Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000007

Orthogroup ID

OG0000870

Physical Location & Seq

Genomic Coordinates Forward (+)

9963591 .. 9966178

Gene Structure 2588 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug07G0126300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1788 bp

ATGGCGGCGGACGACGCTGAATTGAAATCCACCGCTCTCTTCCCCGATGACCTGGAGCGGCCACCGGAGGACTTGCAAGAAGTACTCGGAAAGATGTTTACCGAGGAAGCTCTGACCAGCAATACAATCAAGATGGTGGAGGGTTTGTTGAGGGATGGCTTTATGAACATGGGATTGGAGATTGGGGCCAAGGTTCAGGAGACCAATGAGGTGCCCAGGGTTGTCACCGACACTGCGGTCATGGAGCACTACATCAATGCCGCCGGAGACAGGACCAAGGATGCTCTCAGAGTGTTCAAGCACATGTTGGTTTCAGGGGTGGAACCGAATGCCTACACATATGCCGTCATCATCAAGGCCCTTGCTACTGCTGACCTAAAGAAGAACCCCAATTTCGTTGTTTATGCCAAGAATTATTTTGTGGAGATGTTGGACAGGGGAATGCAGCCGAATGAGGAGACTTATGAGGCAGTGTTGGAAGGCATTGGCCGCGCTGAGAATAAGGCCGAGGCTGAGGAGGAGCGCAGGGAGTTTGTGGAGAATGTGAAAGCAAAGGGGTTTGTGCTGGTGCTCCAGAAGGAGGCCGAGGAGATGGCTAATCCTCCATCATTGAAGTCCGAGATGGATATGCTTAAGGAACATGTAATGAAGGTGTTTGAGGATGCCACCAGAGACTGTGAAGACGAGAATGCGCGAGCAAGATTCAGACAGATTGGGGAGGACTATGAATCACTGAGCAAATGTGCATTCGACCTTTTTAATGCTTTGGTACGTAAAGGGCTCAATGAGGAAGCCAAAGAGCTCTTTAAGCCTCTGTTGGATACAGCCATACTGCCCGACGAGGCTGTCTTTATCATCGTCATCCTTTTTAGCAAGACCAAGAGTGATGCTCTGAAGGTGTATGAGCATATGTTAGCTTATGGGATCACCCCCAGCTCCTGCACTTACAATTTACTCATCGCGACGCTTTCTCTTGATCCCAATTTCATTGGGCATGCCAAGAAGTATTACCTGGAAATGTTGGATAAAGGTATGAAGCCCTGTTTGAGGACCAGCTTGGCTTTGTTCAACGGCATTGCTTGCCTGGAGTCATTGGAGAATGGCGAGGAGTTTCTTGAGCAGGTAAAGCCAAAGGGGGTCTTGCCTGATGTCGGTGAAGGCCATTTCACTGAGCTAATGAAGGCATTGAAGTTGTATGATGATCTCCAAAAGAGAACCTCGGACAAAGATATTCAAGAAGTTATCTGCAGGGTCACATTAGATGGTTTCAAGAACCAGTCATCGAAAATGTTCTATGCTATGGTAGAAGATGGCAATGTAGGCGAGGCAATGGATCTCTTTCAATCATCAGTTGAGAGTCGCATCAATCCCATGGTCATAGTTCACACTGCTGTTATTGAAGCCTACATCAAATGTAACAATAACAAGGGTGCTCTCCAGACCTACCTGGACATGTTAGTTGCTGGACTTGCACCTAACTCCTACATTTACAGTGTTTTGATCAAGGGACTCTCTGTTGATGCCAGCTACTTTAAAGATGCCAAGAAATATTTGGTTGAGATGCTGGACAAGGGCATGCATCCAAATGTTGCTACCTACACTGCAGTGTTAGAGGGTTTTGCAAGGCAGGAGGACAAGAAAGCTGAGGAAGAGGGAAAAGAGTTTCTGGAGGTCATGATGGCTAAGGGGTTTGTCCCTGATACCGACGCTGTGAGGGAGGTGTTAAAGGGCAGACCAACACCTGTAATTAGCAGGGTCATGAGCATTATCCTTTCCAAGTTGGAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0006066 GO:0006464 GO:0006486 GO:0006493 GO:0006497 GO:0006505 GO:0006506 GO:0006629 GO:0006643 GO:0006644 GO:0006650 GO:0006661 GO:0006664 GO:0006720 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0008610 GO:0008654 GO:0009058 GO:0009059 GO:0009100 GO:0009101 GO:0009247 GO:0009987 GO:0012505 GO:0016020 GO:0016093 GO:0019348 GO:0019538 GO:0019637 GO:0030234 GO:0031501 GO:0031984 GO:0032991 GO:0033185 GO:0034645 GO:0035268 GO:0035269 GO:0036211 GO:0042157 GO:0042158 GO:0042175 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043413 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044260 GO:0044267 GO:0044281 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0045017 GO:0046467 GO:0046474 GO:0046486 GO:0046488 GO:0050790 GO:0065007 GO:0065009 GO:0070085 GO:0071704 GO:0090407 GO:0097502 GO:0098772 GO:0098827 GO:1901135 GO:1901137 GO:1901564 GO:1901566 GO:1901576 GO:1901615 GO:1902494 GO:1903509 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko00510 ko00563 ko01100 map00510 map00563 map01100

