Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0011377

Physical Location & Seq

Genomic Coordinates Forward (+)

30133208 .. 30136838

Gene Structure 3631 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0267000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1650 bp

ATGGGGTCAAATGTCCAGGTTGCAAGCAATATTTCCAGAGCCAGTGATCTACTCATGGCAGTAACTTCAAGTGCTGAAGTCAACAGAATGAAAATCAGTGAGTTAGCTTCGGAAGCAATGGAAGAGCTAACTAAATTGGCCCTAGCTCGAGAACCTCTATGGCAGTGTGACATAGAGAGCAATACTGAATTTCTTAGTGATATCGAGTATCTGAGGGAATTTGGACACATAAGTACGTCATTGATAGAAATCATTAGAATGGTTGAGGTGGGAGACTCTCAATCTGACCTGCCAAGATTCGGAAGCATTAACAATTCTGAATTTTCCATGGAAAGTGAATATAGGCCAATATCGACAACAAATCAACCTGGAAAACCAGTTAGTTTGGAATCTTCACGAGCTATTGACTATGTCAAAATGAAAGCAGTCAACATTGTTCAATTGCTAATGGATTTGAAGCAATGGCTACTGGTGTTTCCTAATATTGTATCTAGAGCAAAAGTAGTGGGAGTATTATCATCAACAAGATTCGAAGGCAACTATGATGGAACTCTGCAAGTGATGACAGCTGAGTTTCATGCCCCAACACCACTTATTCCCGCTAGAGAAAGTTATTTTGCAAGGTATAGTAAACAGCTGGACAGGGGAATGTGGGTAGTTGTTGATGTATCCTTGGAAAAATTGTTTCAGTTTCCATCAACAAACTTTCGAAGACAACCATCAGGATGTTTAATTCAGGAAATGTCAAATGGATGCTCTAAGGTCATATGGGTGGAGCATGTGGAAGTGGATAATAGAATGGTTCACAATATGTGTAAGCCACTGGTCAGTTCTGGTTTTGCATTTAGCGCAAAGCGTTGGGTTTCCACTTTAGTTCGACAATGTGAATGGTTGGCAACTTTAAATTCTACAAGCCCTCCTACATCAGATTGTATGTTCGTATCGCGAGCTGGAAGAAAAAGCTTGTTGAAGCTTTCGGAGAGGATGATGAGAAGTTTTGTTGCTGATATTAGTGCTTCTACAGAAAACAAATGGAGGGCACTACCTGTATTTGGTGCCGAAGATGTAAAGGTCACAACTAAAACTAGCTTAAATGACCCTGGAAAGCCTCCAGGTACCACCTTATTATTTGCTACTTCTGTCCATCTTCCAGTCCCAAGAACTCAAATATACAATCTGCTTCGCAATGGTGAATCTCGAATCATGTGGGATATGATGTCGTATGAAAAAGATACAAGAGAAATTGCTTATATCGCAACTGGGGACCATCCAGGAAATCGCGTTTCGATAATTGAAGTAGAAAATGGTGTAACGAAGGAGATTGAAGTTTTCTACTTCCAGGAGAGTTACACAGACTCAAATGGCTCGTACATAGTTTACGCACCGATTGACCAGTTCGCCATGTCTGCTCTCTTGGATGGCGCAAACCCAGACCATGTTGCTATCCTCGCATCCGGGTTTTCCATCCTTCCTGATAGACCAATGGCCAATGATGAATCTGGTGGAAGTCTGTTGACTCTTGCGTTGCACATCACCGAAGGAGGAGCAACGGAGGAATATATCCCTCCTCAAACTGTTCAAAATATACTCAACATTATTGCCGGAACTGTGATTCAAATCACAGAAGTATTATCAAATGATGGAGAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Sacchrp_dh_NADP

Protein Analysis

549

Amino Acids

61.07

Weight (kDa)

5.1

Isoelectric Point (pI)

