Rmu_co8409909.1_g000001

Saccharopine dehydrogenase NADP binding domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8409909.1
OG0011377
Physical Location & Seq
Forward (+)
1 .. 872
872 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8409909.1_g000001.1.cds

Sequence Viewer

Length: 337 bp
ggagaaaggcgctgaaatgctgactactcttggggcgaactcggagttctgtgaagtcgatattaacaatgaaaaatcattggaagcagctctggaagatgcggatcttgtagttcatgctgctggcccattccaacaggcagagaagtgcactgtattggaagctgccttaaagaccaagacagcctatgttgatgtttgtgatgatacagcctatgcattccgtgcaaaatctttccacgatagagcagttgcagctaatgttccagccataacaactggtggaatatatccaggagtgagcaatggtctatcttcagcccatcttgttttgtaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Sacchrp_dh_NADP

Protein Analysis

111

Amino Acids

11.66

Weight (kDa)

4.63

Isoelectric Point (pI)

18.87

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 102
AclWI GGATC 1 cut(s) 112
AcuI CTGAAG 1 cut(s) 301
AjnI CCWGG 1 cut(s) 293
AluBI AGCT 3 cut(s) 90, 165, 258
AluI AGCT 3 cut(s) 90, 165, 258
Alw21I GWGCWC 1 cut(s) 153
Alw44I GTGCAC 1 cut(s) 149
AlwI GGATC 1 cut(s) 112
AoxI GGCC 1 cut(s) 125
ApaLI GTGCAC 1 cut(s) 149
ApeKI GCWGC 4 cut(s) 87, 120, 165, 255
AspLEI GCGC 1 cut(s) 12
AspS9I GGNCC 1 cut(s) 126
BaeGI GKGCMC 1 cut(s) 153
Bbv12I GWGCWC 1 cut(s) 153
BbvI GCAGC 4 cut(s) 99, 107, 152, 267
BccI CCATC 1 cut(s) 331
BciT130I CCWGG 1 cut(s) 295
BfoI RGCGCY 1 cut(s) 13
BisI GCNGC 4 cut(s) 88, 121, 166, 256
BlsI GCNGC 4 cut(s) 89, 122, 167, 257
Bme1390I CCNGG 1 cut(s) 295
BmgT120I GGNCC 1 cut(s) 126
BmrFI CCNGG 1 cut(s) 295
BmsI GCATC 1 cut(s) 89
BsaBI GATNNNNATC 1 cut(s) 103
Bse1I ACTGG 1 cut(s) 284
Bse3DI GCAATG 1 cut(s) 311
Bse8I GATNNNNATC 1 cut(s) 103
BseBI CCWGG 1 cut(s) 295
BseJI GATNNNNATC 1 cut(s) 103
BseMI GCAATG 1 cut(s) 311
BseNI ACTGG 1 cut(s) 284
BseSI GKGCMC 1 cut(s) 153
BseXI GCAGC 4 cut(s) 99, 107, 152, 267
BshFI GGCC 1 cut(s) 127
BsiHKAI GWGCWC 1 cut(s) 153
BsmI GAATGC 1 cut(s) 219
BsnI GGCC 1 cut(s) 127
Bsp1286I GDGCHC 1 cut(s) 153
Bsp143I GATC 1 cut(s) 104
BspACI CCGC 1 cut(s) 102
BspANI GGCC 1 cut(s) 127
BspPI GGATC 1 cut(s) 112
BsrDI GCAATG 1 cut(s) 311
BsrI ACTGG 1 cut(s) 284
BssMI GATC 1 cut(s) 104
Bst2UI CCWGG 1 cut(s) 295
Bst4CI ACNGT 1 cut(s) 155
BstAPI GCANNNNNTGC 1 cut(s) 225
BstC8I GCNNGC 1 cut(s) 125
BstH2I RGCGCY 1 cut(s) 13
BstHHI GCGC 1 cut(s) 12
BstKTI GATC 1 cut(s) 107
BstMBI GATC 1 cut(s) 104
BstMWI GCNNNNNNNGC 2 cut(s) 225, 255
BstNI CCWGG 1 cut(s) 295
BstSCI CCNGG 1 cut(s) 293
BstSLI GKGCMC 1 cut(s) 153
