Rmu_sc0009445.1_g000018

12-oxophytodienoate reductase

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0009445.1
Physical Location & Seq
Forward (+)
84230 .. 85288
1059 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0009445.1_g000018.1.cds

Sequence Viewer

Length: 1059 bp
atggtcaagtattattctcagaggtcgacccccggtggcttgttaatcagcgaaggcacttcgccctccgacacaagcgctgggtatccacgtgttcctgggatttacacggatgaacaggttgaggcatggaaaaaggttgtcgacgccgttcacgccaaaggttccatttttttctgtcaactttggcatgtaggtcgtgcttctcatcaagtttaccaacctggcggggcttcgccgatttcttcaaccaacaatcccatttcaaatggatggaaagttccgatgccagacggatctcaagagactgattacccacagcctcgacgcctcgaaacccacgaaatacctcagattgttgagcagtatcgccgcgctgccttaaatgcagttctagcaggttttgatggaattgagattcatgcggcacacggcttcctcattgatcaattcttgaaagatggaatcaacgatcgaactgatgagtatggtgggtcgcttgcaaaccgttgcaaattcttgattcaaattgttcaagcagtagttgaagcaattggtgctgacagagttgccgtcagaatctcaccagctattgattttcatgatgctacggactccgacccaattggcctaggccttgcagtgattggcaggctcaatgagcttcaatacaacgtaggttcaaagctcgcttatctccatgtgactcagcctcgtttcgctactcaaataaacgtaggcagggccgagtttgatcaagacagagaatctcaattcatgcggactttgcgagaagcttatcaaggtacattcatggctagtggagggtttacgagagaactaggaatggaaaccgtggcttccggtgatgctgatctagtgtcgtttggccgaaattttatctcaaaccccgacttggtgttgaggtttaagttgaatgctcctttgaacaagtatattagggagactttctacaccgatgatcctgtagttgggtacacagactacccttttctggaaagagaatgtgtgaaagaggatgagctctccccattttga

Protein Analysis

352

Amino Acids

39.09

Weight (kDa)

5.17

Isoelectric Point (pI)

