Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr6

Orthogroup ID

OG0015298

Physical Location & Seq

Genomic Coordinates Forward (+)

2514476 .. 2514821

Gene Structure 346 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom06g02060.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 243 bp

ATGGAATTGGCAGACAAGGCCGTCGGATTTCTTTTATCCTACATAAGTTTGTCGATATTCACTTACTACACATTTTGGGTGATTATCCTGCCGTTTGTAAACAACGATCACTTCATCCACCGGTATTTCCTCCCACAAGAGTACGCCATACTTATACCTGTGTTTGCTGGCATGGTGCTTCTCTGCTTTTTATGCATTTTCATTGGCTATGTCATGTTAAAATCCAAAAAGAAGAAAGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0006066 GO:0006464 GO:0006486 GO:0006493 GO:0006497 GO:0006505 GO:0006506 GO:0006629 GO:0006643 GO:0006644 GO:0006650 GO:0006661 GO:0006664 GO:0006720 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0008610 GO:0008654 GO:0009058 GO:0009059 GO:0009100 GO:0009101 GO:0009247 GO:0009987 GO:0012505 GO:0016020 GO:0016093 GO:0019348 GO:0019538 GO:0019637 GO:0030234 GO:0031501 GO:0031984 GO:0032991 GO:0033185 GO:0034645 GO:0035268 GO:0035269 GO:0036211 GO:0042157 GO:0042158 GO:0042175 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043413 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044260 GO:0044267 GO:0044281 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0045017 GO:0046467 GO:0046474 GO:0046486 GO:0046488 GO:0050790 GO:0065007 GO:0065009 GO:0070085 GO:0071704 GO:0090407 GO:0097502 GO:0098772 GO:0098827 GO:1901135 GO:1901137 GO:1901564 GO:1901566 GO:1901576 GO:1901615 GO:1902494 GO:1903509 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko00510 ko00563 ko01100 map00510 map00563 map01100

Pfam Domains

Protein Families

DPM2

Protein Analysis

81

Amino Acids

9.38

Weight (kDa)

8.98

Isoelectric Point (pI)

26.69

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015298)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G74340 AT1G74340
malus_domestica	MD06G1025500.v1.1 MD16G1280900.v1.1
prunus_persica	Prupe.5G029600_v2.0.a1
pyrus_communis	pycom06g02060 pycom06g02070
rosa_chinensis	RchiOBHm_Chr7g0211611
rosa_laevigata	RLG00000002991
rosa_multiflora	Rmu_sc0003760.1_g000018 Rmu_sc0004232.1_g000020
rosa_roxburghii	Rroxscaffold_3G00247680
rosa_rugosa	Rorug07G0126300
rosa_samantha	Rh7AG258900 Rh7CG276000
rosa_wichuraiana	Rw7G022130

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	20
AfaI	GTAC	1 cut(s)	143
AgeI	ACCGGT	1 cut(s)	120
AluBI	AGCT	1 cut(s)	239
AluI	AGCT	1 cut(s)	239
AoxI	GGCC	1 cut(s)	18
AsiGI	ACCGGT	1 cut(s)	120
AsuHPI	GGTGA	1 cut(s)	91
BceAI	ACGGC	2 cut(s)	5, 76
BsaWI	WCCGGW	1 cut(s)	120
Bse118I	RCCGGY	1 cut(s)	120
BseGI	GGATG	1 cut(s)	114
BshFI	GGCC	1 cut(s)	20
BshTI	ACCGGT	1 cut(s)	120
BsiSI	CCGG	1 cut(s)	121
BsnI	GGCC	1 cut(s)	20
Bsp143I	GATC	1 cut(s)	106
BspANI	GGCC	1 cut(s)	20
BsrFI	RCCGGY	1 cut(s)	120
BssAI	RCCGGY	1 cut(s)	120
BssMI	GATC	1 cut(s)	106
BstC8I	GCNNGC	1 cut(s)	169
BstF5I	GGATG	1 cut(s)	114
BstKTI	GATC	1 cut(s)	109
BstMBI	GATC	1 cut(s)	106
BstMWI	GCNNNNNNNGC	2 cut(s)	17, 192
BsuRI	GGCC	1 cut(s)	20
BtsCI	GGATG	1 cut(s)	114
Cac8I	GCNNGC	1 cut(s)	169
Cfr10I	RCCGGY	1 cut(s)	120
Csp6I	GTAC	1 cut(s)	142
CspAI	ACCGGT	1 cut(s)	120
CviAII	CATG	2 cut(s)	172, 214
CviJI	RGCY	3 cut(s)	20, 207, 239
CviKI_1	RGCY	3 cut(s)	20, 207, 239
CviQI	GTAC	1 cut(s)	142
DpnI	GATC	1 cut(s)	108
DpnII	GATC	1 cut(s)	106
DrdI	GACNNNNNNGTC	1 cut(s)	20
DseDI	GACNNNNNNGTC	1 cut(s)	20
EcoT22I	ATGCAT	1 cut(s)	197
FaeI	CATG	2 cut(s)	175, 217
FaiI	YATR	7 cut(s)	44, 149, 155, 173, 193, 210, 215
FatI	CATG	2 cut(s)	171, 213
FokI	GGATG	1 cut(s)	101
HaeIII	GGCC	1 cut(s)	20
HapII	CCGG	1 cut(s)	121
Hin1II	CATG	2 cut(s)	175, 217
HindIII	AAGCTT	1 cut(s)	237
HpaII	CCGG	1 cut(s)	121
HphI	GGTGA	1 cut(s)	91
Hpy166II	GTNNAC	1 cut(s)	100
Hpy188I	TCNGA	1 cut(s)	26
Hpy8I	GTNNAC	1 cut(s)	100
Hpy99I	CGWCG	1 cut(s)	26
HpyCH4V	TGCA	1 cut(s)	195
HpyF10VI	GCNNNNNNNGC	2 cut(s)	17, 192
Hsp92II	CATG	2 cut(s)	175, 217
Kzo9I	GATC	1 cut(s)	106
LpnPI	CCDG	4 cut(s)	101, 134, 153, 171
MalI	GATC	1 cut(s)	108
MboI	GATC	1 cut(s)	106
MluCI	AATT	1 cut(s)	5
MmeI	TCCRAC	1 cut(s)	4
MnlI	CCTC	1 cut(s)	140
Mph1103I	ATGCAT	1 cut(s)	197
MseI	TTAA	1 cut(s)	218
MspI	CCGG	1 cut(s)	121
MwoI	GCNNNNNNNGC	2 cut(s)	17, 192
NdeII	GATC	1 cut(s)	106
NlaIII	CATG	2 cut(s)	175, 217
NsiI	ATGCAT	1 cut(s)	197
PinAI	ACCGGT	1 cut(s)	120
RsaI	GTAC	1 cut(s)	143
RsaNI	GTAC	1 cut(s)	142
SaqAI	TTAA	1 cut(s)	218
Sau3AI	GATC	1 cut(s)	106
SetI	ASST	2 cut(s)	160, 241
SgeI	CNNG	8 cut(s)	28, 100, 133, 149, 170, 180, 184, 226
Sse9I	AATT	1 cut(s)	5
TaqI	TCGA	1 cut(s)	53
TasI	AATT	1 cut(s)	5
Tru1I	TTAA	1 cut(s)	218
Tru9I	TTAA	1 cut(s)	218
TspDTI	ATGAA	2 cut(s)	103, 190
Zsp2I	ATGCAT	1 cut(s)	197

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.