Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp04

Orthogroup ID

OG0011377

Physical Location & Seq

Genomic Coordinates Reverse (-)

17935257 .. 17941250

Gene Structure 5994 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.4G256000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1308 bp

ATGGCGGGAGCTTCTTCAGTGTATATGCATTTGAAGAGCAGAGTGAGCCTTTGTAATGCCACTGCTGCGGTCACTTCTTCTCCTAGTAGTAGTTCTGCAGAGGCCCAAATTGGGAACAGGGTTCAGCTCCCTGAGAAGACCCGAAACTCGCGGGTGCTGGTTCTGGGCGGAACGGGTCGGGTCGGAGGTTCCACTGCCATTGCCCTCTCCAAGCTCTGCCCCGACCTCCAAATTCTCGTTGGCGGTCGAAACAGGGAAAAAGGAGCTAATATGGTGGCTACACTTGGGGGAAACTCAGAGTTCTCTGAAGTAAATATTGACAATGTAAAATCATTGGAAGCAGCTCTGAAAGATGTGGATCTCGTAGTTCATGCTGCAGGGCCGTTCCAACAAGCAGAGAAGTGTACTGTATTGGAAGCTGCCTTACAGACAAAGACAGCCTATGTTGATGTTTGTGATGATACAGCCTACTCACTGCGTGCAAAATCTTTCAACAGTAGAGCGCTAGCTGCAAATGTTCCAGCAATAACAACTGGTGGAATTTATCCCGGAGTGAGCAATGAACTAGTTCGTGCGGCAAGAAGTGAAAGCAAAGGCAAACCAGAAAGGCTAAGATTCTACTACTACACAGCGGGAACTGGCGGGGCTGGTCCAACTATCTTAGCCACTAGTTTTTTGCTTCTCGGAGAGGAGGTTGTTGCATTTAATAAAGGAGAAAAGATCAAACTAAAGCCATATAGTGGAATGCTGACGATTGACTTTGGAAAAGGAATTGGAAAGAAAGATGTTTATCTGTTGAATTTGCCAGAGGTAAGAAGTACTCATGAGGTCCTAGGAGTACCTACTGTCAGTGCTCGATTTGGAACTTCACCCTTCTTTTGGAATTGGGGAATGGCAGCCATGACTAGTCTTCTTCCAGCAGAGCTGTTGAGAGACAGAAGCAAAGTCCAACAGATGGTTGACCTGTTTGACCCCGTAGTCCGACGAGTTGATAGTATTGCTGGAGAGCGTGTATCAATGAGGGTTGATTTGGAGTGCTCTGACGGGCGCAATACAGTTGGCATATTCAGTCACAAGAGACTCTCCGTATCAGTTGGAAATGCAACAGCTGCATTTGTTTTGGCAATTCTTGAGGGAAGCACAAAGCCTGGGGTTTGGTTTCCAGAGGAGACTGAAGGCATTGCAATCGAGGCAAGAGAACTCCTTCTCAAACGTGCTGCACAAGGAACATTCAATTTTGTAATGAACAAGCCATCATGGATGGTGGAAACAAATCCAAAAGAGTTAGGGTTGGGAATATACGTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Sacchrp_dh_NADP

Protein Analysis

436

Amino Acids

46.59

Weight (kDa)

9.04

Isoelectric Point (pI)

38.98

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011377)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G50450
fragaria_vesca	FvH4_3g28350 FvH4_3g28350 FvH4_3g28350 FvH4_3g28350
malus_domestica	MD11G1188300.v1.1
prunus_persica	Prupe.4G256000_v2.0.a1
pyrus_communis	pycom11g16520
rosa_chinensis	RchiOBHm_Chr5g0053381
rosa_laevigata	RLG00000034765
rosa_multiflora	Rmu_co8409909.1_g000001 Rmu_sc0007379.1_g000003
rosa_roxburghii	Rroxscaffold_1G00029110 Rroxscaffold_2G00125810 Rroxscaffold_7G00209420
rosa_rugosa	Rorug05G0267000
rosa_samantha	Rh5AG339700 Rh5CG376500 Rh5DG364100
rosa_wichuraiana	Rw5G032060

