Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0011377

Physical Location & Seq

Genomic Coordinates Reverse (-)

59659028 .. 59661419

Gene Structure 2392 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00209420.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 618 bp

ATGGAGGAGAGTCCCCGTATGTGCCAAGGTGGCCCTTTTCCATTTGTAGGCAAATCTCTAGTGCTGGACCTGCCTCACCTCGAACACCATAACAAAAAGTTACCGTTGACCTCTTACCGTGGCTCCTTCCGCACTAGGGTAGTAGTTTATCTTATGTCCTTGGAGGAAAACCAAGAAGATATCAGCGAAATCCAGGAGTTGAAATTGCTCGCAGAGCTCCCTCGTCAACCAAATGACCGTCATTTCTTCCATCTAAGGGGAAACAATGTCCGCCTTTGCTCGGTGGAACCGGTCGGGTCGGAGGATCCGCTACTATTACCCTCTCCAACCTCTCGCCCCGACCTCCAAATTATCGTCGCCGGCCGGAACAGGGAGAAAGGCGCCGAAATGCCGACTACTCTTGGGGCAAACTCGGAGTTCTGCGAAGTCGATATTAACAATGAAAAATCATTGGAAGTCGCCTTAAAGACCAAGACGACCTACGTTGATGTTTGTGATGATGCGACCTATGCATTCCGTACGAAATCTTTCCACGATAGAGCAGTTGCAGCTAATGTTCCAGCCATAACAACTGGTGGAATATATCCAGGAGTGAGCAATGTGATGGCTGCGAACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Sacchrp_dh_NADP

Protein Analysis

205

Amino Acids

22.79

Weight (kDa)

5.7

Isoelectric Point (pI)

43.34

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011377)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G50450
fragaria_vesca	FvH4_3g28350 FvH4_3g28350 FvH4_3g28350 FvH4_3g28350
malus_domestica	MD11G1188300.v1.1
prunus_persica	Prupe.4G256000_v2.0.a1
pyrus_communis	pycom11g16520
rosa_chinensis	RchiOBHm_Chr5g0053381
rosa_laevigata	RLG00000034765
rosa_multiflora	Rmu_co8409909.1_g000001 Rmu_sc0007379.1_g000003
rosa_roxburghii	Rroxscaffold_1G00029110 Rroxscaffold_2G00125810 Rroxscaffold_7G00209420
rosa_rugosa	Rorug05G0267000
rosa_samantha	Rh5AG339700 Rh5CG376500 Rh5DG364100
rosa_wichuraiana	Rw5G032060

