Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7A

Orthogroup ID

OG0015298

Physical Location & Seq

Genomic Coordinates Forward (+)

26381461 .. 26385014

Gene Structure 3554 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7AG258900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 561 bp

ATGCCAAGGCTAGCTTGCGGGGCTCCTGCGAGGGCTATGCGCAGGGGAGCCGATGAGTCTCTCTCTTCTGATCCTACACCAACGCATCATAATCTTCGTCCTCCCTACCTTACTCTTGGGCTGCGATCGCCGTTGGGATTCAAACAAGGATTACTATTGTCTCTGGCAGCAGAAGCCATAAAGATTACAATGGAATGGGCGGACAAGGCTGTTGGATTTCTATTGTCGTATATCAGTTTATCTATATTCACTTATTACACCTTTTGGGTCATTATTCTGCCATTTGTGAACAGTGATCACTTTATCCACCGGTATTTTTTACCCCAAGAATATGCCATCTTAATCCCTGTATTTGCTGGCATGGTGCTTCTTTGCTTTCTCTCCATATTCATTGGTACTCTGGACTTGCTGGCAGAGCTCCAGATAGAACTGAGTGATGCAAGTATCATAGTGAAGTTTGTTGAAGATGTGGGTCGCCTCGTCGGGATCCAACCAGTTTTGAATGATTCCATTTTGGCAGAGTATATCAATGTCCTTGGTAGTGCTGATGAGGCAATCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0006066 GO:0006464 GO:0006486 GO:0006493 GO:0006497 GO:0006505 GO:0006506 GO:0006629 GO:0006643 GO:0006644 GO:0006650 GO:0006661 GO:0006664 GO:0006720 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0008610 GO:0008654 GO:0009058 GO:0009059 GO:0009100 GO:0009101 GO:0009247 GO:0009987 GO:0012505 GO:0016020 GO:0016093 GO:0019348 GO:0019538 GO:0019637 GO:0030234 GO:0031501 GO:0031984 GO:0032991 GO:0033185 GO:0034645 GO:0035268 GO:0035269 GO:0036211 GO:0042157 GO:0042158 GO:0042175 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043413 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044260 GO:0044267 GO:0044281 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0045017 GO:0046467 GO:0046474 GO:0046486 GO:0046488 GO:0050790 GO:0065007 GO:0065009 GO:0070085 GO:0071704 GO:0090407 GO:0097502 GO:0098772 GO:0098827 GO:1901135 GO:1901137 GO:1901564 GO:1901566 GO:1901576 GO:1901615 GO:1902494 GO:1903509 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko00510 ko00563 ko01100 map00510 map00563 map01100

Pfam Domains

Protein Families

DPM2

Protein Analysis

186

Amino Acids

20.6

Weight (kDa)

5.09

Isoelectric Point (pI)

41.88

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DPM2	PF07297	67 - 133	2.7e-28	Dolichol phosphate-mannose biosynthesis regulatory protein (DPM2)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0015298)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G74340 AT1G74340
malus_domestica	MD06G1025500.v1.1 MD16G1280900.v1.1
prunus_persica	Prupe.5G029600_v2.0.a1
pyrus_communis	pycom06g02060 pycom06g02070
rosa_chinensis	RchiOBHm_Chr7g0211611
rosa_laevigata	RLG00000002991
rosa_multiflora	Rmu_sc0003760.1_g000018 Rmu_sc0004232.1_g000020
rosa_roxburghii	Rroxscaffold_3G00247680
rosa_rugosa	Rorug07G0126300
rosa_samantha	Rh7AG258900 Rh7CG276000
rosa_wichuraiana	Rw7G022130