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	977
AccB7I	CCANNNNNTGG	2 cut(s)	740, 955
AccII	CGCG	1 cut(s)	151
AciI	CCGC	8 cut(s)	5, 68, 151, 168, 243, 575, 632, 642
AclWI	GGATC	1 cut(s)	366
AcsI	RAATTY	3 cut(s)	231, 540, 799
AcuI	CTGAAG	2 cut(s)	327, 1194
AdeI	CACNNNGTG	1 cut(s)	479
AfaI	GTAC	3 cut(s)	406, 820, 840
AfeI	AGCGCT	1 cut(s)	504
AfiI	CCNNNNNNNGG	4 cut(s)	111, 740, 879, 955
AflIII	ACRYGT	1 cut(s)	1302
AgsI	TTSAA	4 cut(s)	34, 493, 799, 1234
AhlI	ACTAGT	3 cut(s)	565, 668, 905
AjnI	CCWGG	1 cut(s)	1147
AluBI	AGCT	9 cut(s)	11, 127, 214, 266, 344, 419, 509, 925, 1109
AluI	AGCT	9 cut(s)	11, 127, 214, 266, 344, 419, 509, 925, 1109
Alw21I	GWGCWC	2 cut(s)	856, 1040
Alw26I	GTCTC	3 cut(s)	927, 1072, 1163
AlwI	GGATC	1 cut(s)	366
Aor51HI	AGCGCT	1 cut(s)	504
AoxI	GGCC	2 cut(s)	102, 380
ApeKI	GCWGC	8 cut(s)	65, 341, 374, 419, 509, 896, 1109, 1217
ApoI	RAATTY	3 cut(s)	231, 540, 799
Asp700I	GAANNNNTTC	2 cut(s)	567, 1203
AspA2I	CCTAGG	1 cut(s)	832
AspLEI	GCGC	2 cut(s)	505, 1050
AspS9I	GGNCC	4 cut(s)	103, 380, 650, 829
AsuC2I	CCSGG	1 cut(s)	549
AsuHPI	GGTGA	1 cut(s)	861
AsuNHI	GCTAGC	1 cut(s)	505
AvaII	GGWCC	2 cut(s)	650, 829
AvrII	CCTAGG	1 cut(s)	832
BarI	GAAGNNNNNNTAC	2 cut(s)	408, 440
BbsI	GAAGAC	2 cut(s)	143, 902
Bbv12I	GWGCWC	2 cut(s)	856, 1040
BbvI	GCAGC	8 cut(s)	52, 353, 361, 406, 496, 908, 1096, 1204
BccI	CCATC	3 cut(s)	949, 1255, 1261
BceAI	ACGGC	1 cut(s)	367
BcgI	CGANNNNNNTGC	2 cut(s)	1168, 1202
BciT130I	CCWGG	1 cut(s)	1149
BcnI	CCSGG	1 cut(s)	549
BcoDI	GTCTC	3 cut(s)	927, 1072, 1163
BcuI	ACTAGT	3 cut(s)	565, 668, 905
BfaI	CTAG	6 cut(s)	84, 506, 566, 669, 833, 906
BfmI	CTRYAG	2 cut(s)	96, 375
BfoI	RGCGCY	1 cut(s)	506
BisI	GCNGC	9 cut(s)	66, 342, 375, 420, 510, 576, 897, 1110, 1218
BlnI	CCTAGG	1 cut(s)	832
BlsI	GCNGC	9 cut(s)	67, 343, 376, 421, 511, 577, 898, 1111, 1219
BmcAI	AGTACT	1 cut(s)	820
Bme1390I	CCNGG	2 cut(s)	549, 1149
Bme18I	GGWCC	2 cut(s)	650, 829
BmgT120I	GGNCC	4 cut(s)	103, 380, 650, 829
BmiI	GGNNCC	1 cut(s)	190
BmrFI	CCNGG	2 cut(s)	549, 1149
