Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7B

Orthogroup ID

OG0000870

Physical Location & Seq

Genomic Coordinates Forward (+)

22990933 .. 22993448

Gene Structure 2516 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7BG253300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 354 bp

ATGGGGGATTTTTCATCAGAAGGACTCACCCTGTTCTCTCCTTACAAGATGGGCAGGCTCAATCTCTCTCACAGAGCTTCGATTGCATTCTTCAGCAGTAAAATGATCATTTTCTTACCTGTTGTGTCGATCAATGTTCTAGTTTACCAACCTAGTGGGCGTTCGCCGATTTCTTCAACCAACAATCCCATTTCAAATAGATGGAAAATTCTGTTGCCAGATGGGTCTCAAGAGACTTATGCTCAGCCTCGACGCCTCGAAACCCATGAAATACCTCAGATTGTTGAGCAGTATCGCCACGCTGCCTTAAATGCTATTCGAGCAGGTAAGGAAATGTACGTGGATAAACTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000302 GO:0001101 GO:0003006 GO:0003674 GO:0003824 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005777 GO:0006082 GO:0006629 GO:0006631 GO:0006633 GO:0006950 GO:0006979 GO:0007275 GO:0008150 GO:0008152 GO:0008610 GO:0009058 GO:0009605 GO:0009607 GO:0009620 GO:0009694 GO:0009695 GO:0009791 GO:0009908 GO:0009987 GO:0010035 GO:0010193 GO:0010817 GO:0016053 GO:0016491 GO:0016627 GO:0016628 GO:0016629 GO:0019752 GO:0022414 GO:0031407 GO:0031408 GO:0032501 GO:0032502 GO:0032787 GO:0042221 GO:0042445 GO:0042446 GO:0042493 GO:0042579 GO:0042802 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046394 GO:0046677 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048466 GO:0048608 GO:0048731 GO:0048827 GO:0048856 GO:0050896 GO:0051704 GO:0051707 GO:0055114 GO:0061458 GO:0065007 GO:0065008 GO:0071704 GO:0072330 GO:0090567 GO:0099402 GO:1901576 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko00592 ko01100 ko01110 map00592 map01100 map01110

Pfam Domains

Protein Families

Oxidored_FMN

Protein Analysis

117

Amino Acids

13.24

Weight (kDa)

9.63

Isoelectric Point (pI)