33.11

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 389
AccI GTMKAC 2 cut(s) 26, 144
AccII CGCG 1 cut(s) 375
AciI CCGC 4 cut(s) 228, 373, 425, 781
AclWI GGATC 2 cut(s) 304, 977
AcoI YGGCCR 1 cut(s) 889
AcsI RAATTY 2 cut(s) 515, 895
AcvI CACGTG 1 cut(s) 92
AcyI GRCGYC 2 cut(s) 147, 328
AfaI GTAC 2 cut(s) 808, 998
AfeI AGCGCT 1 cut(s) 79
AfiI CCNNNNNNNGG 3 cut(s) 916, 992, 1015
AflIII ACRYGT 1 cut(s) 91
AjnI CCWGG 2 cut(s) 97, 223
AloI GAACNNNNNNTCC 2 cut(s) 264, 296
AluBI AGCT 5 cut(s) 590, 664, 688, 797, 1045
AluI AGCT 5 cut(s) 590, 664, 688, 797, 1045
Alw21I GWGCWC 1 cut(s) 1047
Alw26I GTCTC 2 cut(s) 299, 959
AlwI GGATC 2 cut(s) 304, 977
Aor51HI AGCGCT 1 cut(s) 79
AoxI GGCC 4 cut(s) 628, 634, 744, 889
ApeKI GCWGC 1 cut(s) 377
ApoI RAATTY 2 cut(s) 515, 895
AspA2I CCTAGG 1 cut(s) 631
AspLEI GCGC 2 cut(s) 80, 377
AspS9I GGNCC 1 cut(s) 744
AsuC2I CCSGG 1 cut(s) 33
AsuHPI GGTGA 2 cut(s) 576, 878
AvrII CCTAGG 1 cut(s) 631
BanII GRGCYC 1 cut(s) 1047
BbrPI CACGTG 1 cut(s) 92
Bbv12I GWGCWC 1 cut(s) 1047
BbvI GCAGC 1 cut(s) 364
BccI CCATC 3 cut(s) 267, 401, 455
BceAI ACGGC 3 cut(s) 134, 448, 557
BcgI CGANNNNNNTGC 2 cut(s) 179, 213
BciT130I CCWGG 2 cut(s) 99, 225
BciVI GTATCC 1 cut(s) 96
BclI TGATCA 2 cut(s) 445, 754
BcnI CCSGG 1 cut(s) 33
BcoDI GTCTC 2 cut(s) 299, 959
BfaI CTAG 5 cut(s) 395, 632, 819, 842, 878
BfmI CTRYAG 1 cut(s) 987
BfoI RGCGCY 1 cut(s) 81
BfuAI ACCTGC 1 cut(s) 389
BfuI GTATCC 1 cut(s) 96
BisI GCNGC 3 cut(s) 373, 378, 426
BlnI CCTAGG 1 cut(s) 631
BlsI GCNGC 3 cut(s) 374, 379, 427
Bme1390I CCNGG 3 cut(s) 33, 99, 225
BmgT120I GGNCC 1 cut(s) 744
BmiI GGNNCC 1 cut(s) 166
BmrFI CCNGG 3 cut(s) 33, 99, 225
BmsI GCATC 3 cut(s) 276, 595, 859
BpuEI CTTGAG 1 cut(s) 285
BpuMI CCSGG 1 cut(s) 33
BsaAI YACGTR 1 cut(s) 92
BsaBI GATNNNNATC 1 cut(s) 873
BsaHI GRCGYC 2 cut(s) 147, 328
BsaJI CCNNGG 4 cut(s) 31, 98, 631, 855
BsaWI WCCGGW 1 cut(s) 863
Bsc4I CCNNNNNNNGG 3 cut(s) 916, 992, 1015
Bse8I GATNNNNATC 1 cut(s) 873
BseBI CCWGG 2 cut(s) 99, 225
BseDI CCNNGG 4 cut(s) 31, 98, 631, 855
BseGI GGATG 3 cut(s) 118, 278, 1045
BseJI GATNNNNATC 1 cut(s) 873
BseLI CCNNNNNNNGG 3 cut(s) 916, 992, 1015
BseMII CTCAG 3 cut(s) 32, 365, 722
BseXI GCAGC 1 cut(s) 364
BseYI CCCAGC 1 cut(s) 80
Bsh1236I CGCG 1 cut(s) 375
Bsh1285I CGRYCG 1 cut(s) 475
BshFI GGCC 4 cut(s) 630, 636, 746, 891
BsiEI CGRYCG 1 cut(s) 475
BsiHKAI GWGCWC 1 cut(s) 1047
