Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp04

Orthogroup ID

OG0016415

Physical Location & Seq

Genomic Coordinates Forward (+)

12882369 .. 12883999

Gene Structure 1631 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.4G206400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 366 bp

ATGCCCACCAAATTTATGACTCCGCCCTTAGAAGAAGTTTCATGGAGTTATCACAATGGTGGCTGTTGGCCAACACTGCTGTGGTTGCTTACTGCAGCATGTATCGAGACAGGGAGGCCTCAGACTGCTAAGACAGCAATTGAACAGGTGGAGCAGCGGCTCTCAAAAGACGGGTGGCCAGAATACTATGACGGCAAGGCAGGGAGATATATCAGGAAGCAAGCGAGGAAGTACCAGACCTGGAGCATCTCAGGATATCTGGTAGCTAAACTGATGATCGAGAACCCAACCAATCTTTCACTAATCTTTCTTGAAGAGGACAAGAAGATAGCCAAGCCAAGGCTCACCCGCTCCGCTTCCTTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Glyco_hydro_100

Protein Analysis

122

Amino Acids

13.94

Weight (kDa)

9.3

Isoelectric Point (pI)

52.06

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016415)

Species	Orthologous Gene IDs
malus_domestica	MD07G1066500.v1.1
prunus_persica	Prupe.1G058000_v2.0.a1 Prupe.2G191500_v2.0.a1 Prupe.4G206400_v2.0.a1 Prupe.5G024000_v2.0.a1 Prupe.6G006600_v2.0.a1 Prupe.6G072900_v2.0.a1 Prupe.6G291200_v2.0.a1 Prupe.6G314000_v2.0.a1 Prupe.6G314000_v2.0.a1 Prupe.6G314000_v2.0.a1 Prupe.6G314000_v2.0.a1
rosa_multiflora	Rmu_co8407209.1_g000001 Rmu_co8435583.1_g000001 Rmu_ssc0000460.1_g000009

