Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr3

Orthogroup ID

OG0008102

Physical Location & Seq

Genomic Coordinates Reverse (-)

17616311 .. 17620054

Gene Structure 3744 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom03g16420.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1314 bp

ATGGATCTGCTCTGCAACGCATACTCTAATGCCTCCGACAACGAAGAAGCAGAAGCAGAAGGAATTAAAGAAACCTTCACACCCCCCGACCCGAAGCGACTCAAACCCGATAACCCGTTTGCACATACCAAATTTCACCATCCTCTGCCGGAGTCAACCCAGTTTCCGACCCCCCAAGCAGAAGCTCCGGTTCCTGGTCGATACATATCCAAGAGGGAGAGGGCGTTATTGGCTACCCAACCTACTGTCCCCGAACCGAACCCGAACGCTCCTGTCACGACCTTGCCTGTTTTTGGGAGTATTTCGGATTCAGACGTTCGTCGAGATGTTATGTCGTTGTTGAGAAACAAAGGGAAAAAGGGTACATCGCAGCTTGGCCAATTGCCCCAAAGAATGTCTGTAGCTCTAAATAGGCATACCAAAGCTGTCAATGCTGTGCATTGGTCACCAACTCATGCTCATCTTCTTGCCTCTGCTTCAATGGATCACACAATCTGCATATGGAATGTGTGGAGCAGTGATCAGAAGGTAGCCCGTTTGTTGAATTTTCACAGTGCTGCAGTCAAAGATGTGAAATGGTCACATCAAGGATTGTCTGTTCTTTCTTGTGGATATGACTCCTCATCAAGGCTGGTAGATGTTGAAAAGGGGTTAGAGATGCAGGTTTTTAAGGAGGATCAAGTTGTCAGTGTTATTAAGTTCCATCCTGACAATTCCAACCTCTTCATATCGGGGGGCTCAAAAGGCGGAATCAGGTTGTGGGATGTTAGAAGTGGCAAGGTGGTCCATGAATATATTCGTGGTCATGATCCCATCCTTGATTTAGAATTCAGCACCAATAGCAAGCAGATTATATCCTCTAGTGATGTATCCGGACGCAACCTCAGTGAAAATTCTATTGTTGTTTGGGATGTTTCACGACAAGTTCCACTATCTAATCAGGTTTATGTGGAAGCCTTTACCTGTCCCTGTGTGAGATCCCACCCATTTGAACCATTTTTTGTTGCTCAGTCAAATGGTAATTATATTGCAATCTTCTCTTTAAGTCCCCCCTTCAAGCTGAACAAGTACAAGAGGTACGAAAGCCATGGAGTATCAGGGTTCCCCATTAAATGTGTATTTAGCTTGGATGGGGAAAAGCTAGTCTCGGGTTCCTCCGATGGTTCTTTATACTTCTATGACTACAGGTCTTCTGAGCTTGTTAGAAAAATCAAGGCGTATGAGCAGGCCTGCATAGACGTTGCTATCCACCCTGTCATGCCGAATGTGATTGCTTCGTGCAGTTGGAACGGAGAGGTTTCAGTGTTCGAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

WD40

Protein Analysis

438

Amino Acids

48.56

Weight (kDa)

6.97

Isoelectric Point (pI)

