Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8435583.1

Orthogroup ID

OG0016415

Physical Location & Seq

Genomic Coordinates Reverse (-)

668 .. 1293

Gene Structure 626 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8435583.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 441 bp

atgctgtcgttagaacgagggcacattgctgtgttgcaagtgaaagacacattgcacaaacataacttgactgccaatgagttaacaaatctagttatagcatgctattactggaaggagggtctcactgtggcttgcataaagctcgacagaccagaaattgcatcaaaagctctcaagctggctgagaaacgcatatctcatgacaagtggccggaatattatgacaccaagcgagcaagatttattggaaaacaagcacagctgtatcaaacttggacggttgctggatacctagtagcaaagctcctccttgataacccaagtgcagcaaagaacattgtgaatgaagaagattcagagcttgtaaatgcattttcttgcatgataagttccaacccaagaaggaagcgtgtttggaagaaacagattttagtttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0004553 GO:0004564 GO:0004575 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005975 GO:0005976 GO:0005982 GO:0005984 GO:0005985 GO:0005987 GO:0006073 GO:0007275 GO:0008150 GO:0008152 GO:0009056 GO:0009311 GO:0009313 GO:0009507 GO:0009536 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0010154 GO:0015926 GO:0016052 GO:0016787 GO:0016798 GO:0022414 GO:0032501 GO:0032502 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044042 GO:0044237 GO:0044238 GO:0044248 GO:0044260 GO:0044262 GO:0044264 GO:0044275 GO:0044424 GO:0044444 GO:0044464 GO:0046352 GO:0048316 GO:0048366 GO:0048367 GO:0048608 GO:0048731 GO:0048825 GO:0048827 GO:0048856 GO:0061458 GO:0071704 GO:0090599 GO:0099402 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Glyco_hydro_100

Protein Analysis

146

Amino Acids

16.8

Weight (kDa)

9.47

Isoelectric Point (pI)

50.44

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016415)

Species	Orthologous Gene IDs
malus_domestica	MD07G1066500.v1.1
prunus_persica	Prupe.1G058000_v2.0.a1 Prupe.2G191500_v2.0.a1 Prupe.4G206400_v2.0.a1 Prupe.5G024000_v2.0.a1 Prupe.6G006600_v2.0.a1 Prupe.6G072900_v2.0.a1 Prupe.6G291200_v2.0.a1 Prupe.6G314000_v2.0.a1 Prupe.6G314000_v2.0.a1 Prupe.6G314000_v2.0.a1 Prupe.6G314000_v2.0.a1
rosa_multiflora	Rmu_co8407209.1_g000001 Rmu_co8435583.1_g000001 Rmu_ssc0000460.1_g000009

