Prupe.5G029600_v2.0.a1

Dolichol phosphate-mannose biosynthesis regulatory

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp05
Physical Location & Seq
Reverse (-)
3464212 .. 3465922
1711 bp
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UTR
Exon/CDS
Intron
Prupe.5G029600.1

Sequence Viewer

Length: 243 bp
ATGGAATTGGCAGACAAGGCCGTTGGGTTTCTGTTATCCTATATCAGTTTATCTATATTCACTTATTACACATTTTGGGTTATAATCCTGCCGTTTGTAAACAGTGATCACTTTATCCACCGGTATTTCCTGCCCCAAGAATATGCCATATTAATACCTGTGTTTGCTGGCATGGTGCTTCTCTGCTTCTTATGCATTTTCATTGGATATGTGATGCTCAAATCCAAAAAGAAGAAAGCATGA

Protein Analysis

81

Amino Acids

9.35

Weight (kDa)

8.98

Isoelectric Point (pI)

26.69

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0015298)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 83
AgeI ACCGGT 1 cut(s) 120
AoxI GGCC 1 cut(s) 18
AseI ATTAAT 1 cut(s) 152
AsiGI ACCGGT 1 cut(s) 120
BceAI ACGGC 2 cut(s) 5, 76
BclI TGATCA 1 cut(s) 106
BmsI GCATC 1 cut(s) 204
BsaWI WCCGGW 1 cut(s) 120
Bse118I RCCGGY 1 cut(s) 120
BshFI GGCC 1 cut(s) 20
BshTI ACCGGT 1 cut(s) 120
BsiSI CCGG 1 cut(s) 121
BsnI GGCC 1 cut(s) 20
Bsp143I GATC 1 cut(s) 106
BspANI GGCC 1 cut(s) 20
BsrFI RCCGGY 1 cut(s) 120
BssAI RCCGGY 1 cut(s) 120
BssMI GATC 1 cut(s) 106
Bst4CI ACNGT 1 cut(s) 104
BstC8I GCNNGC 1 cut(s) 169
BstKTI GATC 1 cut(s) 109
BstMBI GATC 1 cut(s) 106
BstMWI GCNNNNNNNGC 2 cut(s) 17, 192
BsuRI GGCC 1 cut(s) 20
BtsIMutI CAGTG 1 cut(s) 109
Cac8I GCNNGC 1 cut(s) 169
Cfr10I RCCGGY 1 cut(s) 120
CspAI ACCGGT 1 cut(s) 120
CviAII CATG 2 cut(s) 172, 240
CviJI RGCY 1 cut(s) 20
CviKI_1 RGCY 1 cut(s) 20
DpnI GATC 1 cut(s) 108
DpnII GATC 1 cut(s) 106
EcoT22I ATGCAT 1 cut(s) 197
FaeI CATG 2 cut(s) 175, 243
FaiI YATR 9 cut(s) 42, 56, 83, 144, 149, 173, 193, 210, 241
FatI CATG 2 cut(s) 171, 239
FbaI TGATCA 1 cut(s) 106
HaeIII GGCC 1 cut(s) 20
HapII CCGG 1 cut(s) 121
Hin1II CATG 2 cut(s) 175, 243
HpaII CCGG 1 cut(s) 121
Hpy166II GTNNAC 1 cut(s) 100
Hpy8I GTNNAC 1 cut(s) 100
HpyCH4III ACNGT 1 cut(s) 104
HpyCH4V TGCA 1 cut(s) 195
HpyF10VI GCNNNNNNNGC 2 cut(s) 17, 192
Hsp92II CATG 2 cut(s) 175, 243
Ksp22I TGATCA 1 cut(s) 106
Kzo9I GATC 1 cut(s) 106
LpnPI CCDG 5 cut(s) 101, 134, 143, 153, 171
LweI GCATC 1 cut(s) 204
MalI GATC 1 cut(s) 108
MboI GATC 1 cut(s) 106
MluCI AATT 1 cut(s) 5
Mph1103I ATGCAT 1 cut(s) 197
MseI TTAA 1 cut(s) 152
MspI CCGG 1 cut(s) 121
MwoI GCNNNNNNNGC 2 cut(s) 17, 192
NdeII GATC 1 cut(s) 106
NlaIII CATG 2 cut(s) 175, 243
NsiI ATGCAT 1 cut(s) 197
PinAI ACCGGT 1 cut(s) 120
PshBI ATTAAT 1 cut(s) 152
PsiI TTATAA 1 cut(s) 83
SaqAI TTAA 1 cut(s) 152
Sau3AI GATC 1 cut(s) 106
SetI ASST 1 cut(s) 160
SfaNI GCATC 1 cut(s) 204
SgeI CNNG 8 cut(s) 28, 100, 133, 142, 149, 170, 180, 184
Sse9I AATT 1 cut(s) 5
TaaI ACNGT 1 cut(s) 104
TasI AATT 1 cut(s) 5
Tru1I TTAA 1 cut(s) 152
Tru9I TTAA 1 cut(s) 152
TscAI CASTG 1 cut(s) 109
TspDTI ATGAA 1 cut(s) 190
TspRI CASTG 1 cut(s) 109
VspI ATTAAT 1 cut(s) 152
Zsp2I ATGCAT 1 cut(s) 197
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.