40.86

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008102)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G54520
fragaria_vesca	FvH4_3g21450 FvH4_3g21450 FvH4_3g21450 FvH4_3g21450 FvH4_3g21450
malus_domestica	MD03G1215900.v1.1 MD11G1230500.v1.1
prunus_persica	Prupe.4G196900_v2.0.a1 Prupe.4G196900_v2.0.a1 Prupe.4G196900_v2.0.a1 Prupe.4G196900_v2.0.a1 Prupe.4G196900_v2.0.a1
pyrus_communis	pycom03g16420
rosa_chinensis	RchiOBHm_Chr5g0036881
rosa_laevigata	RLG00000033731
rosa_multiflora	Rmu_sc0007663.1_g000001
rosa_roxburghii	Rroxscaffold_1G00044080
rosa_rugosa	Rorug05G0158500
rosa_samantha	Rh5AG251000 Rh5BG252400 Rh5CG285000 Rh5DG261000
rosa_wichuraiana	Rw5G023070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	652
AccIII	TCCGGA	1 cut(s)	872
AciI	CCGC	1 cut(s)	747
AclWI	GGATC	5 cut(s)	12, 492, 684, 803, 972
AcoI	YGGCCR	1 cut(s)	376
AcsI	RAATTY	4 cut(s)	131, 544, 827, 892
AfaI	GTAC	3 cut(s)	364, 1070, 1079
AfiI	CCNNNNNNNGG	3 cut(s)	194, 293, 627
AgsI	TTSAA	5 cut(s)	480, 544, 644, 992, 1057
AhdI	GACNNNNNGTC	1 cut(s)	1186
AjnI	CCWGG	1 cut(s)	193
AloI	GAACNNNNNNTCC	2 cut(s)	582, 614
AluBI	AGCT	8 cut(s)	185, 373, 404, 425, 1060, 1125, 1141, 1198
AluI	AGCT	8 cut(s)	185, 373, 404, 425, 1060, 1125, 1141, 1198
Alw26I	GTCTC	1 cut(s)	1150
AlwI	GGATC	5 cut(s)	12, 492, 684, 803, 972
Ama87I	CYCGRG	1 cut(s)	1147
Aor13HI	TCCGGA	1 cut(s)	872
AoxI	GGCC	2 cut(s)	376, 1227
ApeKI	GCWGC	2 cut(s)	370, 557
ApoI	RAATTY	4 cut(s)	131, 544, 827, 892
Asp700I	GAANNNNTTC	1 cut(s)	795
AspS9I	GGNCC	1 cut(s)	784
AsuHPI	GGTGA	2 cut(s)	128, 438
AvaI	CYCGRG	1 cut(s)	1147
AvaII	GGWCC	1 cut(s)	784
BalI	TGGCCA	1 cut(s)	378
BanII	GRGCYC	1 cut(s)	740
BbsI	GAAGAC	1 cut(s)	1182
BbvI	GCAGC	2 cut(s)	382, 544
BccI	CCATC	5 cut(s)	147, 711, 821, 1124, 1154
BciT130I	CCWGG	1 cut(s)	195
BciVI	GTATCC	1 cut(s)	880
BclI	TGATCA	1 cut(s)	520
BcoDI	GTCTC	1 cut(s)	1150
BfaI	CTAG	2 cut(s)	861, 1142
BfmI	CTRYAG	3 cut(s)	399, 558, 1183
BfuAI	ACCTGC	1 cut(s)	652
BfuI	GTATCC	1 cut(s)	880
BisI	GCNGC	2 cut(s)	371, 558
BlsI	GCNGC	2 cut(s)	372, 559
Bme1390I	CCNGG	1 cut(s)	195
Bme18I	GGWCC	1 cut(s)	784
BmeRI	GACNNNNNGTC	1 cut(s)	1186
BmeT110I	CYCGRG	1 cut(s)	1147
BmgT120I	GGNCC	1 cut(s)	784
BmiI	GGNNCC	3 cut(s)	192, 1103, 1153
BmrFI	CCNGG	1 cut(s)	195
BmrI	ACTGGG	1 cut(s)	154
BmsI	GCATC	1 cut(s)	648
BmuI	ACTGGG	1 cut(s)	154
BoxI	GACNNNNGTC	1 cut(s)	318
BpiI	GAAGAC	1 cut(s)	1182
BsaBI	GATNNNNATC	1 cut(s)	205
BsaJI	CCNNGG	1 cut(s)	1087
BsaWI	WCCGGW	2 cut(s)	187, 872
