Rorug05G0158500

WD repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0008102
Physical Location & Seq
Forward (+)
14734497 .. 14734901
405 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0158500.1

Sequence Viewer

Length: 405 bp
ATGAAAAACATTAAGCTATATGTGAGGAGGGTGTTTATTATGGACAACTGCGAGGAGCTCATTCCGGAGTATCTTGGATTTGTCAAGGGTGTTGCGGACTCCGATGACTTGCCACTCAACATTTCTCGTGAGATGCTTCAACAGAACAAGATCCTGAAGGTGATCAGGAAGAACCTTATGAAGAAGTGCATTGAGATGTTCAATGGGATTGCTGAGAACAAAGAGGATTACGCCAAGTTTTATGAGGCATTTTCAAAGAACTTGAAGTTGGGGATTCATGAGGACAGCCAGAACAGGTCCAAGTTGGCTGACCTTCTCCGATACCACTCCACCAACAGCGGTGACGATCTCACAAGCTTGAAGGACTATGTAACCAGAATGGAGGGCCAGAAGGACATCTACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
WD40

Protein Analysis

134

Amino Acids

15.71

Weight (kDa)

7.71

Isoelectric Point (pI)

43.91

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
HSP90 PF00183 2 - 134 6.6e-72 Hsp90 protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 64
AciI CCGC 2 cut(s) 95, 339
AclWI GGATC 1 cut(s) 145
AcuI CTGAAG 1 cut(s) 176
AgsI TTSAA 5 cut(s) 140, 202, 255, 265, 361
AjuI GAANNNNNNNTTGG 2 cut(s) 251, 283
AluBI AGCT 3 cut(s) 16, 58, 357
AluI AGCT 3 cut(s) 16, 58, 357
Alw21I GWGCWC 1 cut(s) 60
AlwI GGATC 1 cut(s) 145
Aor13HI TCCGGA 1 cut(s) 64
AoxI GGCC 1 cut(s) 385
AspS9I GGNCC 2 cut(s) 297, 385
AsuHPI GGTGA 2 cut(s) 172, 353
AvaII GGWCC 1 cut(s) 297
BanII GRGCYC 1 cut(s) 60
BarI GAAGNNNNNNTAC 1 cut(s) 383
BauI CACGAG 1 cut(s) 126
Bbv12I GWGCWC 1 cut(s) 60
BclI TGATCA 1 cut(s) 162
Bme18I GGWCC 1 cut(s) 297
BmgT120I GGNCC 2 cut(s) 297, 385
BmsI GCATC 1 cut(s) 123
BsaWI WCCGGW 1 cut(s) 64
BseAI TCCGGA 1 cut(s) 64
BseMII CTCAG 1 cut(s) 204
BseRI GAGGAG 2 cut(s) 40, 68
BshFI GGCC 1 cut(s) 387
BsiHKAI GWGCWC 1 cut(s) 60
BsiSI CCGG 1 cut(s) 65
BsnI GGCC 1 cut(s) 387
Bsp1286I GDGCHC 1 cut(s) 60
Bsp13I TCCGGA 1 cut(s) 64
Bsp143I GATC 3 cut(s) 150, 162, 346
BspACI CCGC 2 cut(s) 95, 339
BspANI GGCC 1 cut(s) 387
BspCNI CTCAG 1 cut(s) 205
BspEI TCCGGA 1 cut(s) 64
BspHI TCATGA 1 cut(s) 277
BspPI GGATC 1 cut(s) 145
BssMI GATC 3 cut(s) 150, 162, 346
BssSI CACGAG 1 cut(s) 126
Bst2BI CACGAG 1 cut(s) 126
BstDEI CTNAG 1 cut(s) 213
BstKTI GATC 3 cut(s) 153, 165, 349
BstMBI GATC 3 cut(s) 150, 162, 346
BstX2I RGATCY 1 cut(s) 150
BstYI RGATCY 1 cut(s) 150
BsuRI GGCC 1 cut(s) 387
CciI TCATGA 1 cut(s) 277
Cfr13I GGNCC 2 cut(s) 297, 385