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	351
AciI	CCGC	4 cut(s)	23, 157, 349, 354
AcoI	YGGCCR	2 cut(s)	68, 176
AcsI	RAATTY	1 cut(s)	11
AfaI	GTAC	1 cut(s)	233
AfiI	CCNNNNNNNGG	1 cut(s)	339
AgsI	TTSAA	2 cut(s)	143, 314
AjnI	CCWGG	1 cut(s)	239
AjuI	GAANNNNNNNTTGG	2 cut(s)	280, 312
AleI	CACNNNNGTG	2 cut(s)	57, 79
AluBI	AGCT	1 cut(s)	266
AluI	AGCT	1 cut(s)	266
Alw26I	GTCTC	1 cut(s)	101
AoxI	GGCC	3 cut(s)	68, 116, 176
ApeKI	GCWGC	2 cut(s)	95, 154
ApoI	RAATTY	1 cut(s)	11
AsuHPI	GGTGA	1 cut(s)	337
BalI	TGGCCA	2 cut(s)	70, 178
BbvI	GCAGC	2 cut(s)	107, 166
BceAI	ACGGC	1 cut(s)	208
BciT130I	CCWGG	1 cut(s)	241
BcoDI	GTCTC	1 cut(s)	101
BfmI	CTRYAG	1 cut(s)	93
BisI	GCNGC	3 cut(s)	96, 155, 158
BlsI	GCNGC	3 cut(s)	97, 156, 159
Bme1390I	CCNGG	1 cut(s)	241
BmrFI	CCNGG	1 cut(s)	241
BmsI	GCATC	1 cut(s)	255
BpmI	CTGGAG	1 cut(s)	262
BsaJI	CCNNGG	1 cut(s)	338
Bsc4I	CCNNNNNNNGG	1 cut(s)	339
BseBI	CCWGG	1 cut(s)	241
BseDI	CCNNGG	1 cut(s)	338
BseLI	CCNNNNNNNGG	1 cut(s)	339
BseMII	CTCAG	2 cut(s)	134, 264
BseXI	GCAGC	2 cut(s)	107, 166
BshFI	GGCC	3 cut(s)	70, 118, 178
BslI	CCNNNNNNNGG	1 cut(s)	339
BsmAI	GTCTC	1 cut(s)	101
BsnI	GGCC	3 cut(s)	70, 118, 178
Bsp143I	GATC	1 cut(s)	276
BspACI	CCGC	4 cut(s)	23, 157, 349, 354
BspANI	GGCC	3 cut(s)	70, 118, 178
BspCNI	CTCAG	2 cut(s)	133, 263
BspMAI	CTGCAG	1 cut(s)	97
BsrBI	CCGCTC	1 cut(s)	351
BssECI	CCNNGG	1 cut(s)	338
BssMI	GATC	1 cut(s)	276
BssT1I	CCWWGG	1 cut(s)	338
Bst2UI	CCWGG	1 cut(s)	241
Bst6I	CTCTTC	1 cut(s)	309
BstC8I	GCNNGC	1 cut(s)	222
BstDEI	CTNAG	4 cut(s)	28, 120, 129, 250
BstKTI	GATC	1 cut(s)	279
BstMAI	GTCTC	1 cut(s)	101
BstMBI	GATC	1 cut(s)	276
BstMWI	GCNNNNNNNGC	3 cut(s)	76, 85, 134
BstNI	CCWGG	1 cut(s)	241
BstNSI	RCATGY	1 cut(s)	102
BstSCI	CCNGG	1 cut(s)	239
BstSFI	CTRYAG	1 cut(s)	93
BstV1I	GCAGC	2 cut(s)	107, 166
BsuRI	GGCC	3 cut(s)	70, 118, 178
BtsI	GCAGTG	1 cut(s)	74
BtsIMutI	CAGTG	1 cut(s)	74
Cac8I	GCNNGC	1 cut(s)	222
Csp6I	GTAC	1 cut(s)	232
CviAII	CATG	2 cut(s)	42, 99
CviJI	RGCY	9 cut(s)	63, 70, 118, 160, 178, 266, 332, 337, 343
CviKI_1	RGCY	9 cut(s)	63, 70, 118, 160, 178, 266, 332, 337, 343
CviQI	GTAC	1 cut(s)	232
DdeI	CTNAG	4 cut(s)	28, 120, 129, 250
DpnI	GATC	1 cut(s)	278
DpnII	GATC	1 cut(s)	276
EaeI	YGGCCR	2 cut(s)	68, 176
Eam1104I	CTCTTC	1 cut(s)	309
EarI	CTCTTC	1 cut(s)	309
EciI	GGCGGA	1 cut(s)	12
Eco130I	CCWWGG	1 cut(s)	338
Eco147I	AGGCCT	1 cut(s)	118
Eco32I	GATATC	1 cut(s)	257
EcoRII	CCWGG	1 cut(s)	239