Pfam Domains

Protein Families

DPM2

Protein Analysis

595

Amino Acids

66.76

Weight (kDa)

4.92

Isoelectric Point (pI)

32.07

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	72 - 122	5.7e-09	PPR repeat family
PPR_2	PF13041	459 - 504	1.4e-07	PPR repeat family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000870)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G06050 AT2G06050 AT2G06050
fragaria_vesca	FvH4_1g08451 FvH4_1g08452 FvH4_1g08453 FvH4_1g08454 FvH4_1g08510 FvH4_1g08510 FvH4_1g08510 FvH4_1g08510
malus_domestica	MD00G1142600.v1.1 MD02G1089100.v1.1 MD12G1067300.v1.1 MD15G1216200.v1.1
prunus_persica	Prupe.7G200800_v2.0.a1
pyrus_communis	pycom02g07130 pycom15g19180
rosa_chinensis	RchiOBHm_Chr2g0094561 RchiOBHm_Chr2g0094611 RchiOBHm_Chr2g0094631 RchiOBHm_Chr2g0094641 RchiOBHm_Chr2g0150041 RchiOBHm_Chr7g0211621 RchiOBHm_Chr7g0230281
rosa_laevigata	RLG00000002990 RLG00000016504 RLG00000016506 RLG00000016507 RLG00000020462
rosa_multiflora	Rmu_co8133296.1_g000001 Rmu_co8390375.1_g000001 Rmu_sc0003760.1_g000017 Rmu_sc0004232.1_g000012 Rmu_sc0004359.1_g000033 Rmu_sc0004359.1_g000036 Rmu_sc0006422.1_g000001 Rmu_sc0009445.1_g000018 Rmu_sc0017068.1_g000001
rosa_roxburghii	Rroxscaffold_2G00097490 Rroxscaffold_2G00147030 Rroxscaffold_2G00147040 Rroxscaffold_2G00147050 Rroxscaffold_3G00247670
rosa_rugosa	Rorug02G0045400 Rorug02G0045400 Rorug02G0045600 Rorug02G0045700 Rorug02G0418000 Rorug07G0126300
rosa_samantha	Rh2AG093100 Rh2BG093400 Rh2BG093700 Rh2BG489500 Rh2CG095800 Rh2CG096000 Rh2DG092200 Rh2DG092400 Rh7AG259000 Rh7BG253300 Rh7CG276100 Rh7DG266600
rosa_wichuraiana	Rw0G003550 Rw0G003560 Rw2G038940 Rw7G022140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	2 cut(s)	236, 845
Acc36I	ACCTGC	1 cut(s)	1111
AccB1I	GGYRCC	1 cut(s)	211
AccBSI	CCGCTC	2 cut(s)	35, 58
AccII	CGCG	3 cut(s)	492, 694, 962
AciI	CCGC	7 cut(s)	5, 8, 33, 58, 236, 261, 490
AclWI	GGATC	3 cut(s)	932, 971, 1341
AcoI	YGGCCR	2 cut(s)	59, 487
AcuI	CTGAAG	1 cut(s)	914