BsaXI	ACNNNNNCTCC	2 cut(s)	209, 239
Bsc4I	CCNNNNNNNGG	3 cut(s)	194, 293, 627
Bse1I	ACTGG	1 cut(s)	160
Bse8I	GATNNNNATC	1 cut(s)	205
BseAI	TCCGGA	1 cut(s)	872
BseBI	CCWGG	1 cut(s)	195
BseDI	CCNNGG	1 cut(s)	1087
BseGI	GGATG	6 cut(s)	139, 703, 769, 813, 916, 1135
BseJI	GATNNNNATC	1 cut(s)	205
BseLI	CCNNNNNNNGG	3 cut(s)	194, 293, 627
BseMII	CTCAG	3 cut(s)	898, 1022, 1185
BseNI	ACTGG	1 cut(s)	160
BseRI	GAGGAG	1 cut(s)	610
BseXI	GCAGC	2 cut(s)	382, 544
BsgI	GTGCAG	1 cut(s)	1300
BshFI	GGCC	2 cut(s)	378, 1229
BsiHKCI	CYCGRG	1 cut(s)	1147
BsiSI	CCGG	3 cut(s)	149, 188, 873
BslFI	GGGAC	3 cut(s)	233, 951, 1032
BslI	CCNNNNNNNGG	3 cut(s)	194, 293, 627
BsmAI	GTCTC	1 cut(s)	1150
BsmFI	GGGAC	3 cut(s)	233, 951, 1032
BsnI	GGCC	2 cut(s)	378, 1229
BsoBI	CYCGRG	1 cut(s)	1147
Bsp1286I	GDGCHC	1 cut(s)	740
Bsp13I	TCCGGA	1 cut(s)	872
Bsp143I	GATC	6 cut(s)	4, 484, 520, 676, 808, 977
Bsp19I	CCATGG	1 cut(s)	1087
BspACI	CCGC	1 cut(s)	747
BspANI	GGCC	2 cut(s)	378, 1229
BspCNI	CTCAG	3 cut(s)	897, 1021, 1186
BspEI	TCCGGA	1 cut(s)	872
BspHI	TCATGA	1 cut(s)	805
BspLI	GGNNCC	3 cut(s)	192, 1103, 1153
BspMAI	CTGCAG	1 cut(s)	562
BspMI	ACCTGC	1 cut(s)	652
BspPI	GGATC	5 cut(s)	12, 492, 684, 803, 972
BsrI	ACTGG	1 cut(s)	160
BssECI	CCNNGG	1 cut(s)	1087
BssMI	GATC	6 cut(s)	4, 484, 520, 676, 808, 977
BssT1I	CCWWGG	1 cut(s)	1087
Bst2UI	CCWGG	1 cut(s)	195
Bst4CI	ACNGT	2 cut(s)	247, 554
Bst6I	CTCTTC	1 cut(s)	728
BstC8I	GCNNGC	3 cut(s)	845, 1227, 1231
BstDEI	CTNAG	3 cut(s)	884, 1008, 1194
BstDSI	CCRYGG	1 cut(s)	1087
BstEII	GGTNACC	1 cut(s)	444
BstENI	CCTNNNNNAGG	1 cut(s)	625
BstF5I	GGATG	6 cut(s)	139, 703, 769, 813, 916, 1135
BstKTI	GATC	6 cut(s)	7, 487, 523, 679, 811, 980
BstMAI	GTCTC	1 cut(s)	1150
BstMBI	GATC	6 cut(s)	4, 484, 520, 676, 808, 977
BstMWI	GCNNNNNNNGC	4 cut(s)	230, 431, 744, 840
BstNI	CCWGG	1 cut(s)	195
BstPAI	GACNNNNGTC	1 cut(s)	318
BstPI	GGTNACC	1 cut(s)	444
BstSCI	CCNGG	1 cut(s)	193
BstSFI	CTRYAG	3 cut(s)	399, 558, 1183
BstV1I	GCAGC	2 cut(s)	382, 544
BstV2I	GAAGAC	1 cut(s)	1182
BstX2I	RGATCY	2 cut(s)	4, 977
BstYI	RGATCY	2 cut(s)	4, 977
BsuI	GTATCC	1 cut(s)	880
BsuRI	GGCC	2 cut(s)	378, 1229
BtgI	CCRYGG	1 cut(s)	1087
BtgZI	GCGATG	1 cut(s)	351
BtsCI	GGATG	6 cut(s)	139, 703, 769, 813, 916, 1135
BtsI	GCAGTG	1 cut(s)	523
BtsIMutI	CAGTG	5 cut(s)	523, 559, 694, 892, 1308
BveI	ACCTGC	1 cut(s)	652
Cac8I	GCNNGC	3 cut(s)	845, 1227, 1231
CciI	TCATGA	1 cut(s)	805
Cfr13I	GGNCC	1 cut(s)	784
CseI	GACGC	1 cut(s)	885
Csp6I	GTAC	3 cut(s)	363, 1069, 1078
CviAII	CATG	5 cut(s)	455, 788, 806, 1088, 1258
