Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

OG0016415

Physical Location & Seq

Genomic Coordinates Forward (+)

4977474 .. 4978432

Gene Structure 959 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G072900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 255 bp

ATGGTGGTTGTTGGCCAAGTAAGTCTCATGGAGATGGTGGAGCAGCGGCTCTCAAAAGACGGGTGGCCAGAATACTATGACGGCAAGGCAGGGAGGTATATTGGGAAGCAAGCGAGGAAGTACCAGACCTGGAGCATCTCAGGATATCTGGTAGCTGAACTGATGATCGAGAACCCAGCCAATCTTTCACTAATCTCTCTTGAAGAGGACAAGAAGATAGCCAAGCCAAGGCTCACCCGCTCTGCTTCCTTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Glyco_hydro_100

Protein Analysis

85

Amino Acids

9.57

Weight (kDa)

8.96

Isoelectric Point (pI)

29.96

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016415)

Species	Orthologous Gene IDs
malus_domestica	MD07G1066500.v1.1
prunus_persica	Prupe.1G058000_v2.0.a1 Prupe.2G191500_v2.0.a1 Prupe.4G206400_v2.0.a1 Prupe.5G024000_v2.0.a1 Prupe.6G006600_v2.0.a1 Prupe.6G072900_v2.0.a1 Prupe.6G291200_v2.0.a1 Prupe.6G314000_v2.0.a1 Prupe.6G314000_v2.0.a1 Prupe.6G314000_v2.0.a1 Prupe.6G314000_v2.0.a1
rosa_multiflora	Rmu_co8407209.1_g000001 Rmu_co8435583.1_g000001 Rmu_ssc0000460.1_g000009