AfaI	GTAC	2 cut(s)	84, 771
AfiI	CCNNNNNNNGG	4 cut(s)	270, 580, 1047, 1151
AflII	CTTAAG	1 cut(s)	632
AflIII	ACRYGT	3 cut(s)	303, 640, 1452
AgsI	TTSAA	9 cut(s)	25, 298, 613, 1069, 1189, 1235, 1270, 1343, 1400
AjnI	CCWGG	5 cut(s)	51, 215, 1011, 1083, 1446
AjuI	GAANNNNNNNTTGG	2 cut(s)	158, 190
AleI	CACNNNNGTG	1 cut(s)	1604
AluBI	AGCT	8 cut(s)	110, 802, 917, 936, 1056, 1174, 1527, 1643
AluI	AGCT	8 cut(s)	110, 802, 917, 936, 1056, 1174, 1527, 1643
Alw21I	GWGCWC	4 cut(s)	249, 573, 804, 1435
Alw26I	GTCTC	4 cut(s)	194, 261, 452, 666
AlwI	GGATC	3 cut(s)	932, 971, 1341
AlwNI	CAGNNNCTG	2 cut(s)	675, 939
AoxI	GGCC	7 cut(s)	59, 186, 357, 487, 504, 582, 1159
ApeKI	GCWGC	1 cut(s)	445
Asp700I	GAANNNNTTC	1 cut(s)	1289
AspLEI	GCGC	3 cut(s)	494, 525, 694
AspS9I	GGNCC	4 cut(s)	186, 273, 358, 1050
AsuHPI	GGTGA	3 cut(s)	217, 919, 1166
AvaII	GGWCC	2 cut(s)	273, 1050
BaeGI	GKGCMC	1 cut(s)	216
BanI	GGYRCC	1 cut(s)	211
BanII	GRGCYC	2 cut(s)	783, 804
BbsI	GAAGAC	1 cut(s)	687
Bbv12I	GWGCWC	4 cut(s)	249, 573, 804, 1435
BbvCI	CCTCAGC	2 cut(s)	513, 1644
BbvI	GCAGC	1 cut(s)	457
BccI	CCATC	8 cut(s)	127, 149, 586, 613, 616, 1256, 1304, 1672
BceAI	ACGGC	2 cut(s)	329, 1087
BciT130I	CCWGG	5 cut(s)	53, 217, 1013, 1085, 1448
BciVI	GTATCC	1 cut(s)	814
BclI	TGATCA	1 cut(s)	1500
BcoDI	GTCTC	4 cut(s)	194, 261, 452, 666
BfmI	CTRYAG	2 cut(s)	1246, 1602
BfrI	CTTAAG	1 cut(s)	632
BfuAI	ACCTGC	1 cut(s)	1111
BfuI	GTATCC	1 cut(s)	814
BisI	GCNGC	5 cut(s)	6, 59, 261, 446, 490
BlsI	GCNGC	5 cut(s)	7, 60, 262, 447, 491
BmcAI	AGTACT	1 cut(s)	84
Bme1390I	CCNGG	5 cut(s)	53, 217, 1013, 1085, 1448
Bme18I	GGWCC	2 cut(s)	273, 1050
BmgT120I	GGNCC	4 cut(s)	186, 273, 358, 1050
BmiI	GGNNCC	3 cut(s)	187, 213, 324
BmrFI	CCNGG	5 cut(s)	53, 217, 1013, 1085, 1448
BmsI	GCATC	8 cut(s)	271, 652, 877, 1371, 1510, 1528, 1551, 1588
BpiI	GAAGAC	1 cut(s)	687
BplI	GAGNNNNNCTC	2 cut(s)	874, 906
BpmI	CTGGAG	5 cut(s)	74, 557, 1106, 1421, 1688
Bpu10I	CCTNAGC	3 cut(s)	513, 1644, 1683
BpuEI	CTTGAG	1 cut(s)	1136
BsaAI	YACGTR	1 cut(s)	773