46.44

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
START	PF01852	111 - 296	1.8e-33	START domain
PDF2_C	PF25797	316 - 544	1.2e-61	PDF2-like, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011377)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G50450
fragaria_vesca	FvH4_3g28350 FvH4_3g28350 FvH4_3g28350 FvH4_3g28350
malus_domestica	MD11G1188300.v1.1
prunus_persica	Prupe.4G256000_v2.0.a1
pyrus_communis	pycom11g16520
rosa_chinensis	RchiOBHm_Chr5g0053381
rosa_laevigata	RLG00000034765
rosa_multiflora	Rmu_co8409909.1_g000001 Rmu_sc0007379.1_g000003
rosa_roxburghii	Rroxscaffold_1G00029110 Rroxscaffold_2G00125810 Rroxscaffold_7G00209420
rosa_rugosa	Rorug05G0267000
rosa_samantha	Rh5AG339700 Rh5CG376500 Rh5DG364100
rosa_wichuraiana	Rw5G032060

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	297
Acc65I	GGTACC	1 cut(s)	1115
AccB1I	GGYRCC	2 cut(s)	1055, 1115
AccII	CGCG	2 cut(s)	946, 1281
AciI	CCGC	1 cut(s)	600
AcoI	YGGCCR	1 cut(s)	1485
AcsI	RAATTY	4 cut(s)	188, 218, 320, 904
AcuI	CTGAAG	1 cut(s)	96
AfaI	GTAC	3 cut(s)	235, 1117, 1370
AfiI	CCNNNNNNNGG	2 cut(s)	299, 1052
AgsI	TTSAA	8 cut(s)	69, 440, 457, 970, 1295, 1325, 1580, 1616
AjnI	CCWGG	6 cut(s)	15, 367, 1099, 1111, 1270, 1338
Alw26I	GTCTC	1 cut(s)	267
Ama87I	CYCGRG	1 cut(s)	147
AoxI	GGCC	3 cut(s)	138, 344, 1485
ApoI	RAATTY	4 cut(s)	188, 218, 320, 904
Asp718I	GGTACC	1 cut(s)	1115
AspLEI	GCGC	2 cut(s)	851, 1424
AspS9I	GGNCC	2 cut(s)	139, 1264
AsuC2I	CCSGG	1 cut(s)	1456
AsuHPI	GGTGA	2 cut(s)	1202, 1525
AsuII	TTCGAA	2 cut(s)	531, 709
AvaI	CYCGRG	1 cut(s)	147
AvaII	GGWCC	1 cut(s)	1264
BaeGI	GKGCMC	1 cut(s)	1042
BalI	TGGCCA	1 cut(s)	1487
BanI	GGYRCC	2 cut(s)	1055, 1115
BauI	CACGAG	1 cut(s)	396
BbsI	GAAGAC	1 cut(s)	718
BccI	CCATC	8 cut(s)	539, 703, 727, 1152, 1275, 1412, 1472, 1634
BciT130I	CCWGG	6 cut(s)	17, 369, 1101, 1113, 1272, 1340
BciVI	GTATCC	1 cut(s)	679
BcnI	CCSGG	1 cut(s)	1456
BcoDI	GTCTC	1 cut(s)	267
BfaI	CTAG	4 cut(s)	143, 492, 603, 1086
BfmI	CTRYAG	1 cut(s)	1020
BfuAI	ACCTGC	1 cut(s)	297
BfuI	GTATCC	1 cut(s)	679
Bme1390I	CCNGG	7 cut(s)	17, 369, 1101, 1113, 1272, 1340, 1456
Bme18I	GGWCC	1 cut(s)	1264
