Prupe.6G006600_v2.0.a1

Alkaline neutral invertase CINV2-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp06
OG0016415
Physical Location & Seq
Reverse (-)
563185 .. 564153
969 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.6G006600.1

Sequence Viewer

Length: 333 bp
GAAGTTTCATGGAGTTATCACAATGGTAGCTCTTGGCCAACACTGCTGTGGTTGCTTACTGCAGCATGTATCAGGACGGGGAGGCCTCAGACTGCTAAGAGAGCAATTGAACAGGTGGAGCAGCGGCTCTCAAAAGACGGGTGGCCAGAATACTATGACAGCAAGGCAGGGAGATATGTCAGGAAGCAAGCGAGGAAGTACAATACCTGGAGCATCTCAGGATATCTGGTAGCTAAACTGATGATCGAGAACCCAGCCAATCTTTCACTAATCCCTCTTGAAGAGGACAAGAAGATAGCCAAGCCAAGGCTCACCCGCTCCGCTTCCTTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Glyco_hydro_100

Protein Analysis

111

Amino Acids

12.69

Weight (kDa)

9.83

Isoelectric Point (pI)

49.87

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 318
AciI CCGC 3 cut(s) 124, 316, 321
AcoI YGGCCR 2 cut(s) 35, 143
AfaI GTAC 1 cut(s) 200
AfiI CCNNNNNNNGG 1 cut(s) 306
AgsI TTSAA 2 cut(s) 110, 281
AjnI CCWGG 1 cut(s) 206
AleI CACNNNNGTG 1 cut(s) 46
AluBI AGCT 2 cut(s) 30, 233
AluI AGCT 2 cut(s) 30, 233
AoxI GGCC 3 cut(s) 35, 83, 143
ApeKI GCWGC 2 cut(s) 62, 121
AsuHPI GGTGA 1 cut(s) 304
BalI TGGCCA 2 cut(s) 37, 145
BbvI GCAGC 2 cut(s) 74, 133
BciT130I CCWGG 1 cut(s) 208
BfmI CTRYAG 1 cut(s) 60
BisI GCNGC 3 cut(s) 63, 122, 125
BlsI GCNGC 3 cut(s) 64, 123, 126
Bme1390I CCNGG 1 cut(s) 208
BmrFI CCNGG 1 cut(s) 208
BmsI GCATC 1 cut(s) 222
BpmI CTGGAG 1 cut(s) 229
BsaJI CCNNGG 1 cut(s) 305
Bsc4I CCNNNNNNNGG 1 cut(s) 306
BseBI CCWGG 1 cut(s) 208
BseDI CCNNGG 1 cut(s) 305
BseLI CCNNNNNNNGG 1 cut(s) 306
BseMII CTCAG 2 cut(s) 101, 231
BseXI GCAGC 2 cut(s) 74, 133
BseYI CCCAGC 1 cut(s) 253
BshFI GGCC 3 cut(s) 37, 85, 145
BslI CCNNNNNNNGG 1 cut(s) 306
BsnI GGCC 3 cut(s) 37, 85, 145
Bsp143I GATC 1 cut(s) 243
BspACI CCGC 3 cut(s) 124, 316, 321
BspANI GGCC 3 cut(s) 37, 85, 145
BspCNI CTCAG 2 cut(s) 100, 230
BspMAI CTGCAG 1 cut(s) 64
BsrBI CCGCTC 1 cut(s) 318
BssECI CCNNGG 1 cut(s) 305
BssMI GATC 1 cut(s) 243
BssT1I CCWWGG 1 cut(s) 305
Bst2UI CCWGG 1 cut(s) 208
Bst6I CTCTTC 1 cut(s) 276
BstC8I GCNNGC 1 cut(s) 189
BstDEI CTNAG 3 cut(s) 87, 96, 217
BstKTI GATC 1 cut(s) 246
BstMBI GATC 1 cut(s) 243
BstMWI GCNNNNNNNGC 3 cut(s) 43, 52, 101
BstNI CCWGG 1 cut(s) 208
BstNSI RCATGY 1 cut(s) 69
BstSCI CCNGG 1 cut(s) 206
BstSFI CTRYAG 1 cut(s) 60
BstV1I GCAGC 2 cut(s) 74, 133
BsuRI GGCC 3 cut(s) 37, 85, 145
BtsI GCAGTG 1 cut(s) 41
BtsIMutI CAGTG 1 cut(s) 41
Cac8I GCNNGC 1 cut(s) 189
Csp6I GTAC 1 cut(s) 199
CviAII CATG 2 cut(s) 9, 66