BsaI	GGTCTC	1 cut(s)	194
BsaJI	CCNNGG	9 cut(s)	102, 189, 215, 216, 276, 507, 585, 1218, 1371
BsaWI	WCCGGW	1 cut(s)	64
BsaXI	ACNNNNNCTCC	2 cut(s)	131, 161
Bsc4I	CCNNNNNNNGG	4 cut(s)	270, 580, 1047, 1151
Bse1I	ACTGG	1 cut(s)	1276
Bse3DI	GCAATG	3 cut(s)	1074, 1321, 1335
BseBI	CCWGG	5 cut(s)	53, 217, 1013, 1085, 1448
BseDI	CCNNGG	9 cut(s)	102, 189, 215, 216, 276, 507, 585, 1218, 1371
BseGI	GGATG	5 cut(s)	160, 286, 667, 861, 1579
BseLI	CCNNNNNNNGG	4 cut(s)	270, 580, 1047, 1151
BseMI	GCAATG	3 cut(s)	1074, 1321, 1335
BseMII	CTCAG	6 cut(s)	301, 486, 504, 725, 1161, 1635
BseNI	ACTGG	1 cut(s)	1276
BseRI	GAGGAG	5 cut(s)	470, 530, 533, 602, 1121
BseSI	GKGCMC	1 cut(s)	216
BseXI	GCAGC	1 cut(s)	457
BseYI	CCCAGC	1 cut(s)	932
BsgI	GTGCAG	1 cut(s)	925
Bsh1236I	CGCG	3 cut(s)	492, 694, 962
BshFI	GGCC	7 cut(s)	61, 188, 359, 489, 506, 584, 1161
BshNI	GGYRCC	1 cut(s)	211
BsiHKAI	GWGCWC	4 cut(s)	249, 573, 804, 1435
BsiSI	CCGG	2 cut(s)	65, 264
BslFI	GGGAC	2 cut(s)	1521, 1679
BslI	CCNNNNNNNGG	4 cut(s)	270, 580, 1047, 1151
BsmAI	GTCTC	4 cut(s)	194, 261, 452, 666
BsmFI	GGGAC	2 cut(s)	1521, 1679
BsmI	GAATGC	4 cut(s)	334, 447, 694, 746
BsnI	GGCC	7 cut(s)	61, 188, 359, 489, 506, 584, 1161
Bso31I	GGTCTC	1 cut(s)	194
Bsp1286I	GDGCHC	6 cut(s)	216, 249, 573, 783, 804, 1435
Bsp143I	GATC	5 cut(s)	924, 976, 1201, 1333, 1500
Bsp19I	CCATGG	1 cut(s)	1371
Bsp68I	TCGCGA	1 cut(s)	962
BspACI	CCGC	7 cut(s)	5, 8, 33, 58, 236, 261, 490
BspANI	GGCC	7 cut(s)	61, 188, 359, 489, 506, 584, 1161
BspCNI	CTCAG	6 cut(s)	300, 487, 505, 726, 1162, 1636
BspFNI	CGCG	3 cut(s)	492, 694, 962
BspHI	TCATGA	2 cut(s)	1674, 1758
BspLI	GGNNCC	3 cut(s)	187, 213, 324
BspMAI	CTGCAG	2 cut(s)	1250, 1606
BspMI	ACCTGC	1 cut(s)	1111
BspPI	GGATC	3 cut(s)	932, 971, 1341
BspT107I	GGYRCC	1 cut(s)	211
BspTI	CTTAAG	1 cut(s)	632
BspTNI	GGTCTC	1 cut(s)	194
BsrBI	CCGCTC	2 cut(s)	35, 58
BsrDI	GCAATG	3 cut(s)	1074, 1321, 1335
BsrI	ACTGG	1 cut(s)	1276
BssECI	CCNNGG	9 cut(s)	102, 189, 215, 216, 276, 507, 585, 1218, 1371
BssMI	GATC	5 cut(s)	924, 976, 1201, 1333, 1500