BmeT110I	CYCGRG	1 cut(s)	147
BmgT120I	GGNCC	2 cut(s)	139, 1264
BmiI	GGNNCC	3 cut(s)	1057, 1117, 1265
BmrFI	CCNGG	7 cut(s)	17, 369, 1101, 1113, 1272, 1340, 1456
BmrI	ACTGGG	1 cut(s)	1269
BmsI	GCATC	2 cut(s)	743, 1460
BmuI	ACTGGG	1 cut(s)	1269
BpiI	GAAGAC	1 cut(s)	718
BpmI	CTGGAG	1 cut(s)	1095
Bpu14I	TTCGAA	2 cut(s)	531, 709
BpuMI	CCSGG	1 cut(s)	1456
BsaBI	GATNNNNATC	2 cut(s)	248, 1616
BsaJI	CCNNGG	3 cut(s)	327, 672, 1099
BsaXI	ACNNNNNCTCC	2 cut(s)	901, 931
Bsc4I	CCNNNNNNNGG	2 cut(s)	299, 1052
Bse1I	ACTGG	7 cut(s)	42, 377, 474, 828, 1151, 1264, 1393
Bse3DI	GCAATG	3 cut(s)	123, 467, 1192
Bse8I	GATNNNNATC	2 cut(s)	248, 1616
BseBI	CCWGG	6 cut(s)	17, 369, 1101, 1113, 1272, 1340
BseDI	CCNNGG	3 cut(s)	327, 672, 1099
BseGI	GGATG	7 cut(s)	731, 758, 990, 1267, 1423, 1451, 1464
BseJI	GATNNNNATC	2 cut(s)	248, 1616
BseLI	CCNNNNNNNGG	2 cut(s)	299, 1052
BseMI	GCAATG	3 cut(s)	123, 467, 1192
BseMII	CTCAG	2 cut(s)	203, 561
BseNI	ACTGG	7 cut(s)	42, 377, 474, 828, 1151, 1264, 1393
BseRI	GAGGAG	2 cut(s)	1557, 1557
BseSI	GKGCMC	1 cut(s)	1042
Bsh1236I	CGCG	2 cut(s)	946, 1281
BshFI	GGCC	3 cut(s)	140, 346, 1487
BshNI	GGYRCC	2 cut(s)	1055, 1115
BsiHKCI	CYCGRG	1 cut(s)	147
BsiSI	CCGG	2 cut(s)	1455, 1602
BslFI	GGGAC	2 cut(s)	1139, 1277
BslI	CCNNNNNNNGG	2 cut(s)	299, 1052
BsmAI	GTCTC	1 cut(s)	267
BsmFI	GGGAC	2 cut(s)	1139, 1277
BsnI	GGCC	3 cut(s)	140, 346, 1487
BsoBI	CYCGRG	1 cut(s)	147
Bsp119I	TTCGAA	2 cut(s)	531, 709
Bsp1286I	GDGCHC	1 cut(s)	1042
Bsp143I	GATC	1 cut(s)	46
Bsp19I	CCATGG	1 cut(s)	327
Bsp68I	TCGCGA	1 cut(s)	946
BspACI	CCGC	1 cut(s)	600
BspANI	GGCC	3 cut(s)	140, 346, 1487
BspCNI	CTCAG	2 cut(s)	204, 562
BspFNI	CGCG	2 cut(s)	946, 1281
BspLI	GGNNCC	3 cut(s)	1057, 1117, 1265
BspMI	ACCTGC	1 cut(s)	297
BspQI	GCTCTTC	1 cut(s)	117
BspT104I	TTCGAA	2 cut(s)	531, 709
BspT107I	GGYRCC	2 cut(s)	1055, 1115
BsrDI	GCAATG	3 cut(s)	123, 467, 1192
BsrI	ACTGG	7 cut(s)	42, 377, 474, 828, 1151, 1264, 1393
BssECI	CCNNGG	3 cut(s)	327, 672, 1099
BssMI	GATC	1 cut(s)	46
BssSI	CACGAG	1 cut(s)	396
BssT1I	CCWWGG	2 cut(s)	327, 672
Bst2BI	CACGAG	1 cut(s)	396
Bst2UI	CCWGG	6 cut(s)	17, 369, 1101, 1113, 1272, 1340
