Rroxscaffold_2G00147040

12-oxophytodienoate reductase

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
Physical Location & Seq
Reverse (-)
84972704 .. 84974883
2180 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00147040.1

Sequence Viewer

Length: 1161 bp
ATGGCAGATTCTTCATCCACAGGACTCACTCTGTTCTCTCCTTACAAGATGGGCAAGTTCAACCTCTCTCACCGAGTGGTGCTTGCGCCAATGACGAGGTGTCGAGCATTGAACGAAGTTCCTCAGCCATCACTGGTCGAGTACTATTCTCAGAGGTCAACCCCCGGCGGCTTTCTTATCACAGAAGGCACTTCGCCCTCGGACGCAAGCGCTGGGTTTCCACATGTTCCTGGGATTTACACAGATGAACAGGTTGAGGCATGGAAGAAGGTGGTCAATGCTGTTCACGCCAAAGGTGCCATCATTTTCTGTCAACTTTGGCATGTCGGTCGTGCTTCTCATCAAGTTCTTCAACCTGGTGGGGGATCACCAATTTCTTCAACCAACAACCCCATCTCAAAGAGATGGAAAGTTCTCTTGCCAGATGGGTCTCATGACGCTTACCCTGAACCTCGACGCCTCGAGACCCATGAAATACCCCAGATCGTTGAGCAGTATCGCCACGCTGCCTTGAACGCTATTCGCGCAGGTTTTGATGGAATTGAGATCCATTCTGCACATGGCTACCTCATCGATCAATTCTTGAAAGATGGGATCAACGATCGAACTGATGAATATGGTGGGTCGCTTGAAAACCGCTGCAAGTTCTTGATCGAAACTGTTCAAGCAGTAGTTGAAGCCGTTGGTGCTGATAGAGTTGCTGTTAGAATCTCACCGGCTATTGATCACCTTGACGCTACTGACTCCGACCCAATTGGCCTAGGCTTGGCAGTGATTGAAAGGCTCAACAAGCTTCAACAAGACGTAGGCTCAAAGGTCGCTTATCTTCATGTGACTCAGCCCCGTTTCGCAGCTCATGGCCAAGTAGAGTTTGATCAAGACGAAGCTCGGTTTATGAGGACTCTGAGAAACGCTTATGAGGGTACATTCATGGCTAGTGGAGGGTTCACGAGAGAGCTAGGAATGGAAGCTGTGGCTTCAGGTGATACTGATTTGGTGTCGTATGGTCGCCAGTTTATCTCAAACCCTGACTTGGTTTTTAGATTTAAGCTAAATGCTCCTTTGAATCAGTATAATAGGGAGACTTTCTACACCCATGACCCTGTTGTTGGGTACACAGACTATCCTTTTCTAAACAGTGAAAGTGTGAAGGAGAATTAG

Protein Analysis

386

Amino Acids

42.73

Weight (kDa)

5.78

Isoelectric Point (pI)