BssT1I	CCWWGG	3 cut(s)	189, 276, 1371
Bst2UI	CCWGG	5 cut(s)	53, 217, 1013, 1085, 1448
Bst4CI	ACNGT	2 cut(s)	677, 1493
Bst6I	CTCTTC	2 cut(s)	44, 1644
BstAFI	CTTAAG	1 cut(s)	632
BstAPI	GCANNNNNTGC	1 cut(s)	1080
BstBAI	YACGTR	1 cut(s)	773
BstC8I	GCNNGC	5 cut(s)	696, 996, 1081, 1525, 1577
BstDEI	CTNAG	7 cut(s)	287, 495, 513, 734, 1170, 1644, 1683
BstDSI	CCRYGG	1 cut(s)	1371
BstENI	CCTNNNNNAGG	1 cut(s)	1045
BstF5I	GGATG	5 cut(s)	160, 286, 667, 861, 1579
BstFNI	CGCG	3 cut(s)	492, 694, 962
BstHHI	GCGC	3 cut(s)	494, 525, 694
BstKTI	GATC	5 cut(s)	927, 979, 1204, 1336, 1503
BstMAI	GTCTC	4 cut(s)	194, 261, 452, 666
BstMBI	GATC	5 cut(s)	924, 976, 1201, 1333, 1500
BstMWI	GCNNNNNNNGC	7 cut(s)	14, 489, 808, 1080, 1126, 1320, 1469
BstNI	CCWGG	5 cut(s)	53, 217, 1013, 1085, 1448
BstNSI	RCATGY	5 cut(s)	307, 644, 998, 1456, 1579
BstSCI	CCNGG	5 cut(s)	51, 215, 1011, 1083, 1446
BstSFI	CTRYAG	2 cut(s)	1246, 1602
BstSLI	GKGCMC	1 cut(s)	216
BstSNI	TACGTA	1 cut(s)	773
BstUI	CGCG	3 cut(s)	492, 694, 962
BstV1I	GCAGC	1 cut(s)	457
BstV2I	GAAGAC	1 cut(s)	687
BstX2I	RGATCY	1 cut(s)	1333
BstYI	RGATCY	1 cut(s)	1333
BsuI	GTATCC	1 cut(s)	814
BsuRI	GGCC	7 cut(s)	61, 188, 359, 489, 506, 584, 1161
BtgI	CCRYGG	1 cut(s)	1371
BtgZI	GCGATG	1 cut(s)	943
BtsCI	GGATG	5 cut(s)	160, 286, 667, 861, 1579
BtsI	GCAGTG	5 cut(s)	231, 477, 1386, 1599, 1611
BtsIMutI	CAGTG	8 cut(s)	231, 477, 731, 1167, 1386, 1498, 1599, 1611
BtuMI	TCGCGA	1 cut(s)	962
BveI	ACCTGC	1 cut(s)	1111
Cac8I	GCNNGC	5 cut(s)	696, 996, 1081, 1525, 1577
CaiI	CAGNNNCTG	2 cut(s)	675, 939
CciI	TCATGA	2 cut(s)	1674, 1758
CfoI	GCGC	3 cut(s)	494, 525, 694
Cfr13I	GGNCC	4 cut(s)	186, 273, 358, 1050
CseI	GACGC	3 cut(s)	23, 973, 1715
Csp6I	GTAC	2 cut(s)	83, 770
CviQI	GTAC	2 cut(s)	83, 770
DdeI	CTNAG	7 cut(s)	287, 495, 513, 734, 1170, 1644, 1683
DpnI	GATC	5 cut(s)	926, 978, 1203, 1335, 1502
DpnII	GATC	5 cut(s)	924, 976, 1201, 1333, 1500
DraI	TTTAAA	1 cut(s)	1534
DrdI	GACNNNNNNGTC	2 cut(s)	236, 845
DseDI	GACNNNNNNGTC	2 cut(s)	236, 845