Bst4CI	ACNGT	2 cut(s)	1576, 1609
Bst6I	CTCTTC	1 cut(s)	117
BstBI	TTCGAA	2 cut(s)	531, 709
BstC8I	GCNNGC	2 cut(s)	25, 948
BstDEI	CTNAG	4 cut(s)	194, 212, 570, 759
BstDSI	CCRYGG	1 cut(s)	327
BstF5I	GGATG	7 cut(s)	731, 758, 990, 1267, 1423, 1451, 1464
BstFNI	CGCG	2 cut(s)	946, 1281
BstHHI	GCGC	2 cut(s)	851, 1424
BstKTI	GATC	1 cut(s)	49
BstMAI	GTCTC	1 cut(s)	267
BstMBI	GATC	1 cut(s)	46
BstMWI	GCNNNNNNNGC	5 cut(s)	113, 848, 1253, 1406, 1448
BstNI	CCWGG	6 cut(s)	17, 369, 1101, 1113, 1272, 1340
BstNSI	RCATGY	1 cut(s)	782
BstSCI	CCNGG	7 cut(s)	15, 367, 1099, 1111, 1270, 1338, 1454
BstSFI	CTRYAG	1 cut(s)	1020
BstSLI	GKGCMC	1 cut(s)	1042
BstUI	CGCG	2 cut(s)	946, 1281
BstV2I	GAAGAC	1 cut(s)	718
BsuI	GTATCC	1 cut(s)	679
BsuRI	GGCC	3 cut(s)	140, 346, 1487
BtgI	CCRYGG	1 cut(s)	327
BtsCI	GGATG	7 cut(s)	731, 758, 990, 1267, 1423, 1451, 1464
BtsI	GCAGTG	1 cut(s)	170
BtsIMutI	CAGTG	4 cut(s)	49, 103, 170, 821
BtuMI	TCGCGA	1 cut(s)	946
BveI	ACCTGC	1 cut(s)	297
Cac8I	GCNNGC	2 cut(s)	25, 948
CfoI	GCGC	2 cut(s)	851, 1424
Cfr13I	GGNCC	2 cut(s)	139, 1264
Csp6I	GTAC	3 cut(s)	234, 1116, 1369
CspCI	CAANNNNNGTGG	2 cut(s)	486, 521
CviAII	CATG	7 cut(s)	55, 328, 578, 779, 1204, 1402, 1436
CviQI	GTAC	3 cut(s)	234, 1116, 1369
DdeI	CTNAG	4 cut(s)	194, 212, 570, 759
DpnI	GATC	1 cut(s)	48
DpnII	GATC	1 cut(s)	46
DraI	TTTAAA	1 cut(s)	903
EaeI	YGGCCR	1 cut(s)	1485
Eam1104I	CTCTTC	1 cut(s)	117
EarI	CTCTTC	1 cut(s)	117
Eco130I	CCWWGG	2 cut(s)	327, 672
Eco32I	GATATC	1 cut(s)	202
Eco47I	GGWCC	1 cut(s)	1264
Eco57I	CTGAAG	1 cut(s)	96
Eco88I	CYCGRG	1 cut(s)	147
EcoRII	CCWGG	6 cut(s)	15, 367, 1099, 1111, 1270, 1338
EcoRV	GATATC	1 cut(s)	202
EcoT14I	CCWWGG	2 cut(s)	327, 672
ErhI	CCWWGG	2 cut(s)	327, 672
FaeI	CATG	7 cut(s)	58, 331, 581, 782, 1207, 1405, 1439
FaqI	GGGAC	2 cut(s)	1139, 1277
FatI	CATG	7 cut(s)	54, 327, 577, 778, 1203, 1401, 1435
FauI	CCCGC	1 cut(s)	607
FauNDI	CATATG	1 cut(s)	767
FokI	GGATG	7 cut(s)	738, 765, 997, 1254, 1430, 1438, 1451
FspBI	CTAG	4 cut(s)	143, 492, 603, 1086
GlaI	GCGC	2 cut(s)	850, 1423
GsuI	CTGGAG	1 cut(s)	1095
HaeIII	GGCC	3 cut(s)	140, 346, 1487
HapII	CCGG	2 cut(s)	1455, 1602
