(s) 167, 385, 1169
Bsp1407I TGTACA 1 cut(s) 451
Bsp143I GATC 5 cut(s) 4, 499, 535, 691, 823
Bsp19I CCATGG 1 cut(s) 1102
BspACI CCGC 4 cut(s) 109, 184, 258, 762
BspANI GGCC 2 cut(s) 182, 393
BspCNI CTCAG 5 cut(s) 47, 160, 688, 759, 1201
BspLI GGNNCC 4 cut(s) 204, 247, 754, 1168
BspPI GGATC 4 cut(s) 12, 507, 699, 818
BspT104I TTCGAA 1 cut(s) 104
BsrDI GCAATG 1 cut(s) 1254
BsrGI TGTACA 1 cut(s) 451
BsrI ACTGG 2 cut(s) 172, 1024
BssECI CCNNGG 1 cut(s) 1102
BssMI GATC 5 cut(s) 4, 499, 535, 691, 823
BssSI CACGAG 1 cut(s) 336
BssT1I CCWWGG 1 cut(s) 1102
Bst2BI CACGAG 1 cut(s) 336
Bst2UI CCWGG 1 cut(s) 207
Bst6I CTCTTC 3 cut(s) 42, 743, 1060
BstAUI TGTACA 1 cut(s) 451
BstBAI YACGTR 1 cut(s) 217
BstBI TTCGAA 1 cut(s) 104
BstC8I GCNNGC 4 cut(s) 184, 860, 1242, 1246
BstDEI CTNAG 7 cut(s) 34, 147, 422, 675, 767, 899, 1209
BstDSI CCRYGG 1 cut(s) 1102
BstEII GGTNACC 1 cut(s) 459
BstF5I GGATG 7 cut(s) 283, 658, 718, 784, 828, 931, 1150
BstH2I RGCGCY 1 cut(s) 235
BstHHI GCGC 1 cut(s) 234
BstKTI GATC 5 cut(s) 7, 502, 538, 694, 826
BstMAI GTCTC 1 cut(s) 665
BstMBI GATC 5 cut(s) 4, 499, 535, 691, 823
BstMWI GCNNNNNNNGC 2 cut(s) 446, 1137
BstNI CCWGG 1 cut(s) 207
BstNSI RCATGY 1 cut(s) 981
BstPI GGTNACC 1 cut(s) 459
BstSCI CCNGG 3 cut(s) 177, 205, 273
BstSFI CTRYAG 1 cut(s) 1198
BstSLI GKGCMC 1 cut(s) 385
BstSNI TACGTA 1 cut(s) 217
BstV1I GCAGC 2 cut(s) 273, 559
BstV2I GAAGAC 1 cut(s) 1197
BstX2I RGATCY 1 cut(s) 4
BstXI CCANNNNNNTGG 1 cut(s) 1031
BstYI RGATCY 1 cut(s) 4
BsuI GTATCC 1 cut(s) 229
BsuRI GGCC 2 cut(s) 182, 393
BtgI CCRYGG 1 cut(s) 1102
BtsCI GGATG 7 cut(s) 283, 658, 718, 784, 828, 931, 1150
BtsI GCAGTG 1 cut(s) 538
BtsIMutI CAGTG 2 cut(s) 538, 1323
Cac8I GCNNGC 4 cut(s) 184, 860, 1242, 1246
CfoI GCGC 1 cut(s) 234
Cfr13I GGNCC 3 cut(s) 181, 753, 799
CseI GACGC 1 cut(s) 900
Csp6I GTAC 2 cut(s) 452, 1084
CspCI CAANNNNNGTGG 2 cut(s) 630, 665
CviAII CATG 5 cut(s) 470, 803, 978, 1103, 1293
CviQI GTAC 2 cut(s) 452, 1084
DdeI CTNAG 7 cut(s) 34, 147, 422, 675, 767, 899, 1209
DpnI GATC 5 cut(s) 6, 501, 537, 693, 825
DpnII GATC 5 cut(s) 4, 499, 535, 691, 823
DriI GACNNNNNGTC 1 cut(s) 1201
EaeI YGGCCR 1 cut(s) 391
Eam1104I CTCTTC 3 cut(s) 42, 743, 1060
Eam1105I GACNNNNNGTC 1 cut(s) 1201
EarI CTCTTC 3 cut(s) 42, 743, 1060
Eco105I TACGTA 1 cut(s) 217
Eco130I CCWWGG 1 cut(s) 1102
Eco24I GRGCYC 2 cut(s) 167, 1169