BstV1I GCAGC 4 cut(s) 99, 107, 152, 267
BstX2I RGATCY 1 cut(s) 104
BstYI RGATCY 1 cut(s) 104
BsuRI GGCC 1 cut(s) 127
BtsIMutI CAGTG 1 cut(s) 151
Cac8I GCNNGC 1 cut(s) 125
CfoI GCGC 1 cut(s) 12
Cfr13I GGNCC 1 cut(s) 126
CviAII CATG 1 cut(s) 117
CviJI RGCY 8 cut(s) 90, 127, 165, 186, 213, 258, 270, 321
CviKI_1 RGCY 8 cut(s) 90, 127, 165, 186, 213, 258, 270, 321
DpnI GATC 1 cut(s) 106
DpnII GATC 1 cut(s) 104
Eco57I CTGAAG 1 cut(s) 301
EcoRII CCWGG 1 cut(s) 293
EcoT22I ATGCAT 1 cut(s) 221
FaeI CATG 1 cut(s) 120
FaiI YATR 5 cut(s) 118, 190, 217, 273, 290
FatI CATG 1 cut(s) 116
Fnu4HI GCNGC 4 cut(s) 88, 121, 166, 256
Fsp4HI GCNGC 4 cut(s) 88, 121, 166, 256
GlaI GCGC 1 cut(s) 11
GluI GCNGC 4 cut(s) 88, 121, 166, 256
HaeII RGCGCY 1 cut(s) 13
HaeIII GGCC 1 cut(s) 127
HhaI GCGC 1 cut(s) 12
Hin1II CATG 1 cut(s) 120
Hin6I GCGC 1 cut(s) 10
HinP1I GCGC 1 cut(s) 10
Hpy166II GTNNAC 1 cut(s) 151
Hpy188I TCNGA 1 cut(s) 44
Hpy188III TCNNGA 1 cut(s) 93
Hpy8I GTNNAC 1 cut(s) 151
HpyCH4III ACNGT 1 cut(s) 155
HpyCH4V TGCA 4 cut(s) 151, 219, 228, 255
HpyF10VI GCNNNNNNNGC 2 cut(s) 225, 255
Hsp92II CATG 1 cut(s) 120
HspAI GCGC 1 cut(s) 10
Kzo9I GATC 1 cut(s) 104
LpnPI CCDG 7 cut(s) 78, 109, 123, 265, 280, 280, 307
Lsp1109I GCAGC 4 cut(s) 99, 107, 152, 267
LweI GCATC 1 cut(s) 89
MalI GATC 1 cut(s) 106
MboI GATC 1 cut(s) 104
MboII GAAGA 2 cut(s) 108, 307
MflI RGATCY 1 cut(s) 104
MhlI GDGCHC 1 cut(s) 153
MmeI TCCRAC 1 cut(s) 158
Mph1103I ATGCAT 1 cut(s) 221
MseI TTAA 2 cut(s) 64, 171
MspR9I CCNGG 1 cut(s) 295
Mva1269I GAATGC 1 cut(s) 219
MvaI CCWGG 1 cut(s) 295
MwoI GCNNNNNNNGC 2 cut(s) 225, 255
NdeII GATC 1 cut(s) 104
NlaIII CATG 1 cut(s) 120
NsiI ATGCAT 1 cut(s) 221
PctI GAATGC 1 cut(s) 219
PfoI TCCNGGA 1 cut(s) 293
PkrI GCNGC 4 cut(s) 89, 122, 167, 257
Psp6I CCWGG 1 cut(s) 293
PspGI CCWGG 1 cut(s) 293
PspPI GGNCC 1 cut(s) 126
PsuI RGATCY 1 cut(s) 104
SaqAI TTAA 2 cut(s) 64, 171
SatI GCNGC 4 cut(s) 88, 121, 166, 256
Sau3AI GATC 1 cut(s) 104
Sau96I GGNCC 1 cut(s) 126
ScrFI CCNGG 1 cut(s) 295
SduI GDGCHC 1 cut(s) 153
SetI ASST 3 cut(s) 92, 167, 260
SfaNI GCATC 1 cut(s) 89
SsiI CCGC 1 cut(s) 102
StyD4I CCNGG 1 cut(s) 293
TaaI ACNGT 1 cut(s) 155
TaqI TCGA 1 cut(s) 58
Tru1I TTAA 2 cut(s) 64, 171
Tru9I TTAA 2 cut(s) 64, 171
TscAI CASTG 1 cut(s) 158
TseI GCWGC 4 cut(s) 87, 120, 165, 255
TspDTI ATGAA 2 cut(s) 85, 105
TspGWI ACGGA 1 cut(s) 213
TspRI CASTG 1 cut(s) 158
VneI GTGCAC 1 cut(s) 149
Zsp2I ATGCAT 1 cut(s) 221
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.