HhaI	GCGC	2 cut(s)	851, 1424
Hin1II	CATG	7 cut(s)	58, 331, 581, 782, 1207, 1405, 1439
Hin6I	GCGC	2 cut(s)	849, 1422
HinP1I	GCGC	2 cut(s)	849, 1422
HincII	GTYRAC	3 cut(s)	82, 430, 1515
HindII	GTYRAC	3 cut(s)	82, 430, 1515
HindIII	AAGCTT	2 cut(s)	961, 971
HpaII	CCGG	2 cut(s)	1455, 1602
HphI	GGTGA	2 cut(s)	1202, 1525
Hpy166II	GTNNAC	6 cut(s)	82, 430, 632, 805, 1378, 1515
Hpy188I	TCNGA	7 cut(s)	112, 213, 286, 302, 319, 928, 979
Hpy188III	TCNNGA	9 cut(s)	36, 149, 396, 492, 723, 737, 945, 1197, 1472
Hpy8I	GTNNAC	6 cut(s)	82, 430, 632, 805, 1378, 1515
HpyAV	CCTTC	4 cut(s)	527, 1309, 1478, 1532
HpyCH4III	ACNGT	2 cut(s)	1576, 1609
HpyCH4IV	ACGT	1 cut(s)	236
HpyCH4V	TGCA	5 cut(s)	23, 556, 620, 842, 1528
HpyF10VI	GCNNNNNNNGC	5 cut(s)	113, 848, 1253, 1406, 1448
HpyF3I	CTNAG	4 cut(s)	194, 212, 570, 759
HpySE526I	ACGT	1 cut(s)	236
Hsp92II	CATG	7 cut(s)	58, 331, 581, 782, 1207, 1405, 1439
HspAI	GCGC	2 cut(s)	849, 1422
KpnI	GGTACC	1 cut(s)	1119
Kzo9I	GATC	1 cut(s)	46
LguI	GCTCTTC	1 cut(s)	117
LmnI	GCTCC	2 cut(s)	775, 1544
LweI	GCATC	2 cut(s)	743, 1460
MaeI	CTAG	4 cut(s)	143, 492, 603, 1086
MaeII	ACGT	1 cut(s)	236
MaeIII	GTNAC	5 cut(s)	61, 167, 1072, 1309, 1346
MalI	GATC	1 cut(s)	48
MboI	GATC	1 cut(s)	46
MboII	GAAGA	6 cut(s)	134, 384, 723, 966, 1073, 1139
MfeI	CAATTG	1 cut(s)	440
MhlI	GDGCHC	1 cut(s)	1042
MlsI	TGGCCA	1 cut(s)	1487
MluNI	TGGCCA	1 cut(s)	1487
MlyI	GAGTC	3 cut(s)	269, 1349, 1510
Mox20I	TGGCCA	1 cut(s)	1487
MscI	TGGCCA	1 cut(s)	1487
MseI	TTAA	4 cut(s)	309, 731, 902, 1091
MslI	CAYNNNNRTG	3 cut(s)	257, 724, 770
Msp20I	TGGCCA	1 cut(s)	1487
MspA1I	CMGCKG	2 cut(s)	569, 637
MspI	CCGG	2 cut(s)	1455, 1602
MspR9I	CCNGG	7 cut(s)	17, 369, 1101, 1113, 1272, 1340, 1456
MunI	CAATTG	1 cut(s)	440
MvaI	CCWGG	6 cut(s)	17, 369, 1101, 1113, 1272, 1340
MvnI	CGCG	2 cut(s)	946, 1281
MwoI	GCNNNNNNNGC	5 cut(s)	113, 848, 1253, 1406, 1448
NciI	CCSGG	1 cut(s)	1456
NcoI	CCATGG	1 cut(s)	327
NdeI	CATATG	1 cut(s)	767
NdeII	GATC	1 cut(s)	46
NlaIII	CATG	7 cut(s)	58, 331, 581, 782, 1207, 1405, 1439
NlaIV	GGNNCC	3 cut(s)	1057, 1117, 1265
NmuCI	GTSAC	2 cut(s)	167, 1072
NruI	TCGCGA	1 cut(s)	946