EaeI	YGGCCR	2 cut(s)	59, 487
Eam1104I	CTCTTC	2 cut(s)	44, 1644
EarI	CTCTTC	2 cut(s)	44, 1644
EciI	GGCGGA	1 cut(s)	23
Ecl136II	GAGCTC	1 cut(s)	802
Eco105I	TACGTA	1 cut(s)	773
Eco130I	CCWWGG	3 cut(s)	189, 276, 1371
Eco24I	GRGCYC	2 cut(s)	783, 804
Eco31I	GGTCTC	1 cut(s)	194
Eco47I	GGWCC	2 cut(s)	273, 1050
Eco53kI	GAGCTC	1 cut(s)	802
Eco57I	CTGAAG	1 cut(s)	914
EcoICRI	GAGCTC	1 cut(s)	802
EcoNI	CCTNNNNNAGG	1 cut(s)	1045
EcoO109I	RGGNCCY	1 cut(s)	358
EcoRII	CCWGG	5 cut(s)	51, 215, 1011, 1083, 1446
EcoT14I	CCWWGG	3 cut(s)	189, 276, 1371
EcoT22I	ATGCAT	1 cut(s)	1581
EcoT38I	GRGCYC	2 cut(s)	783, 804
ErhI	CCWWGG	3 cut(s)	189, 276, 1371
FalI	AAGNNNNNCTT	2 cut(s)	1124, 1156
FaqI	GGGAC	2 cut(s)	1521, 1679
FauNDI	CATATG	2 cut(s)	340, 909
FbaI	TGATCA	1 cut(s)	1500
Fnu4HI	GCNGC	5 cut(s)	6, 59, 261, 446, 490
FokI	GGATG	5 cut(s)	167, 293, 674, 848, 1566
FriOI	GRGCYC	2 cut(s)	783, 804
Fsp4HI	GCNGC	5 cut(s)	6, 59, 261, 446, 490
GlaI	GCGC	3 cut(s)	493, 524, 693
GluI	GCNGC	5 cut(s)	6, 59, 261, 446, 490
GsaI	CCCAGC	1 cut(s)	936
GsuI	CTGGAG	5 cut(s)	74, 557, 1106, 1421, 1688
HaeIII	GGCC	7 cut(s)	61, 188, 359, 489, 506, 584, 1161
HapII	CCGG	2 cut(s)	65, 264
HgaI	GACGC	3 cut(s)	23, 973, 1715
HhaI	GCGC	3 cut(s)	494, 525, 694
Hin6I	GCGC	3 cut(s)	492, 523, 692
HinP1I	GCGC	3 cut(s)	492, 523, 692
HinfI	GANTC	5 cut(s)	702, 728, 1088, 1357, 1509
HpaII	CCGG	2 cut(s)	65, 264
HphI	GGTGA	3 cut(s)	217, 919, 1166
Hpy166II	GTNNAC	2 cut(s)	99, 1384
Hpy188I	TCNGA	7 cut(s)	89, 114, 290, 619, 707, 894, 1222
Hpy8I	GTNNAC	2 cut(s)	99, 1384
Hpy99I	CGWCG	4 cut(s)	17, 842, 967, 1709
HpyAV	CCTTC	6 cut(s)	473, 571, 643, 889, 1151, 1174
HpyCH4III	ACNGT	2 cut(s)	677, 1493
HpyCH4IV	ACGT	1 cut(s)	772
HpyCH4V	TGCA	9 cut(s)	76, 445, 746, 942, 1248, 1472, 1579, 1604, 1622
HpyF10VI	GCNNNNNNNGC	7 cut(s)	14, 489, 808, 1080, 1126, 1320, 1469
HpyF3I	CTNAG	7 cut(s)	287, 495, 513, 734, 1170, 1644, 1683
HpySE526I	ACGT	1 cut(s)	772
HspAI	GCGC	3 cut(s)	492, 523, 692
Ksp22I	TGATCA	1 cut(s)	1500
Kzo9I	GATC	5 cut(s)	924, 976, 1201, 1333, 1500