CviAII CATG 1 cut(s) 278
CviJI RGCY 6 cut(s) 16, 58, 288, 308, 357, 387
CviKI_1 RGCY 6 cut(s) 16, 58, 288, 308, 357, 387
DdeI CTNAG 1 cut(s) 213
DpnI GATC 3 cut(s) 152, 164, 348
DpnII GATC 3 cut(s) 150, 162, 346
Ecl136II GAGCTC 1 cut(s) 58
Eco24I GRGCYC 1 cut(s) 60
Eco47I GGWCC 1 cut(s) 297
Eco53kI GAGCTC 1 cut(s) 58
Eco57I CTGAAG 1 cut(s) 176
EcoICRI GAGCTC 1 cut(s) 58
EcoT38I GRGCYC 1 cut(s) 60
FaeI CATG 1 cut(s) 281
FaiI YATR 7 cut(s) 19, 21, 41, 179, 243, 279, 369
FatI CATG 1 cut(s) 277
FbaI TGATCA 1 cut(s) 162
FriOI GRGCYC 1 cut(s) 60
HaeIII GGCC 1 cut(s) 387
HapII CCGG 1 cut(s) 65
Hin1II CATG 1 cut(s) 281
HindIII AAGCTT 1 cut(s) 355
HinfI GANTC 2 cut(s) 98, 274
HpaII CCGG 1 cut(s) 65
HphI GGTGA 2 cut(s) 172, 353
Hpy188I TCNGA 2 cut(s) 103, 320
Hpy188III TCNNGA 5 cut(s) 65, 128, 154, 166, 278
HpyAV CCTTC 4 cut(s) 151, 323, 355, 385
HpyCH4V TGCA 1 cut(s) 189
HpyF3I CTNAG 1 cut(s) 213
Hsp92II CATG 1 cut(s) 281
Kpn2I TCCGGA 1 cut(s) 64
Ksp22I TGATCA 1 cut(s) 162
Kzo9I GATC 3 cut(s) 150, 162, 346
LmnI GCTCC 1 cut(s) 55
LpnPI CCDG 7 cut(s) 78, 151, 167, 280, 302, 388, 401
LweI GCATC 1 cut(s) 123
MaeIII GTNAC 2 cut(s) 341, 370
MalI GATC 3 cut(s) 152, 164, 348
MboI GATC 3 cut(s) 150, 162, 346
MboII GAAGA 2 cut(s) 181, 193
MflI RGATCY 1 cut(s) 150
MhlI GDGCHC 1 cut(s) 60
MlyI GAGTC 1 cut(s) 92
MnlI CCTC 7 cut(s) 18, 21, 46, 217, 238, 274, 376
MroI TCCGGA 1 cut(s) 64
MseI TTAA 1 cut(s) 12
MslI CAYNNNNRTG 1 cut(s) 194
MspA1I CMGCKG 1 cut(s) 339
MspI CCGG 1 cut(s) 65
NdeII GATC 3 cut(s) 150, 162, 346
NlaIII CATG 1 cut(s) 281
NmuCI GTSAC 1 cut(s) 341
PagI TCATGA 1 cut(s) 277
PfeI GAWTC 1 cut(s) 274
PleI GAGTC 1 cut(s) 92
PpsI GAGTC 1 cut(s) 92
Psp124BI GAGCTC 1 cut(s) 60
PspPI GGNCC 2 cut(s) 297, 385
PsuI RGATCY 1 cut(s) 150
RseI CAYNNNNRTG 1 cut(s) 194
SacI GAGCTC 1 cut(s) 60
SaqAI TTAA 1 cut(s) 12
Sau3AI GATC 3 cut(s) 150, 162, 346
Sau96I GGNCC 2 cut(s) 297, 385
SchI GAGTC 1 cut(s) 92
SduI GDGCHC 1 cut(s) 60
SetI ASST 7 cut(s) 18, 60, 162, 177, 299, 315, 359
SfaNI GCATC 1 cut(s) 123
SinI GGWCC 1 cut(s) 297
SmiMI CAYNNNNRTG 1 cut(s) 194
SsiI CCGC 2 cut(s) 95, 339
SstI GAGCTC 1 cut(s) 60
TfiI GAWTC 1 cut(s) 274
Tru1I TTAA 1 cut(s) 12
Tru9I TTAA 1 cut(s) 12
TseFI GTSAC 1 cut(s) 341
Tsp45I GTSAC 1 cut(s) 341
TspDTI ATGAA 3 cut(s) 17, 194, 266
VpaK11BI GGWCC 1 cut(s) 297
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.