BmtI	GCTAGC	1 cut(s)	509
BpiI	GAAGAC	2 cut(s)	143, 902
BpmI	CTGGAG	1 cut(s)	1023
BpuEI	CTTGAG	1 cut(s)	1151
BpuMI	CCSGG	1 cut(s)	549
BsaAI	YACGTR	1 cut(s)	1303
BsaBI	GATNNNNATC	2 cut(s)	357, 789
BsaJI	CCNNGG	2 cut(s)	832, 1148
BsaXI	ACNNNNNCTCC	6 cut(s)	64, 94, 678, 708, 996, 1026
Bsc4I	CCNNNNNNNGG	4 cut(s)	111, 740, 879, 955
Bse1I	ACTGG	2 cut(s)	538, 643
Bse3DI	GCAATG	3 cut(s)	198, 565, 1179
Bse8I	GATNNNNATC	2 cut(s)	357, 789
BseBI	CCWGG	1 cut(s)	1149
BseDI	CCNNGG	2 cut(s)	832, 1148
BseGI	GGATG	1 cut(s)	1266
BseJI	GATNNNNATC	2 cut(s)	357, 789
BseLI	CCNNNNNNNGG	4 cut(s)	111, 740, 879, 955
BseMI	GCAATG	3 cut(s)	198, 565, 1179
BseMII	CTCAG	2 cut(s)	123, 309
BseNI	ACTGG	2 cut(s)	538, 643
BseRI	GAGGAG	2 cut(s)	704, 1181
BseXI	GCAGC	8 cut(s)	52, 353, 361, 406, 496, 908, 1096, 1204
BsgI	GTGCAG	1 cut(s)	1203
Bsh1236I	CGCG	1 cut(s)	151
Bsh1285I	CGRYCG	1 cut(s)	247
BshFI	GGCC	2 cut(s)	104, 382
BsiEI	CGRYCG	1 cut(s)	247
BsiHKAI	GWGCWC	2 cut(s)	856, 1040
BsiSI	CCGG	1 cut(s)	549
BslI	CCNNNNNNNGG	4 cut(s)	111, 740, 879, 955
BsmAI	GTCTC	3 cut(s)	927, 1072, 1163
BsmI	GAATGC	1 cut(s)	750
BsnI	GGCC	2 cut(s)	104, 382
Bsp1286I	GDGCHC	2 cut(s)	856, 1040
Bsp143I	GATC	2 cut(s)	358, 720
BspACI	CCGC	8 cut(s)	5, 68, 151, 168, 243, 575, 632, 642
BspANI	GGCC	2 cut(s)	104, 382
BspCNI	CTCAG	2 cut(s)	124, 308
BspFNI	CGCG	1 cut(s)	151
BspHI	TCATGA	1 cut(s)	823
BspLI	GGNNCC	1 cut(s)	190
BspMAI	CTGCAG	2 cut(s)	100, 379
BspOI	GCTAGC	1 cut(s)	509
BspPI	GGATC	1 cut(s)	366
BspQI	GCTCTTC	1 cut(s)	29
BsrDI	GCAATG	3 cut(s)	198, 565, 1179
BsrI	ACTGG	2 cut(s)	538, 643
BssECI	CCNNGG	2 cut(s)	832, 1148
BssMI	GATC	2 cut(s)	358, 720
BssT1I	CCWWGG	1 cut(s)	832
Bst2UI	CCWGG	1 cut(s)	1149
Bst4CI	ACNGT	4 cut(s)	409, 497, 847, 1057
Bst6I	CTCTTC	1 cut(s)	29
BstAPI	GCANNNNNTGC	1 cut(s)	1109
BstBAI	YACGTR	1 cut(s)	1303
BstC8I	GCNNGC	2 cut(s)	480, 507
BstDEI	CTNAG	4 cut(s)	132, 295, 611, 661
BstF5I	GGATG	1 cut(s)	1266
BstFNI	CGCG	1 cut(s)	151
BstH2I	RGCGCY	1 cut(s)	506
BstHHI	GCGC	2 cut(s)	505, 1050
BstKTI	GATC	2 cut(s)	361, 723