EcoRV	GATATC	1 cut(s)	257
EcoT14I	CCWWGG	1 cut(s)	338
ErhI	CCWWGG	1 cut(s)	338
FaeI	CATG	2 cut(s)	45, 102
FaiI	YATR	5 cut(s)	17, 43, 100, 189, 210
FatI	CATG	2 cut(s)	41, 98
FauI	CCCGC	1 cut(s)	356
Fnu4HI	GCNGC	3 cut(s)	96, 155, 158
Fsp4HI	GCNGC	3 cut(s)	96, 155, 158
GluI	GCNGC	3 cut(s)	96, 155, 158
GsuI	CTGGAG	1 cut(s)	262
HaeIII	GGCC	3 cut(s)	70, 118, 178
Hin1II	CATG	2 cut(s)	45, 102
HinfI	GANTC	1 cut(s)	19
HphI	GGTGA	1 cut(s)	337
Hpy188I	TCNGA	1 cut(s)	123
Hpy188III	TCNNGA	5 cut(s)	106, 214, 252, 280, 311
HpyCH4V	TGCA	1 cut(s)	95
HpyF10VI	GCNNNNNNNGC	3 cut(s)	76, 85, 134
HpyF3I	CTNAG	4 cut(s)	28, 120, 129, 250
Hsp92II	CATG	2 cut(s)	45, 102
Kzo9I	GATC	1 cut(s)	276
LmnI	GCTCC	3 cut(s)	151, 243, 356
Lsp1109I	GCAGC	2 cut(s)	107, 166
LweI	GCATC	1 cut(s)	255
MalI	GATC	1 cut(s)	278
MbiI	CCGCTC	1 cut(s)	351
MboI	GATC	1 cut(s)	276
MboII	GAAGA	3 cut(s)	44, 326, 337
MfeI	CAATTG	1 cut(s)	138
MlsI	TGGCCA	2 cut(s)	70, 178
MluCI	AATT	2 cut(s)	11, 138
MluNI	TGGCCA	2 cut(s)	70, 178
MlyI	GAGTC	1 cut(s)	13
MnlI	CCTC	4 cut(s)	108, 129, 219, 310
Mox20I	TGGCCA	2 cut(s)	70, 178
MscI	TGGCCA	2 cut(s)	70, 178
MslI	CAYNNNNRTG	2 cut(s)	57, 79
Msp20I	TGGCCA	2 cut(s)	70, 178
MspA1I	CMGCKG	1 cut(s)	157
MspR9I	CCNGG	1 cut(s)	241
MunI	CAATTG	1 cut(s)	138
MvaI	CCWGG	1 cut(s)	241
MwoI	GCNNNNNNNGC	3 cut(s)	76, 85, 134
NdeII	GATC	1 cut(s)	276
NlaIII	CATG	2 cut(s)	45, 102
NspI	RCATGY	1 cut(s)	102
OliI	CACNNNNGTG	2 cut(s)	57, 79
PceI	AGGCCT	1 cut(s)	118
PkrI	GCNGC	3 cut(s)	97, 156, 159
PleI	GAGTC	1 cut(s)	13
PpsI	GAGTC	1 cut(s)	13
Psp6I	CCWGG	1 cut(s)	239
PspGI	CCWGG	1 cut(s)	239
PstI	CTGCAG	1 cut(s)	97
RsaI	GTAC	1 cut(s)	233
RsaNI	GTAC	1 cut(s)	232
RseI	CAYNNNNRTG	2 cut(s)	57, 79
SatI	GCNGC	3 cut(s)	96, 155, 158
Sau3AI	GATC	1 cut(s)	276
SchI	GAGTC	1 cut(s)	13
ScrFI	CCNGG	1 cut(s)	241
SetI	ASST	3 cut(s)	150, 242, 268
SfaNI	GCATC	1 cut(s)	255
SfcI	CTRYAG	1 cut(s)	93
SmiMI	CAYNNNNRTG	2 cut(s)	57, 79
Sse9I	AATT	2 cut(s)	11, 138
SseBI	AGGCCT	1 cut(s)	118
SsiI	CCGC	4 cut(s)	23, 157, 349, 354
StuI	AGGCCT	1 cut(s)	118
StyD4I	CCNGG	1 cut(s)	239
StyI	CCWWGG	1 cut(s)	338
TaqI	TCGA	2 cut(s)	105, 279
TasI	AATT	2 cut(s)	11, 138
TauI	GCSGC	1 cut(s)	160
TscAI	CASTG	1 cut(s)	81
TseI	GCWGC	2 cut(s)	95, 154
TspDTI	ATGAA	1 cut(s)	30
TspRI	CASTG	1 cut(s)	81
XapI	RAATTY	1 cut(s)	11
XceI	RCATGY	1 cut(s)	102
XcmI	CCANNNNNNNNNTGG	1 cut(s)	78

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.