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	78
AccB1I	GGYRCC	1 cut(s)	380
AciI	CCGC	3 cut(s)	130, 271, 308
AclWI	GGATC	2 cut(s)	299, 312
AcoI	YGGCCR	1 cut(s)	361
AcyI	GRCGYC	1 cut(s)	381
AfaI	GTAC	1 cut(s)	520
AfiI	CCNNNNNNNGG	5 cut(s)	47, 136, 256, 280, 370
AgeI	ACCGGT	1 cut(s)	289
AgsI	TTSAA	1 cut(s)	202
AjnI	CCWGG	2 cut(s)	192, 586
AluBI	AGCT	2 cut(s)	217, 551
AluI	AGCT	2 cut(s)	217, 551
Alw21I	GWGCWC	1 cut(s)	219
AlwI	GGATC	2 cut(s)	299, 312
AoxI	GGCC	2 cut(s)	31, 361
ApeKI	GCWGC	2 cut(s)	548, 608
AsiGI	ACCGGT	1 cut(s)	289
Asp700I	GAANNNNTTC	1 cut(s)	527
AspLEI	GCGC	1 cut(s)	383
AspS9I	GGNCC	2 cut(s)	32, 67
AsuHPI	GGTGA	1 cut(s)	68
AvaII	GGWCC	1 cut(s)	67
BamHI	GGATCC	1 cut(s)	304
BanI	GGYRCC	1 cut(s)	380
BanII	GRGCYC	1 cut(s)	219
Bbv12I	GWGCWC	1 cut(s)	219
BbvI	GCAGC	2 cut(s)	560, 595
BccI	CCATC	2 cut(s)	258, 598
BciT130I	CCWGG	2 cut(s)	194, 588
BfaI	CTAG	3 cut(s)	59, 135, 616
BfoI	RGCGCY	1 cut(s)	384
BfuAI	ACCTGC	1 cut(s)	78
BglI	GCCNNNNNGGC	1 cut(s)	30
BisI	GCNGC	2 cut(s)	549, 609
BlsI	GCNGC	2 cut(s)	550, 610
Bme1390I	CCNGG	2 cut(s)	194, 588
Bme18I	GGWCC	1 cut(s)	67
BmgT120I	GGNCC	2 cut(s)	32, 67
BmiI	GGNNCC	4 cut(s)	124, 288, 306, 382
BmrFI	CCNGG	2 cut(s)	194, 588
BmsI	GCATC	1 cut(s)	490
BsaHI	GRCGYC	1 cut(s)	381
BsaJI	CCNNGG	3 cut(s)	25, 118, 159
BsaWI	WCCGGW	1 cut(s)	289
BsaXI	ACNNNNNCTCC	2 cut(s)	107, 137
Bsc4I	CCNNNNNNNGG	5 cut(s)	47, 136, 256, 280, 370
Bse118I	RCCGGY	2 cut(s)	289, 359
Bse1I	ACTGG	1 cut(s)	577
Bse3DI	GCAATG	1 cut(s)	604
BseBI	CCWGG	2 cut(s)	194, 588
BseDI	CCNNGG	3 cut(s)	25, 118, 159
BseLI	CCNNNNNNNGG	5 cut(s)	47, 136, 256, 280, 370
BseMI	GCAATG	1 cut(s)	604
BseNI	ACTGG	1 cut(s)	577
BseRI	GAGGAG	1 cut(s)	20
BseX3I	CGGCCG	1 cut(s)	361
BseXI	GCAGC	2 cut(s)	560, 595
Bsh1285I	CGRYCG	2 cut(s)	294, 364
BshFI	GGCC	2 cut(s)	33, 363
BshNI	GGYRCC	1 cut(s)	380
BshTI	ACCGGT	1 cut(s)	289
BsiEI	CGRYCG	2 cut(s)	294, 364
BsiHKAI	GWGCWC	1 cut(s)	219
BsiSI	CCGG	3 cut(s)	290, 360, 364
BsiWI	CGTACG	1 cut(s)	518
BslI	CCNNNNNNNGG	5 cut(s)	47, 136, 256, 280, 370
BsmI	GAATGC	1 cut(s)	512
BsnI	GGCC	2 cut(s)	33, 363
Bsp1286I	GDGCHC	1 cut(s)	219
Bsp143I	GATC	1 cut(s)	304
BspACI	CCGC	3 cut(s)	130, 271, 308
BspANI	GGCC	2 cut(s)	33, 363
BspLI	GGNNCC	4 cut(s)	124, 288, 306, 382
BspMI	ACCTGC	1 cut(s)	78
BspPI	GGATC	2 cut(s)	299, 312
BspT107I	GGYRCC	1 cut(s)	380
BsrDI	GCAATG	1 cut(s)	604
BsrFI	RCCGGY	2 cut(s)	289, 359
BsrI	ACTGG	1 cut(s)	577
BssAI	RCCGGY	2 cut(s)	289, 359
BssECI	CCNNGG	3 cut(s)	25, 118, 159
BssMI	GATC	1 cut(s)	304
BssNI	GRCGYC	1 cut(s)	381