BstMAI	GTCTC	3 cut(s)	927, 1072, 1163
BstMBI	GATC	2 cut(s)	358, 720
BstMCI	CGRYCG	1 cut(s)	247
BstMWI	GCNNNNNNNGC	5 cut(s)	45, 65, 509, 1109, 1190
BstNI	CCWGG	1 cut(s)	1149
BstSCI	CCNGG	2 cut(s)	547, 1147
BstSFI	CTRYAG	2 cut(s)	96, 375
BstUI	CGCG	1 cut(s)	151
BstV1I	GCAGC	8 cut(s)	52, 353, 361, 406, 496, 908, 1096, 1204
BstV2I	GAAGAC	2 cut(s)	143, 902
BstX2I	RGATCY	1 cut(s)	358
BstYI	RGATCY	1 cut(s)	358
BsuRI	GGCC	2 cut(s)	104, 382
BtsCI	GGATG	1 cut(s)	1266
BtsI	GCAGTG	3 cut(s)	60, 192, 473
BtsIMutI	CAGTG	5 cut(s)	24, 60, 192, 473, 856
Cac8I	GCNNGC	2 cut(s)	480, 507
CciI	TCATGA	1 cut(s)	823
CfoI	GCGC	2 cut(s)	505, 1050
Cfr13I	GGNCC	4 cut(s)	103, 380, 650, 829
Csp6I	GTAC	3 cut(s)	405, 819, 839
CspCI	CAANNNNNGTGG	2 cut(s)	181, 216
CviAII	CATG	4 cut(s)	371, 824, 901, 1257
CviQI	GTAC	3 cut(s)	405, 819, 839
DdeI	CTNAG	4 cut(s)	132, 295, 611, 661
DpnI	GATC	2 cut(s)	360, 722
DpnII	GATC	2 cut(s)	358, 720
DraIII	CACNNNGTG	1 cut(s)	479
DrdI	GACNNNNNNGTC	1 cut(s)	977
DseDI	GACNNNNNNGTC	1 cut(s)	977
Eam1104I	CTCTTC	1 cut(s)	29
EarI	CTCTTC	1 cut(s)	29
EciI	GGCGGA	1 cut(s)	183
Eco130I	CCWWGG	1 cut(s)	832
Eco47I	GGWCC	2 cut(s)	650, 829
Eco47III	AGCGCT	1 cut(s)	504
Eco57I	CTGAAG	2 cut(s)	327, 1194
EcoO109I	RGGNCCY	1 cut(s)	829
EcoRII	CCWGG	1 cut(s)	1147
EcoT14I	CCWWGG	1 cut(s)	832
EcoT22I	ATGCAT	1 cut(s)	30
ErhI	CCWWGG	1 cut(s)	832
FaeI	CATG	4 cut(s)	374, 827, 904, 1260
FatI	CATG	4 cut(s)	370, 823, 900, 1256
FauI	CCCGC	3 cut(s)	144, 625, 635
Fnu4HI	GCNGC	9 cut(s)	66, 342, 375, 420, 510, 576, 897, 1110, 1218
FokI	GGATG	1 cut(s)	1273
Fsp4HI	GCNGC	9 cut(s)	66, 342, 375, 420, 510, 576, 897, 1110, 1218
FspBI	CTAG	6 cut(s)	84, 506, 566, 669, 833, 906
GlaI	GCGC	2 cut(s)	504, 1049
GluI	GCNGC	9 cut(s)	66, 342, 375, 420, 510, 576, 897, 1110, 1218
GsuI	CTGGAG	1 cut(s)	1023
HaeII	RGCGCY	1 cut(s)	506
HaeIII	GGCC	2 cut(s)	104, 382
HapII	CCGG	1 cut(s)	549
HhaI	GCGC	2 cut(s)	505, 1050
Hin1II	CATG	4 cut(s)	374, 827, 904, 1260
Hin6I	GCGC	2 cut(s)	503, 1048
HinP1I	GCGC	2 cut(s)	503, 1048
