Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8407209.1

Orthogroup ID

OG0016415

Physical Location & Seq

Genomic Coordinates Reverse (-)

172 .. 456

Gene Structure 285 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8407209.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 285 bp

atgctaacggctgcctgcattaaaacgggacgaccacaaattgcaagaaagacaattgagcttgctgagagtcgtctgctaaaagattcttggccagaatattatgatgggaaactagggagatatattggcaaacaggcaaggaagtaccagacatggtcaatatctggatatctggttgcaaagatgatgctagaagatccatctcacttgggtatgatctcactggaagaggacaagcaaatgaagcctgtaattaggagatcatcatcgtggacttgctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000302 GO:0003674 GO:0003824 GO:0004553 GO:0004564 GO:0004575 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0005886 GO:0005975 GO:0005984 GO:0005985 GO:0005987 GO:0006082 GO:0006520 GO:0006807 GO:0006950 GO:0006979 GO:0007275 GO:0008150 GO:0008152 GO:0009056 GO:0009311 GO:0009313 GO:0009555 GO:0009636 GO:0009653 GO:0009791 GO:0009987 GO:0010015 GO:0010035 GO:0010101 GO:0010102 GO:0010311 GO:0015926 GO:0016020 GO:0016052 GO:0016787 GO:0016798 GO:0019752 GO:0022622 GO:0032501 GO:0032502 GO:0040034 GO:0042221 GO:0042493 GO:0042542 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044248 GO:0044262 GO:0044275 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046352 GO:0046677 GO:0048229 GO:0048364 GO:0048506 GO:0048509 GO:0048510 GO:0048527 GO:0048528 GO:0048646 GO:0048731 GO:0048856 GO:0050789 GO:0050793 GO:0050896 GO:0065007 GO:0071704 GO:0071944 GO:0080022 GO:0090599 GO:0090696 GO:0090697 GO:0090698 GO:0099402 GO:1901564 GO:1901575 GO:1901700 GO:1905392 GO:1905393

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Glyco_hydro_100

Protein Analysis

94

Amino Acids

10.84

Weight (kDa)

9.51

Isoelectric Point (pI)

57.86

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016415)

Species	Orthologous Gene IDs
malus_domestica	MD07G1066500.v1.1
prunus_persica	Prupe.1G058000_v2.0.a1 Prupe.2G191500_v2.0.a1 Prupe.4G206400_v2.0.a1 Prupe.5G024000_v2.0.a1 Prupe.6G006600_v2.0.a1 Prupe.6G072900_v2.0.a1 Prupe.6G291200_v2.0.a1 Prupe.6G314000_v2.0.a1 Prupe.6G314000_v2.0.a1 Prupe.6G314000_v2.0.a1 Prupe.6G314000_v2.0.a1
rosa_multiflora	Rmu_co8407209.1_g000001 Rmu_co8435583.1_g000001 Rmu_ssc0000460.1_g000009