38.15

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Oxidored_FMN PF00724 11 - 355 9.3e-90 NADH:flavin oxidoreductase / NADH oxidase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 518
AccB1I GGYRCC 1 cut(s) 296
AccII CGCG 1 cut(s) 525
AciI CCGC 2 cut(s) 168, 637
AclWI GGATC 3 cut(s) 373, 541, 602
AcoI YGGCCR 1 cut(s) 859
AcuI CTGAAG 1 cut(s) 963
AcyI GRCGYC 1 cut(s) 457
AdeI CACNNNGTG 1 cut(s) 76
AfaI GTAC 3 cut(s) 143, 925, 1115
AfeI AGCGCT 1 cut(s) 211
AfiI CCNNNNNNNGG 4 cut(s) 362, 766, 1033, 1109
AflIII ACRYGT 1 cut(s) 223
AhdI GACNNNNNGTC 1 cut(s) 99
AjnI CCWGG 2 cut(s) 229, 355
AluBI AGCT 6 cut(s) 793, 854, 887, 958, 971, 1051
AluI AGCT 6 cut(s) 793, 854, 887, 958, 971, 1051
Alw26I GTCTC 3 cut(s) 435, 458, 1076
AlwI GGATC 3 cut(s) 373, 541, 602
Ama87I CYCGRG 1 cut(s) 461
Aor51HI AGCGCT 1 cut(s) 211
AoxI GGCC 2 cut(s) 757, 859
ApeKI GCWGC 3 cut(s) 506, 639, 851
Asp700I GAANNNNTTC 1 cut(s) 660
AspA2I CCTAGG 1 cut(s) 760
AspLEI GCGC 3 cut(s) 88, 212, 527
AsuC2I CCSGG 1 cut(s) 165
AsuHPI GGTGA 5 cut(s) 62, 360, 705, 719, 995
AvaI CYCGRG 1 cut(s) 461
AvrII CCTAGG 1 cut(s) 760
BalI TGGCCA 1 cut(s) 861
BanI GGYRCC 1 cut(s) 296
BauI CACGAG 1 cut(s) 949
BbvCI CCTCAGC 1 cut(s) 123
BbvI GCAGC 3 cut(s) 493, 626, 863
BccI CCATC 8 cut(s) 43, 136, 308, 399, 401, 419, 530, 584
BceAI ACGGC 1 cut(s) 665
BcgI CGANNNNNNTGC 2 cut(s) 311, 345
BciT130I CCWGG 2 cut(s) 231, 357
BclI TGATCA 2 cut(s) 724, 874
BcnI CCSGG 1 cut(s) 165
BcoDI GTCTC 3 cut(s) 435, 458, 1076
BfaI CTAG 3 cut(s) 761, 936, 959
BfoI RGCGCY 1 cut(s) 213
BfuAI ACCTGC 1 cut(s) 518
BisI GCNGC 4 cut(s) 169, 507, 640, 852
BlnI CCTAGG 1 cut(s) 760
BlsI GCNGC 4 cut(s) 170, 508, 641, 853
BmcAI AGTACT 1 cut(s) 143
Bme1390I CCNGG 3 cut(s) 165, 231, 357
BmeRI GACNNNNNGTC 1 cut(s) 99
BmeT110I CYCGRG 1 cut(s) 461
BmiI GGNNCC 1 cut(s) 298
BmrFI CCNGG 3 cut(s) 165, 231, 357
Bpu10I CCTNAGC 1 cut(s) 123
BpuMI CCSGG 1 cut(s) 165
Bsa29I ATCGAT 1 cut(s) 573
BsaHI GRCGYC 1 cut(s) 457
BsaI GGTCTC 2 cut(s) 435, 458
BsaJI CCNNGG 4 cut(s) 163, 198, 230, 760
Bsc4I CCNNNNNNNGG 4 cut(s) 362, 766, 1033, 1109
Bse118I RCCGGY 1 cut(s) 715
Bse1I ACTGG 2 cut(s) 138, 1012
BseBI CCWGG 2 cut(s) 231, 357
BseCI ATCGAT 1 cut(s) 573
BseDI CCNNGG 4 cut(s) 163, 198, 230, 760
BseGI GGATG 1 cut(s) 14
BseLI CCNNNNNNNGG 4 cut(s) 362, 766, 1033, 1109
BseMII CTCAG 4 cut(s) 137, 164, 851, 896
BseNI ACTGG 2 cut(s) 138, 1012