HincII	GTYRAC	1 cut(s)	961
HindII	GTYRAC	1 cut(s)	961
HinfI	GANTC	2 cut(s)	615, 1080
HpaII	CCGG	1 cut(s)	549
HphI	GGTGA	1 cut(s)	861
Hpy166II	GTNNAC	2 cut(s)	405, 961
Hpy188I	TCNGA	7 cut(s)	185, 298, 307, 348, 686, 983, 1042
Hpy188III	TCNNGA	3 cut(s)	824, 1130, 1163
Hpy8I	GTNNAC	2 cut(s)	405, 961
Hpy99I	CGWCG	1 cut(s)	987
HpyAV	CCTTC	3 cut(s)	883, 1169, 1214
HpyCH4III	ACNGT	4 cut(s)	409, 497, 847, 1057
HpyCH4IV	ACGT	2 cut(s)	1213, 1302
HpyF10VI	GCNNNNNNNGC	5 cut(s)	45, 65, 509, 1109, 1190
HpyF3I	CTNAG	4 cut(s)	132, 295, 611, 661
HpySE526I	ACGT	2 cut(s)	1213, 1302
Hsp92II	CATG	4 cut(s)	374, 827, 904, 1260
HspAI	GCGC	2 cut(s)	503, 1048
Kzo9I	GATC	2 cut(s)	358, 720
LguI	GCTCTTC	1 cut(s)	29
LmnI	GCTCC	3 cut(s)	8, 132, 263
Lsp1109I	GCAGC	8 cut(s)	52, 353, 361, 406, 496, 908, 1096, 1204
MaeI	CTAG	6 cut(s)	84, 506, 566, 669, 833, 906
MaeII	ACGT	2 cut(s)	1213, 1302
MaeIII	GTNAC	2 cut(s)	70, 1070
MalI	GATC	2 cut(s)	360, 722
MboI	GATC	2 cut(s)	358, 720
MboII	GAAGA	6 cut(s)	6, 46, 69, 148, 902, 905
MflI	RGATCY	1 cut(s)	358
MhlI	GDGCHC	2 cut(s)	856, 1040
MluCI	AATT	8 cut(s)	108, 231, 540, 771, 799, 883, 1125, 1234
MlyI	GAGTC	1 cut(s)	1074
MmeI	TCCRAC	6 cut(s)	163, 412, 677, 973, 1006, 1075
Mph1103I	ATGCAT	1 cut(s)	30
MroXI	GAANNNNTTC	2 cut(s)	567, 1203
MseI	TTAA	1 cut(s)	705
MspA1I	CMGCKG	2 cut(s)	632, 1109
MspI	CCGG	1 cut(s)	549
MspR9I	CCNGG	2 cut(s)	549, 1149
Mva1269I	GAATGC	1 cut(s)	750
MvaI	CCWGG	1 cut(s)	1149
MvnI	CGCG	1 cut(s)	151
MwoI	GCNNNNNNNGC	5 cut(s)	45, 65, 509, 1109, 1190
NciI	CCSGG	1 cut(s)	549
NdeII	GATC	2 cut(s)	358, 720
NheI	GCTAGC	1 cut(s)	505
NlaIII	CATG	4 cut(s)	374, 827, 904, 1260
NlaIV	GGNNCC	1 cut(s)	190
NmuCI	GTSAC	2 cut(s)	70, 1070
NsiI	ATGCAT	1 cut(s)	30
PagI	TCATGA	1 cut(s)	823
PciSI	GCTCTTC	1 cut(s)	29
PctI	GAATGC	1 cut(s)	750
PdmI	GAANNNNTTC	2 cut(s)	567, 1203
PfeI	GAWTC	1 cut(s)	615
PflMI	CCANNNNNTGG	2 cut(s)	740, 955
PfoI	TCCNGGA	1 cut(s)	547
PkrI	GCNGC	9 cut(s)	67, 343, 376, 421, 511, 577, 898, 1111, 1219
PleI	GAGTC	1 cut(s)	1074