CviQI	GTAC	3 cut(s)	363, 1069, 1078
DdeI	CTNAG	3 cut(s)	884, 1008, 1194
DpnI	GATC	6 cut(s)	6, 486, 522, 678, 810, 979
DpnII	GATC	6 cut(s)	4, 484, 520, 676, 808, 977
DriI	GACNNNNNGTC	1 cut(s)	1186
EaeI	YGGCCR	1 cut(s)	376
Eam1104I	CTCTTC	1 cut(s)	728
Eam1105I	GACNNNNNGTC	1 cut(s)	1186
EarI	CTCTTC	1 cut(s)	728
EciI	GGCGGA	1 cut(s)	762
Eco130I	CCWWGG	1 cut(s)	1087
Eco147I	AGGCCT	1 cut(s)	1229
Eco24I	GRGCYC	1 cut(s)	740
Eco47I	GGWCC	1 cut(s)	784
Eco88I	CYCGRG	1 cut(s)	1147
Eco91I	GGTNACC	1 cut(s)	444
EcoNI	CCTNNNNNAGG	1 cut(s)	625
EcoO65I	GGTNACC	1 cut(s)	444
EcoRI	GAATTC	1 cut(s)	827
EcoRII	CCWGG	1 cut(s)	193
EcoT14I	CCWWGG	1 cut(s)	1087
EcoT38I	GRGCYC	1 cut(s)	740
ErhI	CCWWGG	1 cut(s)	1087
FaeI	CATG	5 cut(s)	458, 791, 809, 1091, 1261
FaqI	GGGAC	3 cut(s)	233, 951, 1032
FatI	CATG	5 cut(s)	454, 787, 805, 1087, 1257
FauNDI	CATATG	1 cut(s)	500
FbaI	TGATCA	1 cut(s)	520
Fnu4HI	GCNGC	2 cut(s)	371, 558
FokI	GGATG	6 cut(s)	126, 690, 776, 800, 923, 1142
FriOI	GRGCYC	1 cut(s)	740
Fsp4HI	GCNGC	2 cut(s)	371, 558
FspBI	CTAG	2 cut(s)	861, 1142
GluI	GCNGC	2 cut(s)	371, 558
HaeIII	GGCC	2 cut(s)	378, 1229
HapII	CCGG	3 cut(s)	149, 188, 873
HgaI	GACGC	1 cut(s)	885
Hin1II	CATG	5 cut(s)	458, 791, 809, 1091, 1261
HincII	GTYRAC	1 cut(s)	156
HindII	GTYRAC	1 cut(s)	156
HinfI	GANTC	5 cut(s)	99, 152, 308, 617, 750
HpaII	CCGG	3 cut(s)	149, 188, 873
HphI	GGTGA	2 cut(s)	128, 438
Hpy166II	GTNNAC	1 cut(s)	156
Hpy188I	TCNGA	7 cut(s)	37, 168, 307, 313, 525, 1159, 1195
Hpy188III	TCNNGA	6 cut(s)	277, 323, 707, 806, 873, 918
Hpy8I	GTNNAC	1 cut(s)	156
Hpy99I	CGWCG	1 cut(s)	324
HpyAV	CCTTC	4 cut(s)	53, 85, 520, 1063
HpyCH4III	ACNGT	2 cut(s)	247, 554
HpyCH4IV	ACGT	2 cut(s)	315, 1239
HpyCH4V	TGCA	9 cut(s)	15, 122, 439, 498, 560, 661, 1031, 1233, 1281
HpyF10VI	GCNNNNNNNGC	4 cut(s)	230, 431, 744, 840
HpyF3I	CTNAG	3 cut(s)	884, 1008, 1194
HpySE526I	ACGT	2 cut(s)	315, 1239
Hsp92II	CATG	5 cut(s)	458, 791, 809, 1091, 1261
Kpn2I	TCCGGA	1 cut(s)	872
Ksp22I	TGATCA	1 cut(s)	520
Kzo9I	GATC	6 cut(s)	4, 484, 520, 676, 808, 977
LmnI	GCTCC	3 cut(s)	190, 274, 513
Lsp1109I	GCAGC	2 cut(s)	382, 544
LweI	GCATC	1 cut(s)	648
MaeI	CTAG	2 cut(s)	861, 1142
MaeII	ACGT	2 cut(s)	315, 1239
MaeIII	GTNAC	3 cut(s)	274, 444, 579
MalI	GATC	6 cut(s)	6, 486, 522, 678, 810, 979
MboI	GATC	6 cut(s)	4, 484, 520, 676, 808, 977
MboII	GAAGA	5 cut(s)	56, 455, 715, 1027, 1182
MfeI	CAATTG	1 cut(s)	380
MflI	RGATCY	2 cut(s)	4, 977
MhlI	GDGCHC	1 cut(s)	740
MlsI	TGGCCA	1 cut(s)	378