BsiSI CCGG 2 cut(s) 33, 864
BslI CCNNNNNNNGG 3 cut(s) 916, 992, 1015
BsmAI GTCTC 2 cut(s) 299, 959
BsmI GAATGC 1 cut(s) 943
BsnI GGCC 4 cut(s) 630, 636, 746, 891
Bsp1286I GDGCHC 1 cut(s) 1047
Bsp143I GATC 6 cut(s) 296, 445, 472, 754, 874, 982
BspACI CCGC 4 cut(s) 228, 373, 425, 781
BspANI GGCC 4 cut(s) 630, 636, 746, 891
BspCNI CTCAG 3 cut(s) 31, 364, 721
BspFNI CGCG 1 cut(s) 375
BspHI TCATGA 1 cut(s) 601
BspLI GGNNCC 1 cut(s) 166
BspMI ACCTGC 1 cut(s) 389
BspPI GGATC 2 cut(s) 304, 977
BssECI CCNNGG 4 cut(s) 31, 98, 631, 855
BssMI GATC 6 cut(s) 296, 445, 472, 754, 874, 982
BssNI GRCGYC 2 cut(s) 147, 328
BssT1I CCWWGG 1 cut(s) 631
Bst2UI CCWGG 2 cut(s) 99, 225
Bst4CI ACNGT 2 cut(s) 509, 856
BstACI GRCGYC 2 cut(s) 147, 328
BstAPI GCANNNNNTGC 1 cut(s) 557
BstBAI YACGTR 1 cut(s) 92
BstC8I GCNNGC 3 cut(s) 501, 653, 690
BstDEI CTNAG 3 cut(s) 18, 351, 708
BstDSI CCRYGG 1 cut(s) 855
BstF5I GGATG 3 cut(s) 118, 278, 1045
BstFNI CGCG 1 cut(s) 375
BstH2I RGCGCY 1 cut(s) 81
BstHHI GCGC 2 cut(s) 80, 377
BstKTI GATC 6 cut(s) 299, 448, 475, 757, 877, 985
BstMAI GTCTC 2 cut(s) 299, 959
BstMBI GATC 6 cut(s) 296, 445, 472, 754, 874, 982
BstMCI CGRYCG 1 cut(s) 475
BstMWI GCNNNNNNNGC 6 cut(s) 155, 386, 395, 557, 661, 787
BstNI CCWGG 2 cut(s) 99, 225
BstNSI RCATGY 1 cut(s) 194
BstSCI CCNGG 3 cut(s) 31, 97, 223
BstSFI CTRYAG 1 cut(s) 987
BstUI CGCG 1 cut(s) 375
BstV1I GCAGC 1 cut(s) 364
BstX2I RGATCY 1 cut(s) 296
BstYI RGATCY 1 cut(s) 296
BsuI GTATCC 1 cut(s) 96
BsuRI GGCC 4 cut(s) 630, 636, 746, 891
BtgI CCRYGG 1 cut(s) 855
BtsCI GGATG 3 cut(s) 118, 278, 1045
BtsI GCAGTG 1 cut(s) 648
BtsIMutI CAGTG 1 cut(s) 648
BveI ACCTGC 1 cut(s) 389
Cac8I GCNNGC 3 cut(s) 501, 653, 690
CciI TCATGA 1 cut(s) 601
CfoI GCGC 2 cut(s) 80, 377
Cfr13I GGNCC 1 cut(s) 744
CseI GACGC 2 cut(s) 155, 336
Csp6I GTAC 2 cut(s) 807, 997
CviAII CATG 7 cut(s) 129, 191, 422, 602, 701, 778, 814
CviQI GTAC 2 cut(s) 807, 997
DdeI CTNAG 3 cut(s) 18, 351, 708
DpnI GATC 6 cut(s) 298, 447, 474, 756, 876, 984
DpnII GATC 6 cut(s) 296, 445, 472, 754, 874, 982
EaeI YGGCCR 1 cut(s) 889
Ecl136II GAGCTC 1 cut(s) 1045
Eco130I CCWWGG 1 cut(s) 631
Eco147I AGGCCT 1 cut(s) 636
Eco24I GRGCYC 1 cut(s) 1047
Eco47III AGCGCT 1 cut(s) 79
Eco53kI GAGCTC 1 cut(s) 1045
Eco72I CACGTG 1 cut(s) 92
EcoICRI GAGCTC 1 cut(s) 1045
EcoRII CCWGG 2 cut(s) 97, 223
EcoT14I CCWWGG 1 cut(s) 631
EcoT38I GRGCYC 1 cut(s) 1047
ErhI CCWWGG 1 cut(s) 631