BseXI GCAGC 3 cut(s) 493, 626, 863
BseYI CCCAGC 1 cut(s) 212
BsgI GTGCAG 1 cut(s) 540
Bsh1236I CGCG 1 cut(s) 525
Bsh1285I CGRYCG 2 cut(s) 331, 604
BshFI GGCC 2 cut(s) 759, 861
BshNI GGYRCC 1 cut(s) 296
BshVI ATCGAT 1 cut(s) 573
BsiEI CGRYCG 2 cut(s) 331, 604
BsiHKCI CYCGRG 1 cut(s) 461
BsiSI CCGG 2 cut(s) 165, 716
BslI CCNNNNNNNGG 4 cut(s) 362, 766, 1033, 1109
BsmAI GTCTC 3 cut(s) 435, 458, 1076
BsnI GGCC 2 cut(s) 759, 861
Bso31I GGTCTC 2 cut(s) 435, 458
BsoBI CYCGRG 1 cut(s) 461
Bsp143I GATC 9 cut(s) 365, 483, 546, 574, 594, 601, 651, 724, 874
BspACI CCGC 2 cut(s) 168, 637
BspANI GGCC 2 cut(s) 759, 861
BspCNI CTCAG 4 cut(s) 136, 163, 850, 897
BspDI ATCGAT 1 cut(s) 573
BspFNI CGCG 1 cut(s) 525
BspHI TCATGA 1 cut(s) 433
BspLI GGNNCC 1 cut(s) 298
BspMI ACCTGC 1 cut(s) 518
BspPI GGATC 3 cut(s) 373, 541, 602
BspT107I GGYRCC 1 cut(s) 296
BspTNI GGTCTC 2 cut(s) 435, 458
BsrFI RCCGGY 1 cut(s) 715
BsrI ACTGG 2 cut(s) 138, 1012
BssAI RCCGGY 1 cut(s) 715
BssECI CCNNGG 4 cut(s) 163, 198, 230, 760
BssMI GATC 9 cut(s) 365, 483, 546, 574, 594, 601, 651, 724, 874
BssNI GRCGYC 1 cut(s) 457
BssSI CACGAG 1 cut(s) 949
BssT1I CCWWGG 1 cut(s) 760
Bst2BI CACGAG 1 cut(s) 949
Bst2UI CCWGG 2 cut(s) 231, 357
Bst4CI ACNGT 2 cut(s) 661, 1139
BstACI GRCGYC 1 cut(s) 457
BstC8I GCNNGC 2 cut(s) 84, 208
BstDEI CTNAG 4 cut(s) 123, 150, 837, 905
BstF5I GGATG 1 cut(s) 14
BstFNI CGCG 1 cut(s) 525
BstH2I RGCGCY 1 cut(s) 213
BstHHI GCGC 3 cut(s) 88, 212, 527
BstKTI GATC 9 cut(s) 368, 486, 549, 577, 597, 604, 654, 727, 877
BstMAI GTCTC 3 cut(s) 435, 458, 1076
BstMBI GATC 9 cut(s) 365, 483, 546, 574, 594, 601, 651, 724, 874
BstMCI CGRYCG 2 cut(s) 331, 604
BstMWI GCNNNNNNNGC 6 cut(s) 287, 296, 515, 524, 686, 790
BstNI CCWGG 2 cut(s) 231, 357
BstNSI RCATGY 2 cut(s) 227, 326
BstSCI CCNGG 3 cut(s) 163, 229, 355
BstUI CGCG 1 cut(s) 525
BstV1I GCAGC 3 cut(s) 493, 626, 863
BstX2I RGATCY 1 cut(s) 546
BstYI RGATCY 1 cut(s) 546
Bsu15I ATCGAT 1 cut(s) 573
BsuRI GGCC 2 cut(s) 759, 861
BsuTUI ATCGAT 1 cut(s) 573
BtsCI GGATG 1 cut(s) 14
BtsI GCAGTG 1 cut(s) 777
BtsIMutI CAGTG 3 cut(s) 131, 777, 1144
BveI ACCTGC 1 cut(s) 518
Cac8I GCNNGC 2 cut(s) 84, 208
CciI TCATGA 1 cut(s) 433
CfoI GCGC 3 cut(s) 88, 212, 527
Cfr10I RCCGGY 1 cut(s) 715
ClaI ATCGAT 1 cut(s) 573
CseI GACGC 4 cut(s) 212, 446, 465, 743
CsiI ACCWGGT 1 cut(s) 355
Csp6I GTAC 3 cut(s) 142, 924, 1114
CviQI GTAC 3 cut(s) 142, 924, 1114