57.22

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000870)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G06050 AT2G06050 AT2G06050
fragaria_vesca	FvH4_1g08451 FvH4_1g08452 FvH4_1g08453 FvH4_1g08454 FvH4_1g08510 FvH4_1g08510 FvH4_1g08510 FvH4_1g08510
malus_domestica	MD00G1142600.v1.1 MD02G1089100.v1.1 MD12G1067300.v1.1 MD15G1216200.v1.1
prunus_persica	Prupe.7G200800_v2.0.a1
pyrus_communis	pycom02g07130 pycom15g19180
rosa_chinensis	RchiOBHm_Chr2g0094561 RchiOBHm_Chr2g0094611 RchiOBHm_Chr2g0094631 RchiOBHm_Chr2g0094641 RchiOBHm_Chr2g0150041 RchiOBHm_Chr7g0211621 RchiOBHm_Chr7g0230281
rosa_laevigata	RLG00000002990 RLG00000016504 RLG00000016506 RLG00000016507 RLG00000020462
rosa_multiflora	Rmu_co8133296.1_g000001 Rmu_co8390375.1_g000001 Rmu_sc0003760.1_g000017 Rmu_sc0004232.1_g000012 Rmu_sc0004359.1_g000033 Rmu_sc0004359.1_g000036 Rmu_sc0006422.1_g000001 Rmu_sc0009445.1_g000018 Rmu_sc0017068.1_g000001
rosa_roxburghii	Rroxscaffold_2G00097490 Rroxscaffold_2G00147030 Rroxscaffold_2G00147040 Rroxscaffold_2G00147050 Rroxscaffold_3G00247670
rosa_rugosa	Rorug02G0045400 Rorug02G0045400 Rorug02G0045600 Rorug02G0045700 Rorug02G0418000 Rorug07G0126300
rosa_samantha	Rh2AG093100 Rh2BG093400 Rh2BG093700 Rh2BG489500 Rh2CG095800 Rh2CG096000 Rh2DG092200 Rh2DG092400 Rh7AG259000 Rh7BG253300 Rh7CG276100 Rh7DG266600
rosa_wichuraiana	Rw0G003550 Rw0G003560 Rw2G038940 Rw7G022140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	314
AcsI	RAATTY	1 cut(s)	207
AcuI	CTGAAG	1 cut(s)	76
AcyI	GRCGYC	1 cut(s)	253
AfaI	GTAC	1 cut(s)	338
AgsI	TTSAA	2 cut(s)	177, 195
AluBI	AGCT	1 cut(s)	77
AluI	AGCT	1 cut(s)	77
Alw26I	GTCTC	2 cut(s)	227, 231
ApeKI	GCWGC	1 cut(s)	302
ApoI	RAATTY	1 cut(s)	207
AsuHPI	GGTGA	1 cut(s)	19
BbvI	GCAGC	1 cut(s)	289
BccI	CCATC	3 cut(s)	43, 195, 215
BclI	TGATCA	1 cut(s)	105
BcoDI	GTCTC	2 cut(s)	227, 231
BfaI	CTAG	2 cut(s)	140, 153
BfuAI	ACCTGC	1 cut(s)	314
BisI	GCNGC	1 cut(s)	303
BlpI	GCTNAGC	1 cut(s)	243
BlsI	GCNGC	1 cut(s)	304
Bpu1102I	GCTNAGC	1 cut(s)	243
BpuEI	CTTGAG	1 cut(s)	213
BsaAI	YACGTR	1 cut(s)	340
BsaHI	GRCGYC	1 cut(s)	253
BsaI	GGTCTC	1 cut(s)	231
BseMII	CTCAG	2 cut(s)	257, 290
BseXI	GCAGC	1 cut(s)	289
BsmAI	GTCTC	2 cut(s)	227, 231
BsmI	GAATGC	1 cut(s)	86
Bso31I	GGTCTC	1 cut(s)	231
Bsp143I	GATC	2 cut(s)	105, 129
Bsp1720I	GCTNAGC	1 cut(s)	243
BspCNI	CTCAG	2 cut(s)	256, 289
BspMI	ACCTGC	1 cut(s)	314
BspTNI	GGTCTC	1 cut(s)	231
BssMI	GATC	2 cut(s)	105, 129
BssNI	GRCGYC	1 cut(s)	253
BstACI	GRCGYC	1 cut(s)	253
BstBAI	YACGTR	1 cut(s)	340