BssT1I	CCWWGG	2 cut(s)	25, 159
Bst2UI	CCWGG	2 cut(s)	194, 588
Bst4CI	ACNGT	3 cut(s)	105, 119, 239
BstACI	GRCGYC	1 cut(s)	381
BstC8I	GCNNGC	2 cut(s)	210, 361
BstDEI	CTNAG	1 cut(s)	254
BstDSI	CCRYGG	1 cut(s)	118
BstH2I	RGCGCY	1 cut(s)	384
BstHHI	GCGC	1 cut(s)	383
BstKTI	GATC	1 cut(s)	307
BstMBI	GATC	1 cut(s)	304
BstMCI	CGRYCG	2 cut(s)	294, 364
BstMWI	GCNNNNNNNGC	6 cut(s)	30, 70, 129, 214, 509, 548
BstNI	CCWGG	2 cut(s)	194, 588
BstSCI	CCNGG	2 cut(s)	192, 586
BstV1I	GCAGC	2 cut(s)	560, 595
BstX2I	RGATCY	1 cut(s)	304
BstYI	RGATCY	1 cut(s)	304
BstZI	CGGCCG	1 cut(s)	361
BsuRI	GGCC	2 cut(s)	33, 363
BtgI	CCRYGG	1 cut(s)	118
BveI	ACCTGC	1 cut(s)	78
Cac8I	GCNNGC	2 cut(s)	210, 361
CfoI	GCGC	1 cut(s)	383
Cfr10I	RCCGGY	2 cut(s)	289, 359
Cfr13I	GGNCC	2 cut(s)	32, 67
Csp6I	GTAC	1 cut(s)	519
CspAI	ACCGGT	1 cut(s)	289
CviJI	RGCY	7 cut(s)	33, 123, 217, 363, 551, 563, 608
CviKI_1	RGCY	7 cut(s)	33, 123, 217, 363, 551, 563, 608
CviQI	GTAC	1 cut(s)	519
DdeI	CTNAG	1 cut(s)	254
DinI	GGCGCC	1 cut(s)	382
DpnI	GATC	1 cut(s)	306
DpnII	GATC	1 cut(s)	304
EaeI	YGGCCR	1 cut(s)	361
EagI	CGGCCG	1 cut(s)	361
EciI	GGCGGA	1 cut(s)	260
Ecl136II	GAGCTC	1 cut(s)	217
EclXI	CGGCCG	1 cut(s)	361
Eco130I	CCWWGG	2 cut(s)	25, 159
Eco24I	GRGCYC	1 cut(s)	219
Eco32I	GATATC	1 cut(s)	181
Eco47I	GGWCC	1 cut(s)	67
Eco52I	CGGCCG	1 cut(s)	361
Eco53kI	GAGCTC	1 cut(s)	217
EcoICRI	GAGCTC	1 cut(s)	217
EcoRII	CCWGG	2 cut(s)	192, 586
EcoRV	GATATC	1 cut(s)	181
EcoT14I	CCWWGG	2 cut(s)	25, 159
EcoT22I	ATGCAT	1 cut(s)	514
EcoT38I	GRGCYC	1 cut(s)	219
EgeI	GGCGCC	1 cut(s)	382
EheI	GGCGCC	1 cut(s)	382
ErhI	CCWWGG	2 cut(s)	25, 159
FaiI	YATR	6 cut(s)	20, 90, 155, 510, 566, 583
Fnu4HI	GCNGC	2 cut(s)	549, 609
FriOI	GRGCYC	1 cut(s)	219
Fsp4HI	GCNGC	2 cut(s)	549, 609
FspBI	CTAG	3 cut(s)	59, 135, 616
GlaI	GCGC	1 cut(s)	382
GluI	GCNGC	2 cut(s)	549, 609
HaeII	RGCGCY	1 cut(s)	384
HaeIII	GGCC	2 cut(s)	33, 363
HapII	CCGG	3 cut(s)	290, 360, 364
HhaI	GCGC	1 cut(s)	383
Hin1I	GRCGYC	1 cut(s)	381
Hin6I	GCGC	1 cut(s)	381
HinP1I	GCGC	1 cut(s)	381
HincII	GTYRAC	2 cut(s)	108, 227
HindII	GTYRAC	2 cut(s)	108, 227
HinfI	GANTC	1 cut(s)	10
HpaII	CCGG	3 cut(s)	290, 360, 364
HphI	GGTGA	1 cut(s)	68
Hpy166II	GTNNAC	2 cut(s)	108, 227
Hpy188I	TCNGA	2 cut(s)	301, 415
Hpy8I	GTNNAC	2 cut(s)	108, 227
Hpy99I	CGWCG	1 cut(s)	359
HpyAV	CCTTC	1 cut(s)	136
HpyCH4III	ACNGT	3 cut(s)	105, 119, 239
HpyCH4IV	ACGT	1 cut(s)	483
HpyCH4V	TGCA	2 cut(s)	512, 548
HpyF10VI	GCNNNNNNNGC	6 cut(s)	30, 70, 129, 214, 509, 548
HpyF3I	CTNAG	1 cut(s)	254
HpySE526I	ACGT	1 cut(s)	483