DdeI CTNAG 4 cut(s) 123, 150, 837, 905
DpnI GATC 9 cut(s) 367, 485, 548, 576, 596, 603, 653, 726, 876
DpnII GATC 9 cut(s) 365, 483, 546, 574, 594, 601, 651, 724, 874
DraIII CACNNNGTG 1 cut(s) 76
DriI GACNNNNNGTC 1 cut(s) 99
EaeI YGGCCR 1 cut(s) 859
Eam1105I GACNNNNNGTC 1 cut(s) 99
Eco130I CCWWGG 1 cut(s) 760
Eco31I GGTCTC 2 cut(s) 435, 458
Eco47III AGCGCT 1 cut(s) 211
Eco57I CTGAAG 1 cut(s) 963
Eco88I CYCGRG 1 cut(s) 461
EcoRII CCWGG 2 cut(s) 229, 355
EcoT14I CCWWGG 1 cut(s) 760
ErhI CCWWGG 1 cut(s) 760
FbaI TGATCA 2 cut(s) 724, 874
Fnu4HI GCNGC 4 cut(s) 169, 507, 640, 852
Fsp4HI GCNGC 4 cut(s) 169, 507, 640, 852
FspBI CTAG 3 cut(s) 761, 936, 959
GlaI GCGC 3 cut(s) 87, 211, 526
GluI GCNGC 4 cut(s) 169, 507, 640, 852
GsaI CCCAGC 1 cut(s) 216
HaeII RGCGCY 1 cut(s) 213
HaeIII GGCC 2 cut(s) 759, 861
HapII CCGG 2 cut(s) 165, 716
HgaI GACGC 4 cut(s) 212, 446, 465, 743
HhaI GCGC 3 cut(s) 88, 212, 527
Hin1I GRCGYC 1 cut(s) 457
Hin6I GCGC 3 cut(s) 86, 210, 525
HinP1I GCGC 3 cut(s) 86, 210, 525
HincII GTYRAC 2 cut(s) 159, 314
HindII GTYRAC 2 cut(s) 159, 314
HindIII AAGCTT 1 cut(s) 791
HinfI GANTC 7 cut(s) 8, 24, 708, 743, 835, 901, 1066
HpaII CCGG 2 cut(s) 165, 716
HphI GGTGA 5 cut(s) 62, 360, 705, 719, 995
Hpy166II GTNNAC 5 cut(s) 159, 286, 314, 948, 1116
Hpy188I TCNGA 4 cut(s) 153, 202, 748, 906
Hpy188III TCNNGA 6 cut(s) 434, 463, 583, 649, 878, 949
Hpy8I GTNNAC 5 cut(s) 159, 286, 314, 948, 1116
Hpy99I CGWCG 1 cut(s) 459
HpyAV CCTTC 3 cut(s) 179, 262, 1144
HpyCH4III ACNGT 2 cut(s) 661, 1139
HpyCH4IV ACGT 1 cut(s) 804
HpyCH4V TGCA 2 cut(s) 557, 642
HpyF10VI GCNNNNNNNGC 6 cut(s) 287, 296, 515, 524, 686, 790
HpyF3I CTNAG 4 cut(s) 123, 150, 837, 905
HpySE526I ACGT 1 cut(s) 804
Hsp92I GRCGYC 1 cut(s) 457
HspAI GCGC 3 cut(s) 86, 210, 525
Ksp22I TGATCA 2 cut(s) 724, 874
Kzo9I GATC 9 cut(s) 365, 483, 546, 574, 594, 601, 651, 724, 874
LmnI GCTCC 1 cut(s) 1063
Lsp1109I GCAGC 3 cut(s) 493, 626, 863
MabI ACCWGGT 1 cut(s) 355
MaeI CTAG 3 cut(s) 761, 936, 959
MaeII ACGT 1 cut(s) 804
MaeIII GTNAC 1 cut(s) 832
MalI GATC 9 cut(s) 367, 485, 548, 576, 596, 603, 653, 726, 876
MboI GATC 9 cut(s) 365, 483, 546, 574, 594, 601, 651, 724, 874
MboII GAAGA 5 cut(s) 3, 277, 341, 369, 818
MfeI CAATTG 1 cut(s) 753
MflI RGATCY 1 cut(s) 546
MlsI TGGCCA 1 cut(s) 861
MluCI AATT 5 cut(s) 372, 540, 578, 753, 1156
MluNI TGGCCA 1 cut(s) 861
MlyI GAGTC 4 cut(s) 18, 737, 829, 895