Eco47I GGWCC 2 cut(s) 753, 799
Eco47III AGCGCT 1 cut(s) 233
Eco88I CYCGRG 1 cut(s) 1162
Eco91I GGTNACC 1 cut(s) 459
EcoO65I GGTNACC 1 cut(s) 459
EcoRI GAATTC 2 cut(s) 100, 842
EcoRII CCWGG 1 cut(s) 205
EcoT14I CCWWGG 1 cut(s) 1102
EcoT38I GRGCYC 2 cut(s) 167, 1169
ErhI CCWWGG 1 cut(s) 1102
FaeI CATG 5 cut(s) 473, 806, 981, 1106, 1296
FaqI GGGAC 1 cut(s) 966
FatI CATG 5 cut(s) 469, 802, 977, 1102, 1292
FauI CCCGC 1 cut(s) 191
FauNDI CATATG 2 cut(s) 515, 1234
FbaI TGATCA 1 cut(s) 535
Fnu4HI GCNGC 3 cut(s) 110, 287, 573
FokI GGATG 7 cut(s) 290, 665, 705, 791, 815, 938, 1157
FriOI GRGCYC 2 cut(s) 167, 1169
Fsp4HI GCNGC 3 cut(s) 110, 287, 573
FspBI CTAG 2 cut(s) 647, 876
GlaI GCGC 1 cut(s) 233
GluI GCNGC 3 cut(s) 110, 287, 573
GsaI CCCAGC 1 cut(s) 1272
HaeII RGCGCY 1 cut(s) 235
HaeIII GGCC 2 cut(s) 182, 393
HapII CCGG 3 cut(s) 179, 200, 275
HgaI GACGC 1 cut(s) 900
HhaI GCGC 1 cut(s) 234
Hin1II CATG 5 cut(s) 473, 806, 981, 1106, 1296
Hin6I GCGC 1 cut(s) 232
HinP1I GCGC 1 cut(s) 232
HincII GTYRAC 1 cut(s) 124
HindII GTYRAC 1 cut(s) 124
HinfI GANTC 5 cut(s) 59, 151, 323, 632, 673
HpaI GTTAAC 1 cut(s) 124
HpaII CCGG 3 cut(s) 179, 200, 275
HphI GGTGA 2 cut(s) 453, 838
Hpy166II GTNNAC 2 cut(s) 124, 383
Hpy188III TCNNGA 6 cut(s) 338, 722, 821, 888, 933, 1113
Hpy8I GTNNAC 2 cut(s) 124, 383
HpyAV CCTTC 2 cut(s) 535, 1078
HpyCH4IV ACGT 2 cut(s) 216, 810
HpyCH4V TGCA 7 cut(s) 15, 383, 485, 513, 1046, 1248, 1296
HpyF10VI GCNNNNNNNGC 2 cut(s) 446, 1137
HpyF3I CTNAG 7 cut(s) 34, 147, 422, 675, 767, 899, 1209
HpySE526I ACGT 2 cut(s) 216, 810
Hsp92II CATG 5 cut(s) 473, 806, 981, 1106, 1296
HspAI GCGC 1 cut(s) 232
Ksp22I TGATCA 1 cut(s) 535
KspAI GTTAAC 1 cut(s) 124
Kzo9I GATC 5 cut(s) 4, 499, 535, 691, 823
LmnI GCTCC 3 cut(s) 202, 528, 1172
Lsp1109I GCAGC 2 cut(s) 273, 559
LweI GCATC 4 cut(s) 268, 387, 494, 983
MaeI CTAG 2 cut(s) 647, 876
MaeII ACGT 2 cut(s) 216, 810
MaeIII GTNAC 2 cut(s) 459, 818
MalI GATC 5 cut(s) 6, 501, 537, 693, 825
MboI GATC 5 cut(s) 4, 499, 535, 691, 823
MboII GAAGA 9 cut(s) 56, 59, 65, 68, 470, 730, 1042, 1047, 1197
MflI RGATCY 1 cut(s) 4
MhlI GDGCHC 3 cut(s) 167, 385, 1169
MlsI TGGCCA 1 cut(s) 393
MluCI AATT 7 cut(s) 100, 559, 713, 727, 842, 907, 1036
MluNI TGGCCA 1 cut(s) 393
MlyI GAGTC 2 cut(s) 626, 667
MmeI TCCRAC 2 cut(s) 288, 1280
Mox20I TGGCCA 1 cut(s) 393
MroXI GAANNNNTTC 1 cut(s) 810
MscI TGGCCA 1 cut(s) 393