BstC8I	GCNNGC	1 cut(s)	56
BstDEI	CTNAG	2 cut(s)	243, 276
BstKTI	GATC	2 cut(s)	108, 132
BstMAI	GTCTC	2 cut(s)	227, 231
BstMBI	GATC	2 cut(s)	105, 129
BstMWI	GCNNNNNNNGC	3 cut(s)	83, 311, 320
BstV1I	GCAGC	1 cut(s)	289
BstXI	CCANNNNNNTGG	1 cut(s)	155
BveI	ACCTGC	1 cut(s)	314
Cac8I	GCNNGC	1 cut(s)	56
CseI	GACGC	1 cut(s)	261
Csp6I	GTAC	1 cut(s)	337
CviAII	CATG	1 cut(s)	266
CviJI	RGCY	3 cut(s)	58, 77, 247
CviKI_1	RGCY	3 cut(s)	58, 77, 247
CviQI	GTAC	1 cut(s)	337
DdeI	CTNAG	2 cut(s)	243, 276
DpnI	GATC	2 cut(s)	107, 131
DpnII	GATC	2 cut(s)	105, 129
Eco31I	GGTCTC	1 cut(s)	231
Eco57I	CTGAAG	1 cut(s)	76
FaeI	CATG	1 cut(s)	269
FaiI	YATR	3 cut(s)	240, 267, 352
FatI	CATG	1 cut(s)	265
FbaI	TGATCA	1 cut(s)	105
Fnu4HI	GCNGC	1 cut(s)	303
Fsp4HI	GCNGC	1 cut(s)	303
FspBI	CTAG	2 cut(s)	140, 153
GluI	GCNGC	1 cut(s)	303
HgaI	GACGC	1 cut(s)	261
Hin1I	GRCGYC	1 cut(s)	253
Hin1II	CATG	1 cut(s)	269
HinfI	GANTC	1 cut(s)	24
HphI	GGTGA	1 cut(s)	19
Hpy166II	GTNNAC	1 cut(s)	145
Hpy188I	TCNGA	2 cut(s)	19, 279
Hpy188III	TCNNGA	1 cut(s)	230
Hpy8I	GTNNAC	1 cut(s)	145
Hpy99I	CGWCG	1 cut(s)	255
HpyAV	CCTTC	1 cut(s)	14
HpyCH4IV	ACGT	1 cut(s)	339
HpyCH4V	TGCA	1 cut(s)	86
HpyF10VI	GCNNNNNNNGC	3 cut(s)	83, 311, 320
HpyF3I	CTNAG	2 cut(s)	243, 276
HpySE526I	ACGT	1 cut(s)	339
Hsp92I	GRCGYC	1 cut(s)	253
Hsp92II	CATG	1 cut(s)	269
Ksp22I	TGATCA	1 cut(s)	105
Kzo9I	GATC	2 cut(s)	105, 129
LpnPI	CCDG	5 cut(s)	40, 44, 132, 231, 309
Lsp1109I	GCAGC	1 cut(s)	289
MaeI	CTAG	2 cut(s)	140, 153
MaeII	ACGT	1 cut(s)	339
MalI	GATC	2 cut(s)	107, 131
MboI	GATC	2 cut(s)	105, 129
MboII	GAAGA	2 cut(s)	82, 165
MluCI	AATT	1 cut(s)	207
MlyI	GAGTC	1 cut(s)	18
MnlI	CCTC	3 cut(s)	258, 266, 285
MseI	TTAA	1 cut(s)	308
Mva1269I	GAATGC	1 cut(s)	86
MwoI	GCNNNNNNNGC	3 cut(s)	83, 311, 320
NdeII	GATC	2 cut(s)	105, 129
NlaIII	CATG	1 cut(s)	269
PctI	GAATGC	1 cut(s)	86
PkrI	GCNGC	1 cut(s)	304
PleI	GAGTC	1 cut(s)	18
PpsI	GAGTC	1 cut(s)	18
Ppu21I	YACGTR	1 cut(s)	340
RsaI	GTAC	1 cut(s)	338
RsaNI	GTAC	1 cut(s)	337
SaqAI	TTAA	1 cut(s)	308
SatI	GCNGC	1 cut(s)	303
Sau3AI	GATC	2 cut(s)	105, 129
SchI	GAGTC	1 cut(s)	18
SetI	ASST	6 cut(s)	79, 121, 154, 277, 328, 342
SmlI	CTYRAG	1 cut(s)	228
SmoI	CTYRAG	1 cut(s)	228
Sse9I	AATT	1 cut(s)	207
SspMI	CTAG	2 cut(s)	140, 153
TaiI	ACGT	1 cut(s)	342
TaqI	TCGA	5 cut(s)	80, 128, 250, 258, 319
TasI	AATT	1 cut(s)	207
Tru1I	TTAA	1 cut(s)	308
Tru9I	TTAA	1 cut(s)	308
TseI	GCWGC	1 cut(s)	302
TspDTI	ATGAA	1 cut(s)	282
XapI	RAATTY	1 cut(s)	207
XspI	CTAG	2 cut(s)	140, 153

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.