FaeI CATG 7 cut(s) 132, 194, 425, 605, 704, 781, 817
FaiI YATR 9 cut(s) 130, 192, 423, 489, 603, 702, 779, 815, 957
FatI CATG 7 cut(s) 128, 190, 421, 601, 700, 777, 813
FauI CCCGC 1 cut(s) 221
FbaI TGATCA 2 cut(s) 445, 754
FblI GTMKAC 2 cut(s) 26, 144
Fnu4HI GCNGC 3 cut(s) 373, 378, 426
FokI GGATG 3 cut(s) 125, 285, 1052
FriOI GRGCYC 1 cut(s) 1047
Fsp4HI GCNGC 3 cut(s) 373, 378, 426
FspBI CTAG 5 cut(s) 395, 632, 819, 842, 878
GlaI GCGC 2 cut(s) 79, 376
GluI GCNGC 3 cut(s) 373, 378, 426
GsaI CCCAGC 1 cut(s) 84
HaeII RGCGCY 1 cut(s) 81
HaeIII GGCC 4 cut(s) 630, 636, 746, 891
HapII CCGG 2 cut(s) 33, 864
HgaI GACGC 2 cut(s) 155, 336
HhaI GCGC 2 cut(s) 80, 377
Hin1I GRCGYC 2 cut(s) 147, 328
Hin1II CATG 7 cut(s) 132, 194, 425, 605, 704, 781, 817
Hin6I GCGC 2 cut(s) 78, 375
HinP1I GCGC 2 cut(s) 78, 375
HincII GTYRAC 3 cut(s) 27, 145, 182
HindII GTYRAC 3 cut(s) 27, 145, 182
HindIII AAGCTT 1 cut(s) 795
HinfI GANTC 7 cut(s) 418, 465, 523, 579, 614, 706, 767
HpaII CCGG 2 cut(s) 33, 864
HphI GGTGA 2 cut(s) 576, 878
Hpy166II GTNNAC 7 cut(s) 27, 145, 154, 182, 217, 831, 999
Hpy188I TCNGA 6 cut(s) 21, 70, 285, 354, 578, 619
Hpy188III TCNNGA 6 cut(s) 302, 454, 520, 602, 758, 1016
Hpy8I GTNNAC 7 cut(s) 27, 145, 154, 182, 217, 831, 999
Hpy99I CGWCG 2 cut(s) 149, 330
HpyAV CCTTC 1 cut(s) 47
HpyCH4III ACNGT 2 cut(s) 509, 856
HpyCH4IV ACGT 3 cut(s) 91, 675, 735
HpyCH4V TGCA 4 cut(s) 389, 503, 513, 641
HpyF10VI GCNNNNNNNGC 6 cut(s) 155, 386, 395, 557, 661, 787
HpyF3I CTNAG 3 cut(s) 18, 351, 708
HpySE526I ACGT 3 cut(s) 91, 675, 735
Hsp92I GRCGYC 2 cut(s) 147, 328
Hsp92II CATG 7 cut(s) 132, 194, 425, 605, 704, 781, 817
HspAI GCGC 2 cut(s) 78, 375
Ksp22I TGATCA 2 cut(s) 445, 754
Kzo9I GATC 6 cut(s) 296, 445, 472, 754, 874, 982
LmnI GCTCC 1 cut(s) 946
Lsp1109I GCAGC 1 cut(s) 364
LweI GCATC 3 cut(s) 276, 595, 859
MaeI CTAG 5 cut(s) 395, 632, 819, 842, 878
MaeII ACGT 3 cut(s) 91, 675, 735
MaeIII GTNAC 1 cut(s) 703
MalI GATC 6 cut(s) 298, 447, 474, 756, 876, 984
MboI GATC 6 cut(s) 296, 445, 472, 754, 874, 982
MboII GAAGA 1 cut(s) 237
MfeI CAATTG 2 cut(s) 552, 624
MflI RGATCY 1 cut(s) 296
MhlI GDGCHC 1 cut(s) 1047
MluCI AATT 8 cut(s) 411, 449, 515, 528, 552, 624, 773, 895
MlyI GAGTC 2 cut(s) 608, 700
MmeI TCCRAC 2 cut(s) 93, 642
MseI TTAA 3 cut(s) 44, 383, 930
MspI CCGG 2 cut(s) 33, 864
MspR9I CCNGG 3 cut(s) 33, 99, 225
MunI CAATTG 2 cut(s) 552, 624
Mva1269I GAATGC 1 cut(s) 943