MseI TTAA 5 cut(s) 123, 345, 444, 711, 1125
Msp20I TGGCCA 1 cut(s) 393
MspI CCGG 3 cut(s) 179, 200, 275
MspR9I CCNGG 3 cut(s) 179, 207, 275
MvaI CCWGG 1 cut(s) 207
MwoI GCNNNNNNNGC 2 cut(s) 446, 1137
NciI CCSGG 2 cut(s) 179, 275
NcoI CCATGG 1 cut(s) 1102
NdeI CATATG 2 cut(s) 515, 1234
NdeII GATC 5 cut(s) 4, 499, 535, 691, 823
NlaIII CATG 5 cut(s) 473, 806, 981, 1106, 1296
NlaIV GGNNCC 4 cut(s) 204, 247, 754, 1168
NmuCI GTSAC 2 cut(s) 459, 818
NspI RCATGY 1 cut(s) 981
NspV TTCGAA 1 cut(s) 104
PciI ACATGT 1 cut(s) 977
PdmI GAANNNNTTC 1 cut(s) 810
PfeI GAWTC 3 cut(s) 59, 151, 323
PkrI GCNGC 3 cut(s) 111, 288, 574
PleI GAGTC 2 cut(s) 626, 667
PpsI GAGTC 2 cut(s) 626, 667
Ppu21I YACGTR 1 cut(s) 217
PscI ACATGT 1 cut(s) 977
PsiI TTATAA 1 cut(s) 684
Psp6I CCWGG 1 cut(s) 205
PspEI GGTNACC 1 cut(s) 459
PspFI CCCAGC 1 cut(s) 1268
PspGI CCWGG 1 cut(s) 205
PspN4I GGNNCC 4 cut(s) 204, 247, 754, 1168
PspPI GGNCC 3 cut(s) 181, 753, 799
PsuI RGATCY 1 cut(s) 4
RsaI GTAC 2 cut(s) 453, 1085
RsaNI GTAC 2 cut(s) 452, 1084
SaqAI TTAA 5 cut(s) 123, 345, 444, 711, 1125
SatI GCNGC 3 cut(s) 110, 287, 573
Sau3AI GATC 5 cut(s) 4, 499, 535, 691, 823
Sau96I GGNCC 3 cut(s) 181, 753, 799
SchI GAGTC 2 cut(s) 626, 667
ScrFI CCNGG 3 cut(s) 179, 207, 275
SduI GDGCHC 3 cut(s) 167, 385, 1169
SfaNI GCATC 4 cut(s) 268, 387, 494, 983
SfcI CTRYAG 1 cut(s) 1198
SfuI TTCGAA 1 cut(s) 104
SinI GGWCC 2 cut(s) 753, 799
SnaBI TACGTA 1 cut(s) 217
Sse9I AATT 7 cut(s) 100, 559, 713, 727, 842, 907, 1036
SsiI CCGC 4 cut(s) 109, 184, 258, 762
SspMI CTAG 2 cut(s) 647, 876
StyD4I CCNGG 3 cut(s) 177, 205, 273
StyI CCWWGG 1 cut(s) 1102
TaiI ACGT 2 cut(s) 219, 813
TaqI TCGA 4 cut(s) 104, 494, 814, 1323
TasI AATT 7 cut(s) 100, 559, 713, 727, 842, 907, 1036
TatI WGTACW 2 cut(s) 451, 1083
TauI GCSGC 1 cut(s) 112
TfiI GAWTC 3 cut(s) 59, 151, 323
Tru1I TTAA 5 cut(s) 123, 345, 444, 711, 1125
Tru9I TTAA 5 cut(s) 123, 345, 444, 711, 1125
TscAI CASTG 2 cut(s) 538, 1323
TseFI GTSAC 2 cut(s) 459, 818
TseI GCWGC 2 cut(s) 286, 572
Tsp45I GTSAC 2 cut(s) 459, 818
TspDTI ATGAA 3 cut(s) 819, 1110, 1281
TspRI CASTG 2 cut(s) 538, 1323
VneI GTGCAC 1 cut(s) 381
VpaK11BI GGWCC 2 cut(s) 753, 799
XapI RAATTY 5 cut(s) 100, 559, 713, 842, 907
XceI RCATGY 1 cut(s) 981
XmnI GAANNNNTTC 1 cut(s) 810
XspI CTAG 2 cut(s) 647, 876
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.