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	41
AciI	CCGC	2 cut(s)	18, 200
AclWI	GGATC	3 cut(s)	65, 481, 494
AfaI	GTAC	1 cut(s)	397
AgeI	ACCGGT	1 cut(s)	309
AgsI	TTSAA	3 cut(s)	142, 464, 502
AluBI	AGCT	2 cut(s)	14, 418
AluI	AGCT	2 cut(s)	14, 418
Alw21I	GWGCWC	1 cut(s)	420
Alw26I	GTCTC	2 cut(s)	63, 165
AlwI	GGATC	3 cut(s)	65, 481, 494
ApeKI	GCWGC	2 cut(s)	121, 167
AsiGI	ACCGGT	1 cut(s)	309
AsiSI	GCGATCGC	1 cut(s)	128
AspLEI	GCGC	1 cut(s)	42
AsuNHI	GCTAGC	1 cut(s)	10
BamHI	GGATCC	1 cut(s)	486
BanII	GRGCYC	2 cut(s)	25, 420
Bbv12I	GWGCWC	1 cut(s)	420
BbvI	GCAGC	2 cut(s)	108, 179
BccI	CCATC	1 cut(s)	344
BceAI	ACGGC	1 cut(s)	115
BcgI	CGANNNNNNTGC	2 cut(s)	19, 53
BclI	TGATCA	1 cut(s)	295
BcoDI	GTCTC	2 cut(s)	63, 165
BfaI	CTAG	1 cut(s)	11
BisI	GCNGC	2 cut(s)	122, 168
BlsI	GCNGC	2 cut(s)	123, 169
BmiI	GGNNCC	3 cut(s)	24, 49, 488
BmsI	GCATC	2 cut(s)	94, 427
BmtI	GCTAGC	1 cut(s)	14
BplI	GAGNNNNNCTC	2 cut(s)	47, 79
BpmI	CTGGAG	1 cut(s)	404
BsaJI	CCNNGG	2 cut(s)	5, 535
BsaWI	WCCGGW	1 cut(s)	309
Bse118I	RCCGGY	1 cut(s)	309
Bse1I	ACTGG	1 cut(s)	494
BseDI	CCNNGG	2 cut(s)	5, 535
BseMII	CTCAG	1 cut(s)	422
BseNI	ACTGG	1 cut(s)	494
BseXI	GCAGC	2 cut(s)	108, 179
Bsh1285I	CGRYCG	1 cut(s)	128
BshTI	ACCGGT	1 cut(s)	309
BsiEI	CGRYCG	1 cut(s)	128
BsiHKAI	GWGCWC	1 cut(s)	420
BsiSI	CCGG	1 cut(s)	310
BsmAI	GTCTC	2 cut(s)	63, 165
Bsp1286I	GDGCHC	2 cut(s)	25, 420
Bsp143I	GATC	4 cut(s)	70, 125, 295, 486
BspACI	CCGC	2 cut(s)	18, 200
BspCNI	CTCAG	1 cut(s)	423
BspLI	GGNNCC	3 cut(s)	24, 49, 488
BspOI	GCTAGC	1 cut(s)	14
BspPI	GGATC	3 cut(s)	65, 481, 494
BsrFI	RCCGGY	1 cut(s)	309
BsrI	ACTGG	1 cut(s)	494
BssAI	RCCGGY	1 cut(s)	309
BssECI	CCNNGG	2 cut(s)	5, 535
BssMI	GATC	4 cut(s)	70, 125, 295, 486
BssT1I	CCWWGG	2 cut(s)	5, 535
Bst4CI	ACNGT	1 cut(s)	293
Bst6I	CTCTTC	1 cut(s)	70
BstC8I	GCNNGC	4 cut(s)	12, 16, 358, 411
BstDEI	CTNAG	1 cut(s)	431
BstHHI	GCGC	1 cut(s)	42
BstKTI	GATC	4 cut(s)	73, 128, 298, 489
BstMAI	GTCTC	2 cut(s)	63, 165
BstMBI	GATC	4 cut(s)	70, 125, 295, 486
BstMCI	CGRYCG	1 cut(s)	128
BstMWI	GCNNNNNNNGC	6 cut(s)	20, 127, 173, 206, 415, 551
BstV1I	GCAGC	2 cut(s)	108, 179
BstX2I	RGATCY	1 cut(s)	486
BstYI	RGATCY	1 cut(s)	486
BtsIMutI	CAGTG	1 cut(s)	298
Cac8I	GCNNGC	4 cut(s)	12, 16, 358, 411
CfoI	GCGC	1 cut(s)	42
Cfr10I	RCCGGY	1 cut(s)	309
Csp6I	GTAC	1 cut(s)	396
CspAI	ACCGGT	1 cut(s)	309
CviAII	CATG	1 cut(s)	361
CviJI	RGCY	9 cut(s)	10, 14, 23, 35, 50, 121, 176, 209, 418
CviKI_1	RGCY	9 cut(s)	10, 14, 23, 35, 50, 121, 176, 209, 418
CviQI	GTAC	1 cut(s)	396
DdeI	CTNAG	1 cut(s)	431
DpnI	GATC	4 cut(s)	72, 127, 297, 488
DpnII	GATC	4 cut(s)	70, 125, 295, 486
Eam1104I	CTCTTC	1 cut(s)	70
EarI	CTCTTC	1 cut(s)	70
EciI	GGCGGA	1 cut(s)	215
Ecl136II	GAGCTC	1 cut(s)	418
Eco130I	CCWWGG	2 cut(s)	5, 535