NspI	RCATGY	1 cut(s)	782
NspV	TTCGAA	2 cut(s)	531, 709
PaeR7I	CTCGAG	1 cut(s)	147
PciSI	GCTCTTC	1 cut(s)	117
PfeI	GAWTC	7 cut(s)	297, 389, 528, 1193, 1200, 1496, 1612
PflFI	GACNNNGTC	1 cut(s)	410
PfoI	TCCNGGA	2 cut(s)	1270, 1338
PleI	GAGTC	3 cut(s)	269, 1349, 1510
PpsI	GAGTC	3 cut(s)	269, 1349, 1510
Psp6I	CCWGG	6 cut(s)	15, 367, 1099, 1111, 1270, 1338
PspGI	CCWGG	6 cut(s)	15, 367, 1099, 1111, 1270, 1338
PspN4I	GGNNCC	3 cut(s)	1057, 1117, 1265
PspPI	GGNCC	2 cut(s)	139, 1264
PsyI	GACNNNGTC	1 cut(s)	410
PvuII	CAGCTG	2 cut(s)	569, 637
RruI	TCGCGA	1 cut(s)	946
RsaI	GTAC	3 cut(s)	235, 1117, 1370
RsaNI	GTAC	3 cut(s)	234, 1116, 1369
RseI	CAYNNNNRTG	3 cut(s)	257, 724, 770
SapI	GCTCTTC	1 cut(s)	117
SaqAI	TTAA	4 cut(s)	309, 731, 902, 1091
Sau3AI	GATC	1 cut(s)	46
Sau96I	GGNCC	2 cut(s)	139, 1264
SchI	GAGTC	3 cut(s)	269, 1349, 1510
ScrFI	CCNGG	7 cut(s)	17, 369, 1101, 1113, 1272, 1340, 1456
SduI	GDGCHC	1 cut(s)	1042
SfaNI	GCATC	2 cut(s)	743, 1460
SfcI	CTRYAG	1 cut(s)	1020
Sfr274I	CTCGAG	1 cut(s)	147
SfuI	TTCGAA	2 cut(s)	531, 709
SinI	GGWCC	1 cut(s)	1264
SlaI	CTCGAG	1 cut(s)	147
SmiMI	CAYNNNNRTG	3 cut(s)	257, 724, 770
SmlI	CTYRAG	1 cut(s)	147
SmoI	CTYRAG	1 cut(s)	147
SsiI	CCGC	1 cut(s)	600
SspI	AATATT	2 cut(s)	31, 484
SspMI	CTAG	4 cut(s)	143, 492, 603, 1086
StyD4I	CCNGG	7 cut(s)	15, 367, 1099, 1111, 1270, 1338, 1454
StyI	CCWWGG	2 cut(s)	327, 672
TaaI	ACNGT	2 cut(s)	1576, 1609
TaiI	ACGT	1 cut(s)	239
TaqI	TCGA	8 cut(s)	148, 204, 353, 531, 709, 877, 1198, 1286
TfiI	GAWTC	7 cut(s)	297, 389, 528, 1193, 1200, 1496, 1612
Tru1I	TTAA	4 cut(s)	309, 731, 902, 1091
Tru9I	TTAA	4 cut(s)	309, 731, 902, 1091
TscAI	CASTG	4 cut(s)	49, 103, 170, 828
TseFI	GTSAC	2 cut(s)	167, 1072
Tsp45I	GTSAC	2 cut(s)	167, 1072
TspDTI	ATGAA	5 cut(s)	104, 434, 566, 1239, 1509
TspGWI	ACGGA	1 cut(s)	1565
TspRI	CASTG	4 cut(s)	49, 103, 170, 828
Tth111I	GACNNNGTC	1 cut(s)	410
VpaK11BI	GGWCC	1 cut(s)	1264
XapI	RAATTY	4 cut(s)	188, 218, 320, 904
XbaI	TCTAGA	1 cut(s)	491
XceI	RCATGY	1 cut(s)	782
XhoI	CTCGAG	1 cut(s)	147
XspI	CTAG	4 cut(s)	143, 492, 603, 1086

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.