LmnI	GCTCC	5 cut(s)	55, 244, 520, 576, 941
Lsp1109I	GCAGC	1 cut(s)	457
LweI	GCATC	8 cut(s)	271, 652, 877, 1371, 1510, 1528, 1551, 1588
MaeII	ACGT	1 cut(s)	772
MaeIII	GTNAC	3 cut(s)	223, 1252, 1415
MalI	GATC	5 cut(s)	926, 978, 1203, 1335, 1502
MbiI	CCGCTC	2 cut(s)	35, 58
MboI	GATC	5 cut(s)	924, 976, 1201, 1333, 1500
MboII	GAAGA	5 cut(s)	31, 394, 692, 1319, 1661
MflI	RGATCY	1 cut(s)	1333
MhlI	GDGCHC	6 cut(s)	216, 249, 573, 783, 804, 1435
MluCI	AATT	6 cut(s)	20, 391, 412, 949, 982, 1746
MlyI	GAGTC	3 cut(s)	1097, 1366, 1503
MmeI	TCCRAC	5 cut(s)	411, 456, 798, 1002, 1761
Mph1103I	ATGCAT	1 cut(s)	1581
MroXI	GAANNNNTTC	1 cut(s)	1289
MseI	TTAA	5 cut(s)	633, 759, 807, 1533, 1724
MslI	CAYNNNNRTG	2 cut(s)	1584, 1604
MspCI	CTTAAG	1 cut(s)	632
MspI	CCGG	2 cut(s)	65, 264
MspR9I	CCNGG	5 cut(s)	53, 217, 1013, 1085, 1448
Mva1269I	GAATGC	4 cut(s)	334, 447, 694, 746
MvaI	CCWGG	5 cut(s)	53, 217, 1013, 1085, 1448
MvnI	CGCG	3 cut(s)	492, 694, 962
MwoI	GCNNNNNNNGC	7 cut(s)	14, 489, 808, 1080, 1126, 1320, 1469
NcoI	CCATGG	1 cut(s)	1371
NdeI	CATATG	2 cut(s)	340, 909
NdeII	GATC	5 cut(s)	924, 976, 1201, 1333, 1500
NlaIV	GGNNCC	3 cut(s)	187, 213, 324
NmeAIII	GCCGAG	2 cut(s)	532, 610
NmuCI	GTSAC	2 cut(s)	223, 1252
NruI	TCGCGA	1 cut(s)	962
NsiI	ATGCAT	1 cut(s)	1581
NspI	RCATGY	5 cut(s)	307, 644, 998, 1456, 1579
OliI	CACNNNNGTG	1 cut(s)	1604
PaeI	GCATGC	2 cut(s)	998, 1579
PagI	TCATGA	2 cut(s)	1674, 1758
PasI	CCCWGGG	1 cut(s)	216
PciI	ACATGT	3 cut(s)	303, 640, 1452
PctI	GAATGC	4 cut(s)	334, 447, 694, 746
PdmI	GAANNNNTTC	1 cut(s)	1289
PfeI	GAWTC	2 cut(s)	702, 728
PkrI	GCNGC	5 cut(s)	7, 60, 262, 447, 491
PleI	GAGTC	3 cut(s)	1096, 1365, 1503
PpsI	GAGTC	3 cut(s)	1096, 1365, 1503
Ppu21I	YACGTR	1 cut(s)	773
PscI	ACATGT	3 cut(s)	303, 640, 1452
Psp124BI	GAGCTC	1 cut(s)	804
Psp6I	CCWGG	5 cut(s)	51, 215, 1011, 1083, 1446
PspFI	CCCAGC	1 cut(s)	932
PspGI	CCWGG	5 cut(s)	51, 215, 1011, 1083, 1446
PspN4I	GGNNCC	3 cut(s)	187, 213, 324
PspPI	GGNCC	4 cut(s)	186, 273, 358, 1050