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	240
AciI	CCGC	2 cut(s)	46, 238
AcoI	YGGCCR	2 cut(s)	13, 65
AfaI	GTAC	1 cut(s)	122
AfiI	CCNNNNNNNGG	1 cut(s)	228
AgsI	TTSAA	1 cut(s)	203
AjnI	CCWGG	1 cut(s)	128
AluBI	AGCT	1 cut(s)	155
AluI	AGCT	1 cut(s)	155
Alw26I	GTCTC	1 cut(s)	29
AoxI	GGCC	2 cut(s)	13, 65
ApeKI	GCWGC	1 cut(s)	43
AsuHPI	GGTGA	1 cut(s)	226
BalI	TGGCCA	2 cut(s)	15, 67
BbvI	GCAGC	1 cut(s)	55
BccI	CCATC	1 cut(s)	28
BceAI	ACGGC	1 cut(s)	97
BciT130I	CCWGG	1 cut(s)	130
BcoDI	GTCTC	1 cut(s)	29
BisI	GCNGC	2 cut(s)	44, 47
BlsI	GCNGC	2 cut(s)	45, 48
Bme1390I	CCNGG	1 cut(s)	130
BmrFI	CCNGG	1 cut(s)	130
BmsI	GCATC	1 cut(s)	144
BpmI	CTGGAG	1 cut(s)	151
BsaJI	CCNNGG	1 cut(s)	227
Bsc4I	CCNNNNNNNGG	1 cut(s)	228
BseBI	CCWGG	1 cut(s)	130
BseDI	CCNNGG	1 cut(s)	227
BseLI	CCNNNNNNNGG	1 cut(s)	228
BseMII	CTCAG	1 cut(s)	153
BseXI	GCAGC	1 cut(s)	55
BseYI	CCCAGC	1 cut(s)	175
BshFI	GGCC	2 cut(s)	15, 67
BslI	CCNNNNNNNGG	1 cut(s)	228
BsmAI	GTCTC	1 cut(s)	29
BsnI	GGCC	2 cut(s)	15, 67
Bsp143I	GATC	1 cut(s)	165
BspACI	CCGC	2 cut(s)	46, 238
BspANI	GGCC	2 cut(s)	15, 67
BspCNI	CTCAG	1 cut(s)	152
BsrBI	CCGCTC	1 cut(s)	240
BssECI	CCNNGG	1 cut(s)	227
BssMI	GATC	1 cut(s)	165
BssT1I	CCWWGG	1 cut(s)	227
Bst2UI	CCWGG	1 cut(s)	130
Bst6I	CTCTTC	1 cut(s)	198
BstC8I	GCNNGC	1 cut(s)	111
BstDEI	CTNAG	1 cut(s)	139
BstKTI	GATC	1 cut(s)	168
BstMAI	GTCTC	1 cut(s)	29
BstMBI	GATC	1 cut(s)	165
BstNI	CCWGG	1 cut(s)	130
BstSCI	CCNGG	1 cut(s)	128
BstV1I	GCAGC	1 cut(s)	55
BsuRI	GGCC	2 cut(s)	15, 67
Cac8I	GCNNGC	1 cut(s)	111
Csp6I	GTAC	1 cut(s)	121
CviAII	CATG	1 cut(s)	28
CviJI	RGCY	8 cut(s)	15, 49, 67, 155, 179, 221, 226, 232
CviKI_1	RGCY	8 cut(s)	15, 49, 67, 155, 179, 221, 226, 232
CviQI	GTAC	1 cut(s)	121
DdeI	CTNAG	1 cut(s)	139
DpnI	GATC	1 cut(s)	167
DpnII	GATC	1 cut(s)	165
EaeI	YGGCCR	2 cut(s)	13, 65
Eam1104I	CTCTTC	1 cut(s)	198
EarI	CTCTTC	1 cut(s)	198
Eco130I	CCWWGG	1 cut(s)	227
Eco32I	GATATC	1 cut(s)	146
EcoRII	CCWGG	1 cut(s)	128
EcoRV	GATATC	1 cut(s)	146
EcoT14I	CCWWGG	1 cut(s)	227
ErhI	CCWWGG	1 cut(s)	227
FaeI	CATG	1 cut(s)	31
FaiI	YATR	3 cut(s)	29, 78, 99
FatI	CATG	1 cut(s)	27
FauI	CCCGC	1 cut(s)	245
Fnu4HI	GCNGC	2 cut(s)	44, 47
Fsp4HI	GCNGC	2 cut(s)	44, 47
GluI	GCNGC	2 cut(s)	44, 47
GsaI	CCCAGC	1 cut(s)	179
GsuI	CTGGAG	1 cut(s)	151
HaeIII	GGCC	2 cut(s)	15, 67
Hin1II	CATG	1 cut(s)	31
HphI	GGTGA	1 cut(s)	226
Hpy188III	TCNNGA	3 cut(s)	141, 169, 200
HpyF3I	CTNAG	1 cut(s)	139
Hsp92II	CATG	1 cut(s)	31
Kzo9I	GATC	1 cut(s)	165
LmnI	GCTCC	2 cut(s)	40, 132
LpnPI	CCDG	8 cut(s)	75, 81, 115, 126, 134, 137, 142, 189
Lsp1109I	GCAGC	1 cut(s)	55
LweI	GCATC	1 cut(s)	144
MalI	GATC	1 cut(s)	167
MbiI	CCGCTC	1 cut(s)	240
MboI	GATC	1 cut(s)	165
MboII	GAAGA	2 cut(s)	215, 226
MlsI	TGGCCA	2 cut(s)	15, 67
MluNI	TGGCCA	2 cut(s)	15, 67
MnlI	CCTC	3 cut(s)	87, 108, 199
Mox20I	TGGCCA	2 cut(s)	15, 67
MscI	TGGCCA	2 cut(s)	15, 67
MslI	CAYNNNNRTG	1 cut(s)	32
Msp20I	TGGCCA	2 cut(s)	15, 67
MspA1I	CMGCKG	1 cut(s)	46
MspR9I	CCNGG	1 cut(s)	130
MvaI	CCWGG	1 cut(s)	130
NdeII	GATC	1 cut(s)	165
NlaIII	CATG	1 cut(s)	31
PkrI	GCNGC	2 cut(s)	45, 48
Psp6I	CCWGG	1 cut(s)	128
PspFI	CCCAGC	1 cut(s)	175
PspGI	CCWGG	1 cut(s)	128
RsaI	GTAC	1 cut(s)	122
RsaNI	GTAC	1 cut(s)	121
RseI	CAYNNNNRTG	1 cut(s)	32
SatI	GCNGC	2 cut(s)	44, 47
Sau3AI	GATC	1 cut(s)	165
ScrFI	CCNGG	1 cut(s)	130
SetI	ASST	3 cut(s)	98, 131, 157
SfaNI	GCATC	1 cut(s)	144
SmiMI	CAYNNNNRTG	1 cut(s)	32
SsiI	CCGC	2 cut(s)	46, 238
StyD4I	CCNGG	1 cut(s)	128
StyI	CCWWGG	1 cut(s)	227
TaqI	TCGA	1 cut(s)	168
TauI	GCSGC	1 cut(s)	49
TseI	GCWGC	1 cut(s)	43

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.