MvaI CCWGG 2 cut(s) 99, 225
MvnI CGCG 1 cut(s) 375
MwoI GCNNNNNNNGC 6 cut(s) 155, 386, 395, 557, 661, 787
NciI CCSGG 1 cut(s) 33
NdeII GATC 6 cut(s) 296, 445, 472, 754, 874, 982
NlaIII CATG 7 cut(s) 132, 194, 425, 605, 704, 781, 817
NlaIV GGNNCC 1 cut(s) 166
NmeAIII GCCGAG 1 cut(s) 772
NmuCI GTSAC 1 cut(s) 703
NspI RCATGY 1 cut(s) 194
PagI TCATGA 1 cut(s) 601
PceI AGGCCT 1 cut(s) 636
PcsI WCGNNNNNNNCGW 1 cut(s) 339
PctI GAATGC 1 cut(s) 943
PfeI GAWTC 5 cut(s) 418, 465, 523, 579, 767
PkrI GCNGC 3 cut(s) 374, 379, 427
Ple19I CGATCG 1 cut(s) 475
PleI GAGTC 2 cut(s) 608, 700
PmaCI CACGTG 1 cut(s) 92
PmlI CACGTG 1 cut(s) 92
PpsI GAGTC 2 cut(s) 608, 700
Ppu21I YACGTR 1 cut(s) 92
Psp124BI GAGCTC 1 cut(s) 1047
Psp6I CCWGG 2 cut(s) 97, 223
PspCI CACGTG 1 cut(s) 92
PspFI CCCAGC 1 cut(s) 80
PspGI CCWGG 2 cut(s) 97, 223
PspN4I GGNNCC 1 cut(s) 166
PspPI GGNCC 1 cut(s) 744
PsuI RGATCY 1 cut(s) 296
PvuI CGATCG 1 cut(s) 475
RsaI GTAC 2 cut(s) 808, 998
RsaNI GTAC 2 cut(s) 807, 997
SacI GAGCTC 1 cut(s) 1047
SalI GTCGAC 2 cut(s) 25, 143
SaqAI TTAA 3 cut(s) 44, 383, 930
SatI GCNGC 3 cut(s) 373, 378, 426
Sau3AI GATC 6 cut(s) 296, 445, 472, 754, 874, 982
Sau96I GGNCC 1 cut(s) 744
SchI GAGTC 2 cut(s) 608, 700
ScrFI CCNGG 3 cut(s) 33, 99, 225
SduI GDGCHC 1 cut(s) 1047
SfaNI GCATC 3 cut(s) 276, 595, 859
SfcI CTRYAG 1 cut(s) 987
SmlI CTYRAG 1 cut(s) 300
SmoI CTYRAG 1 cut(s) 300
Sse9I AATT 8 cut(s) 411, 449, 515, 528, 552, 624, 773, 895
SseBI AGGCCT 1 cut(s) 636
SsiI CCGC 4 cut(s) 228, 373, 425, 781
SspMI CTAG 5 cut(s) 395, 632, 819, 842, 878
SstI GAGCTC 1 cut(s) 1047
StuI AGGCCT 1 cut(s) 636
StyD4I CCNGG 3 cut(s) 31, 97, 223
StyI CCWWGG 1 cut(s) 631
TaaI ACNGT 2 cut(s) 509, 856
TaiI ACGT 3 cut(s) 94, 678, 738
TaqI TCGA 5 cut(s) 26, 144, 325, 333, 475
TasI AATT 8 cut(s) 411, 449, 515, 528, 552, 624, 773, 895
TauI GCSGC 2 cut(s) 375, 428
TfiI GAWTC 5 cut(s) 418, 465, 523, 579, 767
Tru1I TTAA 3 cut(s) 44, 383, 930
Tru9I TTAA 3 cut(s) 44, 383, 930
TscAI CASTG 1 cut(s) 648
TseFI GTSAC 1 cut(s) 703
TseI GCWGC 1 cut(s) 377
Tsp45I GTSAC 1 cut(s) 703
TspDTI ATGAA 5 cut(s) 129, 410, 590, 766, 802
TspGWI ACGGA 3 cut(s) 125, 309, 626
TspRI CASTG 1 cut(s) 648
XapI RAATTY 2 cut(s) 515, 895
XceI RCATGY 1 cut(s) 194
XmaJI CCTAGG 1 cut(s) 631
XmiI GTMKAC 2 cut(s) 26, 144
XspI CTAG 5 cut(s) 395, 632, 819, 842, 878
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.