PstI	CTGCAG	2 cut(s)	1250, 1606
PstNI	CAGNNNCTG	2 cut(s)	675, 939
PsuI	RGATCY	1 cut(s)	1333
RruI	TCGCGA	1 cut(s)	962
RsaI	GTAC	2 cut(s)	84, 771
RsaNI	GTAC	2 cut(s)	83, 770
RseI	CAYNNNNRTG	2 cut(s)	1584, 1604
SacI	GAGCTC	1 cut(s)	804
SaqAI	TTAA	5 cut(s)	633, 759, 807, 1533, 1724
SatI	GCNGC	5 cut(s)	6, 59, 261, 446, 490
Sau3AI	GATC	5 cut(s)	924, 976, 1201, 1333, 1500
Sau96I	GGNCC	4 cut(s)	186, 273, 358, 1050
ScaI	AGTACT	1 cut(s)	84
SchI	GAGTC	3 cut(s)	1097, 1366, 1503
ScrFI	CCNGG	5 cut(s)	53, 217, 1013, 1085, 1448
SduI	GDGCHC	6 cut(s)	216, 249, 573, 783, 804, 1435
SfaNI	GCATC	8 cut(s)	271, 652, 877, 1371, 1510, 1528, 1551, 1588
SfcI	CTRYAG	2 cut(s)	1246, 1602
SinI	GGWCC	2 cut(s)	273, 1050
SmiMI	CAYNNNNRTG	2 cut(s)	1584, 1604
SmlI	CTYRAG	2 cut(s)	632, 1115
SmoI	CTYRAG	2 cut(s)	632, 1115
SnaBI	TACGTA	1 cut(s)	773
SphI	GCATGC	2 cut(s)	998, 1579
Sse9I	AATT	6 cut(s)	20, 391, 412, 949, 982, 1746
SsiI	CCGC	7 cut(s)	5, 8, 33, 58, 236, 261, 490
SspI	AATATT	1 cut(s)	1550
SstI	GAGCTC	1 cut(s)	804
StyD4I	CCNGG	5 cut(s)	51, 215, 1011, 1083, 1446
StyI	CCWWGG	3 cut(s)	189, 276, 1371
TaaI	ACNGT	2 cut(s)	677, 1493
TaiI	ACGT	1 cut(s)	775
TaqI	TCGA	2 cut(s)	750, 1283
TasI	AATT	6 cut(s)	20, 391, 412, 949, 982, 1746
TatI	WGTACW	1 cut(s)	82
TauI	GCSGC	4 cut(s)	8, 61, 263, 492
TfiI	GAWTC	2 cut(s)	702, 728
Tru1I	TTAA	5 cut(s)	633, 759, 807, 1533, 1724
Tru9I	TTAA	5 cut(s)	633, 759, 807, 1533, 1724
TscAI	CASTG	8 cut(s)	238, 477, 738, 1174, 1393, 1498, 1606, 1611
TseFI	GTSAC	2 cut(s)	223, 1252
TseI	GCWGC	1 cut(s)	445
Tsp45I	GTSAC	2 cut(s)	223, 1252
TspDTI	ATGAA	6 cut(s)	179, 662, 741, 976, 1049, 1193
TspRI	CASTG	8 cut(s)	238, 477, 738, 1174, 1393, 1498, 1606, 1611
Vha464I	CTTAAG	1 cut(s)	632
VpaK11BI	GGWCC	2 cut(s)	273, 1050
XagI	CCTNNNNNAGG	1 cut(s)	1045
XceI	RCATGY	5 cut(s)	307, 644, 998, 1456, 1579
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1549
XmnI	GAANNNNTTC	1 cut(s)	1289
ZrmI	AGTACT	1 cut(s)	84
Zsp2I	ATGCAT	1 cut(s)	1581

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.