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	194
AcoI	YGGCCR	1 cut(s)	92
AfaI	GTAC	1 cut(s)	149
AluBI	AGCT	1 cut(s)	61
AluI	AGCT	1 cut(s)	61
AlwI	GGATC	1 cut(s)	194
AoxI	GGCC	1 cut(s)	92
ApeKI	GCWGC	1 cut(s)	11
BalI	TGGCCA	1 cut(s)	94
BccI	CCATC	2 cut(s)	101, 211
BceAI	ACGGC	1 cut(s)	24
BfaI	CTAG	2 cut(s)	116, 194
BisI	GCNGC	1 cut(s)	12
BlsI	GCNGC	1 cut(s)	13
BmsI	GCATC	1 cut(s)	180
BsaBI	GATNNNNATC	1 cut(s)	268
Bse1I	ACTGG	1 cut(s)	231
Bse8I	GATNNNNATC	1 cut(s)	268
BseJI	GATNNNNATC	1 cut(s)	268
BseMII	CTCAG	1 cut(s)	57
BseNI	ACTGG	1 cut(s)	231
BshFI	GGCC	1 cut(s)	94
BslFI	GGGAC	1 cut(s)	42
BsmFI	GGGAC	1 cut(s)	42
BsnI	GGCC	1 cut(s)	94
Bsp143I	GATC	3 cut(s)	199, 219, 263
BspANI	GGCC	1 cut(s)	94
BspCNI	CTCAG	1 cut(s)	58
BspPI	GGATC	1 cut(s)	194
BsrI	ACTGG	1 cut(s)	231
BssMI	GATC	3 cut(s)	199, 219, 263
Bst6I	CTCTTC	1 cut(s)	225
BstC8I	GCNNGC	2 cut(s)	16, 63
BstDEI	CTNAG	1 cut(s)	66
BstKTI	GATC	3 cut(s)	202, 222, 266
BstMBI	GATC	3 cut(s)	199, 219, 263
BstMWI	GCNNNNNNNGC	1 cut(s)	247
BstX2I	RGATCY	1 cut(s)	199
BstYI	RGATCY	1 cut(s)	199
BsuRI	GGCC	1 cut(s)	94
BtsIMutI	CAGTG	1 cut(s)	224
Cac8I	GCNNGC	2 cut(s)	16, 63
Csp6I	GTAC	1 cut(s)	148
CviAII	CATG	1 cut(s)	156
CviJI	RGCY	4 cut(s)	11, 61, 94, 250
CviKI_1	RGCY	4 cut(s)	11, 61, 94, 250
CviQI	GTAC	1 cut(s)	148
DdeI	CTNAG	1 cut(s)	66
DpnI	GATC	3 cut(s)	201, 221, 265
DpnII	GATC	3 cut(s)	199, 219, 263
EaeI	YGGCCR	1 cut(s)	92
Eam1104I	CTCTTC	1 cut(s)	225
EarI	CTCTTC	1 cut(s)	225
Eco32I	GATATC	1 cut(s)	173
EcoRV	GATATC	1 cut(s)	173
FaeI	CATG	1 cut(s)	159
FaiI	YATR	4 cut(s)	105, 126, 157, 218
FaqI	GGGAC	1 cut(s)	42
FatI	CATG	1 cut(s)	155
Fnu4HI	GCNGC	1 cut(s)	12
Fsp4HI	GCNGC	1 cut(s)	12
FspBI	CTAG	2 cut(s)	116, 194
GluI	GCNGC	1 cut(s)	12
HaeIII	GGCC	1 cut(s)	94
Hin1II	CATG	1 cut(s)	159
HinfI	GANTC	2 cut(s)	70, 86
Hpy166II	GTNNAC	1 cut(s)	276
Hpy188III	TCNNGA	1 cut(s)	168
Hpy8I	GTNNAC	1 cut(s)	276
HpyCH4V	TGCA	3 cut(s)	18, 44, 182
HpyF10VI	GCNNNNNNNGC	1 cut(s)	247
HpyF3I	CTNAG	1 cut(s)	66
Hsp92II	CATG	1 cut(s)	159
Kzo9I	GATC	3 cut(s)	199, 219, 263
LpnPI	CCDG	8 cut(s)	28, 108, 122, 153, 161, 164, 212, 264
LweI	GCATC	1 cut(s)	180
MaeI	CTAG	2 cut(s)	116, 194
MalI	GATC	3 cut(s)	201, 221, 265
MboI	GATC	3 cut(s)	199, 219, 263
MboII	GAAGA	2 cut(s)	209, 242
MfeI	CAATTG	1 cut(s)	54
MflI	RGATCY	1 cut(s)	199
MlsI	TGGCCA	1 cut(s)	94
MluCI	AATT	3 cut(s)	39, 54, 255
MluNI	TGGCCA	1 cut(s)	94
MlyI	GAGTC	1 cut(s)	79
MnlI	CCTC	1 cut(s)	226
Mox20I	TGGCCA	1 cut(s)	94
MscI	TGGCCA	1 cut(s)	94
MseI	TTAA	1 cut(s)	21
MslI	CAYNNNNRTG	1 cut(s)	271
Msp20I	TGGCCA	1 cut(s)	94
MunI	CAATTG	1 cut(s)	54
MwoI	GCNNNNNNNGC	1 cut(s)	247
NdeII	GATC	3 cut(s)	199, 219, 263
NlaIII	CATG	1 cut(s)	159
PfeI	GAWTC	1 cut(s)	86
PflFI	GACNNNGTC	1 cut(s)	157
PkrI	GCNGC	1 cut(s)	13
PleI	GAGTC	1 cut(s)	78
PpsI	GAGTC	1 cut(s)	78
PsuI	RGATCY	1 cut(s)	199
PsyI	GACNNNGTC	1 cut(s)	157
RsaI	GTAC	1 cut(s)	149
RsaNI	GTAC	1 cut(s)	148
RseI	CAYNNNNRTG	1 cut(s)	271
SaqAI	TTAA	1 cut(s)	21
SatI	GCNGC	1 cut(s)	12
Sau3AI	GATC	3 cut(s)	199, 219, 263
SchI	GAGTC	1 cut(s)	79
SetI	ASST	1 cut(s)	63
SfaNI	GCATC	1 cut(s)	180
SmiMI	CAYNNNNRTG	1 cut(s)	271
Sse9I	AATT	3 cut(s)	39, 54, 255
SspI	AATATT	1 cut(s)	101
SspMI	CTAG	2 cut(s)	116, 194
TasI	AATT	3 cut(s)	39, 54, 255
TfiI	GAWTC	1 cut(s)	86
Tru1I	TTAA	1 cut(s)	21
Tru9I	TTAA	1 cut(s)	21
TscAI	CASTG	1 cut(s)	231
TseI	GCWGC	1 cut(s)	11
TspDTI	ATGAA	1 cut(s)	260
TspRI	CASTG	1 cut(s)	231
Tth111I	GACNNNGTC	1 cut(s)	157
XspI	CTAG	2 cut(s)	116, 194

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.