PpsI	GAGTC	1 cut(s)	1074
Ppu21I	YACGTR	1 cut(s)	1303
PpuMI	RGGWCCY	1 cut(s)	829
Psp5II	RGGWCCY	1 cut(s)	829
Psp6I	CCWGG	1 cut(s)	1147
PspGI	CCWGG	1 cut(s)	1147
PspN4I	GGNNCC	1 cut(s)	190
PspPI	GGNCC	4 cut(s)	103, 380, 650, 829
PspPPI	RGGWCCY	1 cut(s)	829
PstI	CTGCAG	2 cut(s)	100, 379
PsuI	RGATCY	1 cut(s)	358
PvuII	CAGCTG	1 cut(s)	1109
RsaI	GTAC	3 cut(s)	406, 820, 840
RsaNI	GTAC	3 cut(s)	405, 819, 839
SapI	GCTCTTC	1 cut(s)	29
SaqAI	TTAA	1 cut(s)	705
SatI	GCNGC	9 cut(s)	66, 342, 375, 420, 510, 576, 897, 1110, 1218
Sau3AI	GATC	2 cut(s)	358, 720
Sau96I	GGNCC	4 cut(s)	103, 380, 650, 829
ScaI	AGTACT	1 cut(s)	820
SchI	GAGTC	1 cut(s)	1074
ScrFI	CCNGG	2 cut(s)	549, 1149
SduI	GDGCHC	2 cut(s)	856, 1040
SfcI	CTRYAG	2 cut(s)	96, 375
SinI	GGWCC	2 cut(s)	650, 829
SmlI	CTYRAG	1 cut(s)	1130
SmoI	CTYRAG	1 cut(s)	1130
SpeI	ACTAGT	3 cut(s)	565, 668, 905
Sse9I	AATT	8 cut(s)	108, 231, 540, 771, 799, 883, 1125, 1234
SsiI	CCGC	8 cut(s)	5, 68, 151, 168, 243, 575, 632, 642
SspI	AATATT	1 cut(s)	316
SspMI	CTAG	6 cut(s)	84, 506, 566, 669, 833, 906
StyD4I	CCNGG	2 cut(s)	547, 1147
StyI	CCWWGG	1 cut(s)	832
TaaI	ACNGT	4 cut(s)	409, 497, 847, 1057
TaiI	ACGT	2 cut(s)	1216, 1305
TaqI	TCGA	3 cut(s)	247, 856, 1188
TasI	AATT	8 cut(s)	108, 231, 540, 771, 799, 883, 1125, 1234
TatI	WGTACW	2 cut(s)	404, 818
TauI	GCSGC	1 cut(s)	578
TfiI	GAWTC	1 cut(s)	615
Tru1I	TTAA	1 cut(s)	705
Tru9I	TTAA	1 cut(s)	705
TscAI	CASTG	5 cut(s)	24, 67, 199, 480, 856
TseFI	GTSAC	2 cut(s)	70, 1070
TseI	GCWGC	8 cut(s)	65, 341, 374, 419, 509, 896, 1109, 1217
Tsp45I	GTSAC	2 cut(s)	70, 1070
TspDTI	ATGAA	3 cut(s)	359, 576, 1259
TspGWI	ACGGA	1 cut(s)	1075
TspRI	CASTG	5 cut(s)	24, 67, 199, 480, 856
Van91I	CCANNNNNTGG	2 cut(s)	740, 955
VpaK11BI	GGWCC	2 cut(s)	650, 829
XapI	RAATTY	3 cut(s)	231, 540, 799
XcmI	CCANNNNNNNNNTGG	1 cut(s)	236
XmaJI	CCTAGG	1 cut(s)	832
XmnI	GAANNNNTTC	2 cut(s)	567, 1203
XspI	CTAG	6 cut(s)	84, 506, 566, 669, 833, 906
ZrmI	AGTACT	1 cut(s)	820
Zsp2I	ATGCAT	1 cut(s)	30

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.