CviQI GTAC 1 cut(s) 199
DdeI CTNAG 3 cut(s) 87, 96, 217
DpnI GATC 1 cut(s) 245
DpnII GATC 1 cut(s) 243
EaeI YGGCCR 2 cut(s) 35, 143
Eam1104I CTCTTC 1 cut(s) 276
EarI CTCTTC 1 cut(s) 276
Eco130I CCWWGG 1 cut(s) 305
Eco147I AGGCCT 1 cut(s) 85
Eco32I GATATC 1 cut(s) 224
EcoRII CCWGG 1 cut(s) 206
EcoRV GATATC 1 cut(s) 224
EcoT14I CCWWGG 1 cut(s) 305
ErhI CCWWGG 1 cut(s) 305
FaeI CATG 2 cut(s) 12, 69
FaiI YATR 4 cut(s) 10, 67, 156, 177
FatI CATG 2 cut(s) 8, 65
FauI CCCGC 1 cut(s) 323
Fnu4HI GCNGC 3 cut(s) 63, 122, 125
Fsp4HI GCNGC 3 cut(s) 63, 122, 125
GluI GCNGC 3 cut(s) 63, 122, 125
GsaI CCCAGC 1 cut(s) 257
GsuI CTGGAG 1 cut(s) 229
HaeIII GGCC 3 cut(s) 37, 85, 145
Hin1II CATG 2 cut(s) 12, 69
HphI GGTGA 1 cut(s) 304
Hpy188I TCNGA 1 cut(s) 90
Hpy188III TCNNGA 5 cut(s) 73, 181, 219, 247, 278
HpyCH4V TGCA 1 cut(s) 62
HpyF10VI GCNNNNNNNGC 3 cut(s) 43, 52, 101
HpyF3I CTNAG 3 cut(s) 87, 96, 217
Hsp92II CATG 2 cut(s) 12, 69
Kzo9I GATC 1 cut(s) 243
LmnI GCTCC 3 cut(s) 118, 210, 323
Lsp1109I GCAGC 2 cut(s) 74, 133
LweI GCATC 1 cut(s) 222
MalI GATC 1 cut(s) 245
MbiI CCGCTC 1 cut(s) 318
MboI GATC 1 cut(s) 243
MboII GAAGA 2 cut(s) 293, 304
MfeI CAATTG 1 cut(s) 105
MlsI TGGCCA 2 cut(s) 37, 145
MluCI AATT 1 cut(s) 105
MluNI TGGCCA 2 cut(s) 37, 145
MnlI CCTC 5 cut(s) 75, 96, 186, 277, 285
Mox20I TGGCCA 2 cut(s) 37, 145
MscI TGGCCA 2 cut(s) 37, 145
MslI CAYNNNNRTG 1 cut(s) 46
Msp20I TGGCCA 2 cut(s) 37, 145
MspA1I CMGCKG 1 cut(s) 124
MspR9I CCNGG 1 cut(s) 208
MunI CAATTG 1 cut(s) 105
MvaI CCWGG 1 cut(s) 208
MwoI GCNNNNNNNGC 3 cut(s) 43, 52, 101
NdeII GATC 1 cut(s) 243
NlaIII CATG 2 cut(s) 12, 69
NspI RCATGY 1 cut(s) 69
OliI CACNNNNGTG 1 cut(s) 46
PceI AGGCCT 1 cut(s) 85
PkrI GCNGC 3 cut(s) 64, 123, 126
Psp6I CCWGG 1 cut(s) 206
PspFI CCCAGC 1 cut(s) 253
PspGI CCWGG 1 cut(s) 206
PstI CTGCAG 1 cut(s) 64
RsaI GTAC 1 cut(s) 200
RsaNI GTAC 1 cut(s) 199
RseI CAYNNNNRTG 1 cut(s) 46
SatI GCNGC 3 cut(s) 63, 122, 125
Sau3AI GATC 1 cut(s) 243
ScrFI CCNGG 1 cut(s) 208
SetI ASST 4 cut(s) 32, 117, 209, 235
SfaNI GCATC 1 cut(s) 222
SfcI CTRYAG 1 cut(s) 60
SmiMI CAYNNNNRTG 1 cut(s) 46
Sse9I AATT 1 cut(s) 105
SseBI AGGCCT 1 cut(s) 85
SsiI CCGC 3 cut(s) 124, 316, 321
StuI AGGCCT 1 cut(s) 85
StyD4I CCNGG 1 cut(s) 206
StyI CCWWGG 1 cut(s) 305
TaqI TCGA 1 cut(s) 246
TasI AATT 1 cut(s) 105
TatI WGTACW 1 cut(s) 198
TauI GCSGC 1 cut(s) 127
TscAI CASTG 1 cut(s) 48
TseI GCWGC 2 cut(s) 62, 121
TspRI CASTG 1 cut(s) 48
XceI RCATGY 1 cut(s) 69
XcmI CCANNNNNNNNNTGG 1 cut(s) 45
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.