Hsp92I	GRCGYC	1 cut(s)	381
HspAI	GCGC	1 cut(s)	381
KasI	GGCGCC	1 cut(s)	380
KroI	GCCGGC	1 cut(s)	359
KroNI	GCCGGC	1 cut(s)	361
Kzo9I	GATC	1 cut(s)	304
LmnI	GCTCC	2 cut(s)	128, 222
Lsp1109I	GCAGC	2 cut(s)	560, 595
LweI	GCATC	1 cut(s)	490
MaeI	CTAG	3 cut(s)	59, 135, 616
MaeII	ACGT	1 cut(s)	483
MaeIII	GTNAC	1 cut(s)	99
MalI	GATC	1 cut(s)	306
MboI	GATC	1 cut(s)	304
MboII	GAAGA	2 cut(s)	188, 238
MflI	RGATCY	1 cut(s)	304
MhlI	GDGCHC	1 cut(s)	219
MluCI	AATT	2 cut(s)	203, 348
Mly113I	GGCGCC	1 cut(s)	381
MlyI	GAGTC	1 cut(s)	19
MmeI	TCCRAC	2 cut(s)	279, 350
MnlI	CCTC	9 cut(s)	84, 89, 121, 157, 231, 295, 331, 340, 353
Mph1103I	ATGCAT	1 cut(s)	514
MroNI	GCCGGC	1 cut(s)	359
MroXI	GAANNNNTTC	1 cut(s)	527
MseI	TTAA	2 cut(s)	435, 464
MspI	CCGG	3 cut(s)	290, 360, 364
MspR9I	CCNGG	2 cut(s)	194, 588
Mva1269I	GAATGC	1 cut(s)	512
MvaI	CCWGG	2 cut(s)	194, 588
MwoI	GCNNNNNNNGC	6 cut(s)	30, 70, 129, 214, 509, 548
NaeI	GCCGGC	1 cut(s)	361
NarI	GGCGCC	1 cut(s)	381
NdeII	GATC	1 cut(s)	304
NgoMIV	GCCGGC	1 cut(s)	359
NlaIV	GGNNCC	4 cut(s)	124, 288, 306, 382
NsiI	ATGCAT	1 cut(s)	514
PctI	GAATGC	1 cut(s)	512
PdiI	GCCGGC	1 cut(s)	361
PdmI	GAANNNNTTC	1 cut(s)	527
Pfl23II	CGTACG	1 cut(s)	518
PfoI	TCCNGGA	2 cut(s)	192, 586
PinAI	ACCGGT	1 cut(s)	289
PkrI	GCNGC	2 cut(s)	550, 610
PleI	GAGTC	1 cut(s)	18
PluTI	GGCGCC	1 cut(s)	384
PpsI	GAGTC	1 cut(s)	18
Psp124BI	GAGCTC	1 cut(s)	219
Psp6I	CCWGG	2 cut(s)	192, 586
PspGI	CCWGG	2 cut(s)	192, 586
PspLI	CGTACG	1 cut(s)	518
PspN4I	GGNNCC	4 cut(s)	124, 288, 306, 382
PspPI	GGNCC	2 cut(s)	32, 67
PsuI	RGATCY	1 cut(s)	304
RsaI	GTAC	1 cut(s)	520
RsaNI	GTAC	1 cut(s)	519
SacI	GAGCTC	1 cut(s)	219
SaqAI	TTAA	2 cut(s)	435, 464
SatI	GCNGC	2 cut(s)	549, 609
Sau3AI	GATC	1 cut(s)	304
Sau96I	GGNCC	2 cut(s)	32, 67
SchI	GAGTC	1 cut(s)	19
ScrFI	CCNGG	2 cut(s)	194, 588
SduI	GDGCHC	1 cut(s)	219
SfaNI	GCATC	1 cut(s)	490
SfoI	GGCGCC	1 cut(s)	382
SinI	GGWCC	1 cut(s)	67
Sse9I	AATT	2 cut(s)	203, 348
SsiI	CCGC	3 cut(s)	130, 271, 308
SspDI	GGCGCC	1 cut(s)	380
SspMI	CTAG	3 cut(s)	59, 135, 616
SstI	GAGCTC	1 cut(s)	219
StyD4I	CCNGG	2 cut(s)	192, 586
StyI	CCWWGG	2 cut(s)	25, 159
TaaI	ACNGT	3 cut(s)	105, 119, 239
TaiI	ACGT	1 cut(s)	486
TaqI	TCGA	2 cut(s)	81, 429
TasI	AATT	2 cut(s)	203, 348
Tru1I	TTAA	2 cut(s)	435, 464
Tru9I	TTAA	2 cut(s)	435, 464
TseI	GCWGC	2 cut(s)	548, 608
TspDTI	ATGAA	1 cut(s)	456
TspGWI	ACGGA	1 cut(s)	506
VpaK11BI	GGWCC	1 cut(s)	67
XmnI	GAANNNNTTC	1 cut(s)	527
XspI	CTAG	3 cut(s)	59, 135, 616
Zsp2I	ATGCAT	1 cut(s)	514

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.