MmeI TCCRAC 1 cut(s) 771
Mox20I TGGCCA 1 cut(s) 861
MroXI GAANNNNTTC 1 cut(s) 660
MscI TGGCCA 1 cut(s) 861
MseI TTAA 1 cut(s) 1047
Msp20I TGGCCA 1 cut(s) 861
MspA1I CMGCKG 1 cut(s) 639
MspI CCGG 2 cut(s) 165, 716
MspR9I CCNGG 3 cut(s) 165, 231, 357
MunI CAATTG 1 cut(s) 753
MvaI CCWGG 2 cut(s) 231, 357
MvnI CGCG 1 cut(s) 525
MwoI GCNNNNNNNGC 6 cut(s) 287, 296, 515, 524, 686, 790
NciI CCSGG 1 cut(s) 165
NdeII GATC 9 cut(s) 365, 483, 546, 574, 594, 601, 651, 724, 874
NlaIV GGNNCC 1 cut(s) 298
NmuCI GTSAC 1 cut(s) 832
NspI RCATGY 2 cut(s) 227, 326
PaeR7I CTCGAG 1 cut(s) 461
PagI TCATGA 1 cut(s) 433
PciI ACATGT 1 cut(s) 223
PdmI GAANNNNTTC 1 cut(s) 660
PfeI GAWTC 3 cut(s) 8, 708, 1066
PkrI GCNGC 4 cut(s) 170, 508, 641, 853
Ple19I CGATCG 1 cut(s) 604
PleI GAGTC 4 cut(s) 18, 737, 829, 895
PpsI GAGTC 4 cut(s) 18, 737, 829, 895
PscI ACATGT 1 cut(s) 223
Psp6I CCWGG 2 cut(s) 229, 355
PspFI CCCAGC 1 cut(s) 212
PspGI CCWGG 2 cut(s) 229, 355
PspN4I GGNNCC 1 cut(s) 298
PsuI RGATCY 1 cut(s) 546
PvuI CGATCG 1 cut(s) 604
RsaI GTAC 3 cut(s) 143, 925, 1115
RsaNI GTAC 3 cut(s) 142, 924, 1114
SaqAI TTAA 1 cut(s) 1047
SatI GCNGC 4 cut(s) 169, 507, 640, 852
Sau3AI GATC 9 cut(s) 365, 483, 546, 574, 594, 601, 651, 724, 874
ScaI AGTACT 1 cut(s) 143
SchI GAGTC 4 cut(s) 18, 737, 829, 895
ScrFI CCNGG 3 cut(s) 165, 231, 357
SexAI ACCWGGT 1 cut(s) 355
Sfr274I CTCGAG 1 cut(s) 461
SlaI CTCGAG 1 cut(s) 461
SmlI CTYRAG 1 cut(s) 461
SmoI CTYRAG 1 cut(s) 461
Sse9I AATT 5 cut(s) 372, 540, 578, 753, 1156
SsiI CCGC 2 cut(s) 168, 637
SspMI CTAG 3 cut(s) 761, 936, 959
StyD4I CCNGG 3 cut(s) 163, 229, 355
StyI CCWWGG 1 cut(s) 760
TaaI ACNGT 2 cut(s) 661, 1139
TaiI ACGT 1 cut(s) 807
TaqI TCGA 7 cut(s) 103, 138, 454, 462, 573, 604, 654
TaqII GACCGA 1 cut(s) 317
TasI AATT 5 cut(s) 372, 540, 578, 753, 1156
TatI WGTACW 1 cut(s) 141
TauI GCSGC 1 cut(s) 171
TfiI GAWTC 3 cut(s) 8, 708, 1066
Tru1I TTAA 1 cut(s) 1047
Tru9I TTAA 1 cut(s) 1047
TscAI CASTG 3 cut(s) 138, 777, 1144
TseFI GTSAC 1 cut(s) 832
TseI GCWGC 3 cut(s) 506, 639, 851
Tsp45I GTSAC 1 cut(s) 832
TspDTI ATGAA 5 cut(s) 261, 486, 627, 818, 919
TspRI CASTG 3 cut(s) 138, 777, 1144
XceI RCATGY 2 cut(s) 227, 326
XcmI CCANNNNNNNNNTGG 1 cut(s) 557
XhoI CTCGAG 1 cut(s) 461
XmaJI CCTAGG 1 cut(s) 760
XmnI GAANNNNTTC 1 cut(s) 660
XspI CTAG 3 cut(s) 761, 936, 959
ZrmI AGTACT 1 cut(s) 143
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.