Eco24I	GRGCYC	2 cut(s)	25, 420
Eco53kI	GAGCTC	1 cut(s)	418
EcoICRI	GAGCTC	1 cut(s)	418
EcoT14I	CCWWGG	2 cut(s)	5, 535
EcoT38I	GRGCYC	2 cut(s)	25, 420
ErhI	CCWWGG	2 cut(s)	5, 535
FaeI	CATG	1 cut(s)	364
FalI	AAGNNNNNCTT	1 cut(s)	30
FatI	CATG	1 cut(s)	360
FauI	CCCGC	1 cut(s)	11
FbaI	TGATCA	1 cut(s)	295
Fnu4HI	GCNGC	2 cut(s)	122, 168
FriOI	GRGCYC	2 cut(s)	25, 420
Fsp4HI	GCNGC	2 cut(s)	122, 168
FspBI	CTAG	1 cut(s)	11
FspI	TGCGCA	1 cut(s)	41
GlaI	GCGC	1 cut(s)	41
GluI	GCNGC	2 cut(s)	122, 168
GsuI	CTGGAG	1 cut(s)	404
HapII	CCGG	1 cut(s)	310
HhaI	GCGC	1 cut(s)	42
Hin1II	CATG	1 cut(s)	364
Hin6I	GCGC	1 cut(s)	40
HinP1I	GCGC	1 cut(s)	40
HinfI	GANTC	3 cut(s)	56, 138, 506
HpaII	CCGG	1 cut(s)	310
Hpy166II	GTNNAC	1 cut(s)	289
Hpy188I	TCNGA	1 cut(s)	70
Hpy188III	TCNNGA	3 cut(s)	401, 421, 484
Hpy8I	GTNNAC	1 cut(s)	289
Hpy99I	CGWCG	1 cut(s)	485
HpyCH4III	ACNGT	1 cut(s)	293
HpyCH4V	TGCA	1 cut(s)	440
HpyF10VI	GCNNNNNNNGC	6 cut(s)	20, 127, 173, 206, 415, 551
HpyF3I	CTNAG	1 cut(s)	431
Hsp92II	CATG	1 cut(s)	364
HspAI	GCGC	1 cut(s)	40
Ksp22I	TGATCA	1 cut(s)	295
Kzo9I	GATC	4 cut(s)	70, 125, 295, 486
LmnI	GCTCC	3 cut(s)	28, 47, 423
Lsp1109I	GCAGC	2 cut(s)	108, 179
LweI	GCATC	2 cut(s)	94, 427
MaeI	CTAG	1 cut(s)	11
MalI	GATC	4 cut(s)	72, 127, 297, 488
MboI	GATC	4 cut(s)	70, 125, 295, 486
MboII	GAAGA	3 cut(s)	57, 86, 476
MflI	RGATCY	1 cut(s)	486
MhlI	GDGCHC	2 cut(s)	25, 420
MlyI	GAGTC	1 cut(s)	65
MmeI	TCCRAC	2 cut(s)	193, 514
MnlI	CCTC	4 cut(s)	24, 111, 488, 544
MseI	TTAA	1 cut(s)	341
MspI	CCGG	1 cut(s)	310
MwoI	GCNNNNNNNGC	6 cut(s)	20, 127, 173, 206, 415, 551
NdeII	GATC	4 cut(s)	70, 125, 295, 486
NheI	GCTAGC	1 cut(s)	10
NlaIII	CATG	1 cut(s)	364
NlaIV	GGNNCC	3 cut(s)	24, 49, 488
NsbI	TGCGCA	1 cut(s)	41
PfeI	GAWTC	2 cut(s)	138, 506
PinAI	ACCGGT	1 cut(s)	309
PkrI	GCNGC	2 cut(s)	123, 169
Ple19I	CGATCG	1 cut(s)	128
PleI	GAGTC	1 cut(s)	64
PpsI	GAGTC	1 cut(s)	64
Psp124BI	GAGCTC	1 cut(s)	420
PspN4I	GGNNCC	3 cut(s)	24, 49, 488
PsuI	RGATCY	1 cut(s)	486
PvuI	CGATCG	1 cut(s)	128
RgaI	GCGATCGC	1 cut(s)	128
RsaI	GTAC	1 cut(s)	397
RsaNI	GTAC	1 cut(s)	396
SacI	GAGCTC	1 cut(s)	420
SaqAI	TTAA	1 cut(s)	341
SatI	GCNGC	2 cut(s)	122, 168
Sau3AI	GATC	4 cut(s)	70, 125, 295, 486
SchI	GAGTC	1 cut(s)	65
SduI	GDGCHC	2 cut(s)	25, 420
SetI	ASST	4 cut(s)	16, 111, 263, 420
SfaAI	GCGATCGC	1 cut(s)	128
SfaNI	GCATC	2 cut(s)	94, 427
SgfI	GCGATCGC	1 cut(s)	128
SsiI	CCGC	2 cut(s)	18, 200
SspMI	CTAG	1 cut(s)	11
SstI	GAGCTC	1 cut(s)	420
StyI	CCWWGG	2 cut(s)	5, 535
TaaI	ACNGT	1 cut(s)	293
TfiI	GAWTC	2 cut(s)	138, 506
Tru1I	TTAA	1 cut(s)	341
Tru9I	TTAA	1 cut(s)	341
TscAI	CASTG	1 cut(s)	298
TseI	GCWGC	2 cut(s)	121, 167
TspDTI	ATGAA	1 cut(s)	379
TspRI	CASTG	1 cut(s)	298
XspI	CTAG	1 cut(s)	11

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.