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcoI	YGGCCR	1 cut(s)	212
AluBI	AGCT	6 cut(s)	145, 173, 181, 265, 307, 364
AluI	AGCT	6 cut(s)	145, 173, 181, 265, 307, 364
Alw26I	GTCTC	1 cut(s)	128
AoxI	GGCC	1 cut(s)	212
ApeKI	GCWGC	1 cut(s)	329
BaeGI	GKGCMC	1 cut(s)	24
BaeI	ACNNNNGTAYC	2 cut(s)	251, 284
BbvI	GCAGC	1 cut(s)	341
BcgI	CGANNNNNNTGC	2 cut(s)	127, 161
BciVI	GTATCC	1 cut(s)	284
BcoDI	GTCTC	1 cut(s)	128
BfaI	CTAG	2 cut(s)	92, 296
BfuI	GTATCC	1 cut(s)	284
BisI	GCNGC	1 cut(s)	330
BlsI	GCNGC	1 cut(s)	331
BmsI	GCATC	1 cut(s)	173
BpuEI	CTTGAG	1 cut(s)	161
BsaI	GGTCTC	1 cut(s)	128
Bse1I	ACTGG	1 cut(s)	116
Bse3DI	GCAATG	2 cut(s)	24, 50
BseMI	GCAATG	2 cut(s)	24, 50
BseMII	CTCAG	1 cut(s)	177
BseNI	ACTGG	1 cut(s)	116
BseRI	GAGGAG	1 cut(s)	299
BseSI	GKGCMC	1 cut(s)	24
BseXI	GCAGC	1 cut(s)	341
BsgI	GTGCAG	1 cut(s)	348
BshFI	GGCC	1 cut(s)	214
BsiSI	CCGG	1 cut(s)	215
BsmAI	GTCTC	1 cut(s)	128
BsnI	GGCC	1 cut(s)	214
Bso31I	GGTCTC	1 cut(s)	128
Bsp1286I	GDGCHC	1 cut(s)	24
BspANI	GGCC	1 cut(s)	214
BspCNI	CTCAG	1 cut(s)	178
BspHI	TCATGA	1 cut(s)	202
BspTNI	GGTCTC	1 cut(s)	128
BsrDI	GCAATG	2 cut(s)	24, 50
BsrI	ACTGG	1 cut(s)	116
Bst4CI	ACNGT	2 cut(s)	130, 283
BstC8I	GCNNGC	4 cut(s)	103, 136, 183, 237
BstDEI	CTNAG	1 cut(s)	186
BstMAI	GTCTC	1 cut(s)	128
BstMWI	GCNNNNNNNGC	1 cut(s)	170
BstNSI	RCATGY	1 cut(s)	105
BstSLI	GKGCMC	1 cut(s)	24
BstV1I	GCAGC	1 cut(s)	341
BsuI	GTATCC	1 cut(s)	284
BsuRI	GGCC	1 cut(s)	214
BtsIMutI	CAGTG	1 cut(s)	126
Cac8I	GCNNGC	4 cut(s)	103, 136, 183, 237
CciI	TCATGA	1 cut(s)	202
CviAII	CATG	3 cut(s)	102, 203, 385
CviJI	RGCY	9 cut(s)	134, 145, 173, 181, 185, 214, 265, 307, 364
CviKI_1	RGCY	9 cut(s)	134, 145, 173, 181, 185, 214, 265, 307, 364
DdeI	CTNAG	1 cut(s)	186
EaeI	YGGCCR	1 cut(s)	212
Eco31I	GGTCTC	1 cut(s)	128
EcoT22I	ATGCAT	1 cut(s)	376
FaeI	CATG	3 cut(s)	105, 206, 388
FaiI	YATR	8 cut(s)	63, 98, 103, 140, 197, 204, 225, 386
FatI	CATG	3 cut(s)	101, 202, 384
Fnu4HI	GCNGC	1 cut(s)	330
Fsp4HI	GCNGC	1 cut(s)	330
FspBI	CTAG	2 cut(s)	92, 296
GluI	GCNGC	1 cut(s)	330
HaeIII	GGCC	1 cut(s)	214
HapII	CCGG	1 cut(s)	215
Hin1II	CATG	3 cut(s)	105, 206, 388
HincII	GTYRAC	1 cut(s)	84
HindII	GTYRAC	1 cut(s)	84
HinfI	GANTC	1 cut(s)	356
HpaI	GTTAAC	1 cut(s)	84
HpaII	CCGG	1 cut(s)	215
Hpy166II	GTNNAC	1 cut(s)	84
Hpy188I	TCNGA	1 cut(s)	361
Hpy188III	TCNNGA	1 cut(s)	203
Hpy8I	GTNNAC	1 cut(s)	84
HpyAV	CCTTC	2 cut(s)	109, 399
HpyCH4III	ACNGT	2 cut(s)	130, 283
HpyCH4V	TGCA	7 cut(s)	37, 55, 138, 164, 329, 374, 384
HpyF10VI	GCNNNNNNNGC	1 cut(s)	170
HpyF3I	CTNAG	1 cut(s)	186
Hsp92II	CATG	3 cut(s)	105, 206, 388
KspAI	GTTAAC	1 cut(s)	84
LmnI	GCTCC	1 cut(s)	312
LpnPI	CCDG	5 cut(s)	97, 167, 168, 228, 273
Lsp1109I	GCAGC	1 cut(s)	341
LweI	GCATC	1 cut(s)	173
MaeI	CTAG	2 cut(s)	92, 296
MboII	GAAGA	3 cut(s)	362, 365, 433
MhlI	GDGCHC	1 cut(s)	24
MluCI	AATT	1 cut(s)	159
MmeI	TCCRAC	1 cut(s)	420
MnlI	CCTC	3 cut(s)	11, 112, 320
Mph1103I	ATGCAT	1 cut(s)	376
MseI	TTAA	1 cut(s)	83
MslI	CAYNNNNRTG	1 cut(s)	29
MspA1I	CMGCKG	1 cut(s)	265
MspI	CCGG	1 cut(s)	215
MwoI	GCNNNNNNNGC	1 cut(s)	170
NlaIII	CATG	3 cut(s)	105, 206, 388
NsiI	ATGCAT	1 cut(s)	376
NspI	RCATGY	1 cut(s)	105
PaeI	GCATGC	1 cut(s)	105
PagI	TCATGA	1 cut(s)	202
PfeI	GAWTC	1 cut(s)	356
PkrI	GCNGC	1 cut(s)	331
PvuII	CAGCTG	1 cut(s)	265
RseI	CAYNNNNRTG	1 cut(s)	29
SaqAI	TTAA	1 cut(s)	83
SatI	GCNGC	1 cut(s)	330
SduI	GDGCHC	1 cut(s)	24
SetI	ASST	7 cut(s)	147, 175, 183, 267, 297, 309, 366
SfaNI	GCATC	1 cut(s)	173
SmiMI	CAYNNNNRTG	1 cut(s)	29
SmlI	CTYRAG	1 cut(s)	176
SmoI	CTYRAG	1 cut(s)	176
SphI	GCATGC	1 cut(s)	105
Sse9I	AATT	1 cut(s)	159
SspI	AATATT	1 cut(s)	221
SspMI	CTAG	2 cut(s)	92, 296
TaaI	ACNGT	2 cut(s)	130, 283
TaqI	TCGA	1 cut(s)	147
TasI	AATT	1 cut(s)	159
TfiI	GAWTC	1 cut(s)	356
Tru1I	TTAA	1 cut(s)	83
Tru9I	TTAA	1 cut(s)	83
TscAI	CASTG	1 cut(s)	133
TseI	GCWGC	1 cut(s)	329
TspDTI	ATGAA	1 cut(s)	363
TspRI	CASTG	1 cut(s)	133
XceI	RCATGY	1 cut(s)	105
XspI	CTAG	2 cut(s)	92, 296
Zsp2I	ATGCAT	1 cut(s)	376

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.