MluCI	AATT	8 cut(s)	63, 131, 380, 544, 712, 827, 892, 1021
MluNI	TGGCCA	1 cut(s)	378
MlyI	GAGTC	3 cut(s)	93, 161, 611
MmeI	TCCRAC	4 cut(s)	60, 191, 741, 1265
Mox20I	TGGCCA	1 cut(s)	378
MroI	TCCGGA	1 cut(s)	872
MroXI	GAANNNNTTC	1 cut(s)	795
MscI	TGGCCA	1 cut(s)	378
MseI	TTAA	5 cut(s)	66, 669, 696, 1043, 1110
Msp20I	TGGCCA	1 cut(s)	378
MspI	CCGG	3 cut(s)	149, 188, 873
MspR9I	CCNGG	1 cut(s)	195
MunI	CAATTG	1 cut(s)	380
MvaI	CCWGG	1 cut(s)	195
MwoI	GCNNNNNNNGC	4 cut(s)	230, 431, 744, 840
NcoI	CCATGG	1 cut(s)	1087
NdeI	CATATG	1 cut(s)	500
NdeII	GATC	6 cut(s)	4, 484, 520, 676, 808, 977
NlaIII	CATG	5 cut(s)	458, 791, 809, 1091, 1261
NlaIV	GGNNCC	3 cut(s)	192, 1103, 1153
NmuCI	GTSAC	3 cut(s)	274, 444, 579
PagI	TCATGA	1 cut(s)	805
PceI	AGGCCT	1 cut(s)	1229
PdmI	GAANNNNTTC	1 cut(s)	795
PfeI	GAWTC	2 cut(s)	308, 750
PkrI	GCNGC	2 cut(s)	372, 559
PleI	GAGTC	3 cut(s)	93, 160, 611
PpsI	GAGTC	3 cut(s)	93, 160, 611
PshAI	GACNNNNGTC	1 cut(s)	318
Psp6I	CCWGG	1 cut(s)	193
PspEI	GGTNACC	1 cut(s)	444
PspGI	CCWGG	1 cut(s)	193
PspN4I	GGNNCC	3 cut(s)	192, 1103, 1153
PspPI	GGNCC	1 cut(s)	784
PstI	CTGCAG	1 cut(s)	562
PsuI	RGATCY	2 cut(s)	4, 977
RsaI	GTAC	3 cut(s)	364, 1070, 1079
RsaNI	GTAC	3 cut(s)	363, 1069, 1078
SaqAI	TTAA	5 cut(s)	66, 669, 696, 1043, 1110
SatI	GCNGC	2 cut(s)	371, 558
Sau3AI	GATC	6 cut(s)	4, 484, 520, 676, 808, 977
Sau96I	GGNCC	1 cut(s)	784
SchI	GAGTC	3 cut(s)	93, 161, 611
ScrFI	CCNGG	1 cut(s)	195
SduI	GDGCHC	1 cut(s)	740
SfaNI	GCATC	1 cut(s)	648
SfcI	CTRYAG	3 cut(s)	399, 558, 1183
SinI	GGWCC	1 cut(s)	784
Sse9I	AATT	8 cut(s)	63, 131, 380, 544, 712, 827, 892, 1021
SseBI	AGGCCT	1 cut(s)	1229
SsiI	CCGC	1 cut(s)	747
SspMI	CTAG	2 cut(s)	861, 1142
StuI	AGGCCT	1 cut(s)	1229
StyD4I	CCNGG	1 cut(s)	193
StyI	CCWWGG	1 cut(s)	1087
TaaI	ACNGT	2 cut(s)	247, 554
TaiI	ACGT	2 cut(s)	318, 1242
TaqI	TCGA	3 cut(s)	199, 322, 1308
TasI	AATT	8 cut(s)	63, 131, 380, 544, 712, 827, 892, 1021
TatI	WGTACW	1 cut(s)	1068
TfiI	GAWTC	2 cut(s)	308, 750
Tru1I	TTAA	5 cut(s)	66, 669, 696, 1043, 1110
Tru9I	TTAA	5 cut(s)	66, 669, 696, 1043, 1110
TscAI	CASTG	5 cut(s)	523, 559, 694, 892, 1308
TseFI	GTSAC	3 cut(s)	274, 444, 579
TseI	GCWGC	2 cut(s)	370, 557
Tsp45I	GTSAC	3 cut(s)	274, 444, 579
TspDTI	ATGAA	2 cut(s)	715, 804
TspGWI	ACGGA	1 cut(s)	1305
TspRI	CASTG	5 cut(s)	523, 559, 694, 892, 1308
VpaK11BI	GGWCC	1 cut(s)	784
XagI	CCTNNNNNAGG	1 cut(s)	625
XapI	RAATTY	4 cut(s)	131, 544, 827, 892
XmnI	GAANNNNTTC	1 cut(s)	795
XspI	CTAG	2 cut(s)	861, 1142

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.